Cdh7 (cadherin 7, type 2) - Rat Genome Database

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Gene: Cdh7 (cadherin 7, type 2) Mus musculus
Analyze
Symbol: Cdh7
Name: cadherin 7, type 2
RGD ID: 1315713
MGI Page MGI
Description: Predicted to enable cadherin binding activity and calcium ion binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Is expressed in several structures, including central nervous system and retina. Orthologous to human CDH7 (cadherin 7).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 9330156F07Rik; cadherin-7; CDH7L; CDH7L1; MGC118246
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391109,909,967 - 110,073,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1109,910,161 - 110,067,887 (+)EnsemblGRCm39 Ensembl
GRCm381109,982,237 - 110,145,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1109,982,431 - 110,140,157 (+)EnsemblGRCm38mm10GRCm38
MGSCv371111,880,314 - 112,035,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,811,284 - 111,966,548 (+)NCBIMGSCv36mm8
Celera1112,730,070 - 112,891,174 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12948444   PMID:15273735   PMID:16141072   PMID:16141073   PMID:19809474   PMID:20711475   PMID:20847152  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22036570   PMID:22102170   PMID:24586749   PMID:24952961   PMID:25126785   PMID:27568519   PMID:30186101   PMID:33833667   PMID:34004180  
PMID:36074819   PMID:37624694  


Genomics

Comparative Map Data
Cdh7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391109,909,967 - 110,073,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1109,910,161 - 110,067,887 (+)EnsemblGRCm39 Ensembl
GRCm381109,982,237 - 110,145,272 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1109,982,431 - 110,140,157 (+)EnsemblGRCm38mm10GRCm38
MGSCv371111,880,314 - 112,035,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361111,811,284 - 111,966,548 (+)NCBIMGSCv36mm8
Celera1112,730,070 - 112,891,174 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map150.73NCBI
CDH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381865,750,252 - 65,890,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1865,750,252 - 65,890,337 (+)EnsemblGRCh38hg38GRCh38
GRCh371863,417,488 - 63,557,573 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361861,568,468 - 61,699,155 (+)NCBINCBI36Build 36hg18NCBI36
Build 341861,568,467 - 61,699,155NCBI
Celera1860,138,894 - 60,269,263 (+)NCBICelera
Cytogenetic Map18q22.1NCBI
HuRef1860,120,344 - 60,250,758 (+)NCBIHuRef
CHM1_11863,413,070 - 63,543,109 (+)NCBICHM1_1
T2T-CHM13v2.01865,956,460 - 66,096,655 (+)NCBIT2T-CHM13v2.0
Cdh7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81327,186,223 - 27,336,076 (+)NCBIGRCr8
mRatBN7.21326,672,058 - 26,821,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,672,484 - 26,819,846 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1327,026,414 - 27,166,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01328,310,876 - 28,451,099 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01326,983,235 - 27,119,003 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01331,081,064 - 31,228,884 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1331,081,804 - 31,231,213 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01336,218,960 - 36,368,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41316,884,417 - 17,020,846 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11316,871,885 - 17,009,083 (+)NCBI
Celera1326,435,771 - 26,572,149 (+)NCBICelera
Cytogenetic Map13q11NCBI
Cdh7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540249,444,814 - 49,562,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540249,444,814 - 49,568,653 (+)NCBIChiLan1.0ChiLan1.0
CDH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21783,258,753 - 83,401,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11868,951,362 - 69,094,046 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01859,104,931 - 59,244,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11862,413,667 - 62,546,295 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1862,413,715 - 62,543,844 (+)Ensemblpanpan1.1panPan2
CDH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1111,699,505 - 11,824,489 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl111,706,673 - 11,824,578 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,724,197 - 12,849,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0111,551,512 - 11,676,795 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl111,558,649 - 11,677,951 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1111,581,912 - 11,707,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0111,525,142 - 11,649,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0111,768,853 - 11,894,341 (-)NCBIUU_Cfam_GSD_1.0
Cdh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494424,927,755 - 25,054,446 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936497168,265 - 293,236 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1156,295,434 - 156,435,822 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11156,295,885 - 156,436,375 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21173,581,771 - 173,665,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11813,867,659 - 14,009,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1813,870,360 - 13,989,936 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606011,781,146 - 11,883,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479211,849,046 - 11,958,461 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479211,836,034 - 11,963,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdh7
6798 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3190
Count of miRNA genes:822
Interacting mature miRNAs:1146
Transcripts:ENSMUST00000027542, ENSMUST00000112701, ENSMUST00000129923, ENSMUST00000131464, ENSMUST00000134301, ENSMUST00000137092, ENSMUST00000145188, ENSMUST00000146282, ENSMUST00000172005
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
12879492Ecgnq1_meccrine gland number QTL 1 (mouse)1103278062120535225Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse

Markers in Region
UniSTS:224730  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381110,138,456 - 110,138,529UniSTSGRCm38
MGSCv371112,035,033 - 112,035,106UniSTSGRCm37
Celera1112,890,629 - 112,890,702UniSTS
Cytogenetic Map1E2.1UniSTS
BB129525  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381110,139,036 - 110,139,174UniSTSGRCm38
MGSCv371112,035,613 - 112,035,751UniSTSGRCm37
Celera1112,891,209 - 112,891,347UniSTS
Cytogenetic Map1E2.1UniSTS
Whitehead/MRC_RH11476.74UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001316743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001316744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC101794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY267034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ130526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000027542   ⟹   ENSMUSP00000027542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,921,712 - 110,066,919 (+)Ensembl
GRCm38.p6 Ensembl1109,993,982 - 110,139,189 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112701   ⟹   ENSMUSP00000108321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,910,440 - 110,067,887 (+)Ensembl
GRCm38.p6 Ensembl1109,982,710 - 110,140,157 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129923   ⟹   ENSMUSP00000140966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,910,711 - 109,923,053 (+)Ensembl
GRCm38.p6 Ensembl1109,982,981 - 109,995,323 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131464   ⟹   ENSMUSP00000138046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,910,959 - 110,066,925 (+)Ensembl
GRCm38.p6 Ensembl1109,983,229 - 110,139,195 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134301   ⟹   ENSMUSP00000123394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1110,027,025 - 110,065,788 (+)Ensembl
GRCm38.p6 Ensembl1110,099,295 - 110,138,058 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137092   ⟹   ENSMUSP00000139465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,910,161 - 109,923,685 (+)Ensembl
GRCm38.p6 Ensembl1109,982,431 - 109,995,955 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145188   ⟹   ENSMUSP00000120231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,910,736 - 109,922,112 (+)Ensembl
GRCm38.p6 Ensembl1109,983,006 - 109,994,382 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146282   ⟹   ENSMUSP00000140650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,911,011 - 109,926,399 (+)Ensembl
GRCm38.p6 Ensembl1109,983,281 - 109,998,669 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172005   ⟹   ENSMUSP00000129715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1109,911,467 - 110,066,731 (+)Ensembl
GRCm38.p6 Ensembl1109,983,737 - 110,139,001 (+)Ensembl
RefSeq Acc Id: NM_001316743   ⟹   NP_001303672
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,630 - 110,067,633 (+)NCBI
GRCm381109,982,900 - 110,139,903 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001316744   ⟹   NP_001303673
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,911,032 - 110,067,633 (+)NCBI
GRCm381109,983,302 - 110,139,903 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172853   ⟹   NP_766441
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,911,453 - 110,067,633 (+)NCBI
GRCm381109,983,723 - 110,139,903 (+)NCBI
MGSCv371111,880,314 - 112,035,578 (+)RGD
Celera1112,730,070 - 112,891,174 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529600   ⟹   XP_006529663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529601   ⟹   XP_006529664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529608   ⟹   XP_006529671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,057 - 110,073,002 (+)NCBI
GRCm381109,982,327 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529609   ⟹   XP_006529672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529610   ⟹   XP_006529673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,435 - 110,073,002 (+)NCBI
GRCm381109,982,705 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529611   ⟹   XP_006529674
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,435 - 110,073,002 (+)NCBI
GRCm381109,982,705 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248006   ⟹   XP_011246308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248008   ⟹   XP_011246310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391110,003,204 - 110,073,002 (+)NCBI
GRCm381110,079,775 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320693   ⟹   XP_017176182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,909,967 - 110,073,002 (+)NCBI
GRCm381109,982,237 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320698   ⟹   XP_017176187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320699   ⟹   XP_017176188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320701   ⟹   XP_017176190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
GRCm381109,982,372 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320703   ⟹   XP_017176192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,435 - 110,073,002 (+)NCBI
GRCm381109,982,705 - 110,145,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320706   ⟹   XP_017176195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,040,529 (+)NCBI
GRCm381109,982,372 - 110,111,694 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165091   ⟹   XP_036020984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165096   ⟹   XP_036020989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391109,910,102 - 110,073,002 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001303672 (Get FASTA)   NCBI Sequence Viewer  
  NP_001303673 (Get FASTA)   NCBI Sequence Viewer  
  NP_766441 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529663 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529664 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529671 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529672 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529673 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529674 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246308 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246310 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176182 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176187 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176188 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176190 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176192 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176195 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020984 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020989 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI03787 (Get FASTA)   NCBI Sequence Viewer  
  AAI41120 (Get FASTA)   NCBI Sequence Viewer  
  AAP94032 (Get FASTA)   NCBI Sequence Viewer  
  BAC28586 (Get FASTA)   NCBI Sequence Viewer  
  BAC31286 (Get FASTA)   NCBI Sequence Viewer  
  BAC31323 (Get FASTA)   NCBI Sequence Viewer  
  BAE23328 (Get FASTA)   NCBI Sequence Viewer  
  EDL39839 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000027542
  ENSMUSP00000027542.7
  ENSMUSP00000108321
  ENSMUSP00000108321.2
  ENSMUSP00000120231.2
  ENSMUSP00000123394.2
  ENSMUSP00000129715
  ENSMUSP00000129715.2
  ENSMUSP00000138046.2
  ENSMUSP00000139465.2
  ENSMUSP00000140650.2
  ENSMUSP00000140966.2
GenBank Protein Q8BM92 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_766441   ⟸   NM_172853
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529663   ⟸   XM_006529600
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529664   ⟸   XM_006529601
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529671   ⟸   XM_006529608
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529672   ⟸   XM_006529609
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529673   ⟸   XM_006529610
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529674   ⟸   XM_006529611
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246308   ⟸   XM_011248006
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246310   ⟸   XM_011248008
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017176182   ⟸   XM_017320693
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176187   ⟸   XM_017320698
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176188   ⟸   XM_017320699
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176190   ⟸   XM_017320701
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176195   ⟸   XM_017320706
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017176192   ⟸   XM_017320703
- Peptide Label: isoform X1
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001303672   ⟸   NM_001316743
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   Q8BM92 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001303673   ⟸   NM_001316744
- Peptide Label: isoform 2
- UniProtKB: B2RUF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027542   ⟸   ENSMUST00000027542
RefSeq Acc Id: ENSMUSP00000120231   ⟸   ENSMUST00000145188
RefSeq Acc Id: ENSMUSP00000129715   ⟸   ENSMUST00000172005
RefSeq Acc Id: ENSMUSP00000108321   ⟸   ENSMUST00000112701
RefSeq Acc Id: ENSMUSP00000140650   ⟸   ENSMUST00000146282
RefSeq Acc Id: ENSMUSP00000138046   ⟸   ENSMUST00000131464
RefSeq Acc Id: ENSMUSP00000140966   ⟸   ENSMUST00000129923
RefSeq Acc Id: ENSMUSP00000123394   ⟸   ENSMUST00000134301
RefSeq Acc Id: ENSMUSP00000139465   ⟸   ENSMUST00000137092
RefSeq Acc Id: XP_036020989   ⟸   XM_036165096
- Peptide Label: isoform X2
- UniProtKB: B2RUF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020984   ⟸   XM_036165091
- Peptide Label: isoform X1
- UniProtKB: Q8BM92 (UniProtKB/Swiss-Prot),   Q3UVE2 (UniProtKB/Swiss-Prot),   Q67G09 (UniProtKB/Swiss-Prot),   B2RUF4 (UniProtKB/TrEMBL)
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BM92-F1-model_v2 AlphaFold Q8BM92 1-785 view protein structure

Promoters
RGD ID:6874682
Promoter ID:EPDNEW_M792
Type:single initiation site
Name:Cdh7_2
Description:Mus musculus cadherin 7, type 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M793  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381109,982,270 - 109,982,330EPDNEW
RGD ID:6874684
Promoter ID:EPDNEW_M793
Type:multiple initiation site
Name:Cdh7_1
Description:Mus musculus cadherin 7, type 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M792  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381109,983,298 - 109,983,358EPDNEW
RGD ID:6817496
Promoter ID:MM_KWN:1848
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000068674,   ENSMUST00000086681,   ENSMUST00000112701,   OTTMUST00000053581,   OTTMUST00000053583,   OTTMUST00000053584,   OTTMUST00000053585,   UC007CHV.1,   UC007CHW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361111,879,701 - 111,880,201 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442792 AgrOrtholog
Ensembl Genes ENSMUSG00000026312 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027542 ENTREZGENE
  ENSMUST00000027542.13 UniProtKB/Swiss-Prot
  ENSMUST00000112701 ENTREZGENE
  ENSMUST00000112701.8 UniProtKB/Swiss-Prot
  ENSMUST00000129923.2 UniProtKB/TrEMBL
  ENSMUST00000131464.8 UniProtKB/TrEMBL
  ENSMUST00000134301.2 UniProtKB/TrEMBL
  ENSMUST00000137092.8 UniProtKB/TrEMBL
  ENSMUST00000145188.2 UniProtKB/TrEMBL
  ENSMUST00000146282.3 UniProtKB/TrEMBL
  ENSMUST00000172005 ENTREZGENE
  ENSMUST00000172005.8 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.900.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:241201 UniProtKB/Swiss-Prot
MGD MGI:2442792 ENTREZGENE
NCBI Gene 241201 ENTREZGENE
PANTHER CADHERIN-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdh7 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RUF4 ENTREZGENE, UniProtKB/TrEMBL
  CADH7_MOUSE UniProtKB/Swiss-Prot
  D3Z0J7_MOUSE UniProtKB/TrEMBL
  F6WWT2_MOUSE UniProtKB/TrEMBL
  M0QWW8_MOUSE UniProtKB/TrEMBL
  Q3UVE2 ENTREZGENE
  Q67G09 ENTREZGENE
  Q8BLT4_MOUSE UniProtKB/TrEMBL
  Q8BLT5_MOUSE UniProtKB/TrEMBL
  Q8BM92 ENTREZGENE
UniProt Secondary Q3UVE2 UniProtKB/Swiss-Prot
  Q67G09 UniProtKB/Swiss-Prot