Il18rap (interleukin 18 receptor accessory protein) - Rat Genome Database

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Gene: Il18rap (interleukin 18 receptor accessory protein) Mus musculus
Analyze
Symbol: Il18rap
Name: interleukin 18 receptor accessory protein
RGD ID: 1315692
MGI Page MGI
Description: Predicted to enable coreceptor activity and interleukin-18 receptor activity. Acts upstream of or within several processes, including interleukin-18-mediated signaling pathway; neutrophil activation; and positive regulation of natural killer cell mediated cytotoxicity. Predicted to be located in plasma membrane. Predicted to be part of interleukin-18 receptor complex. Is expressed in aorta-gonad-mesonephros. Orthologous to human IL18RAP (interleukin 18 receptor accessory protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: accessory protein-like; AcPL; AcPL accessory protein-like; AcPL accessory protein-like); CD218 antigen-like family member B; IL-18 receptor accessory protein; IL-18R-beta; IL-18RAcP; IL-18Rbeta; IL-1R accessory protein-like; IL-1RAcPL; interleukin-18 receptor accessory protein; interleukin-18 receptor accessory protein-like; interleukin-18 receptor beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39140,554,548 - 40,590,867 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl140,554,522 - 40,590,865 (+)EnsemblGRCm39 Ensembl
GRCm38140,515,362 - 40,551,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl140,515,362 - 40,551,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv37140,572,207 - 40,606,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36140,459,909 - 40,493,851 (+)NCBIMGSCv36mm8
Celera140,327,551 - 40,361,507 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map119.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Association of IL1RL1, IL18R1, and IL18RAP gene cluster polymorphisms with asthma and atopy. Reijmerink NE, etal., J Allergy Clin Immunol. 2008 Sep;122(3):651-4.e8.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Neutralization of interleukin-18 ameliorates ischemia/reperfusion-induced myocardial injury. Venkatachalam K, etal., J Biol Chem. 2009 Mar 20;284(12):7853-65. Epub 2009 Jan 21.
Additional References at PubMed
PMID:9792649   PMID:10349636   PMID:11042159   PMID:11046021   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15843532   PMID:16141072   PMID:16141073   PMID:18805969   PMID:21111041  
PMID:21677750   PMID:21873635   PMID:27034373   PMID:33510029  


Genomics

Comparative Map Data
Il18rap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39140,554,548 - 40,590,867 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl140,554,522 - 40,590,865 (+)EnsemblGRCm39 Ensembl
GRCm38140,515,362 - 40,551,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl140,515,362 - 40,551,705 (+)EnsemblGRCm38mm10GRCm38
MGSCv37140,572,207 - 40,606,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36140,459,909 - 40,493,851 (+)NCBIMGSCv36mm8
Celera140,327,551 - 40,361,507 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map119.37NCBI
IL18RAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382102,418,621 - 102,452,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2102,418,689 - 102,452,565 (+)EnsemblGRCh38hg38GRCh38
GRCh372103,035,081 - 103,069,025 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362102,401,686 - 102,435,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 342102,493,771 - 102,527,543NCBI
Celera297,236,395 - 97,270,167 (+)NCBICelera
Cytogenetic Map2q12.1NCBI
HuRef296,799,620 - 96,833,394 (+)NCBIHuRef
CHM1_12103,039,555 - 103,073,326 (+)NCBICHM1_1
T2T-CHM13v2.02102,877,486 - 102,911,541 (+)NCBIT2T-CHM13v2.0
Il18rap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8950,263,723 - 50,296,583 (+)NCBIGRCr8
mRatBN7.2942,768,112 - 42,800,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl942,768,220 - 42,800,959 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0947,225,543 - 47,255,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl947,225,585 - 47,258,503 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0946,909,764 - 46,940,139 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4939,676,026 - 39,677,475 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1939,677,439 - 39,678,889 (+)NCBI
Celera940,511,761 - 40,545,650 (+)NCBICelera
Cytogenetic Map9q22NCBI
Il18rap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554707,893,329 - 7,923,744 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554707,894,900 - 7,923,653 (+)NCBIChiLan1.0ChiLan1.0
IL18RAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21225,250,507 - 25,280,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A25,253,272 - 25,283,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A99,363,823 - 99,393,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A103,510,109 - 103,543,950 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A103,510,109 - 103,544,916 (+)Ensemblpanpan1.1panPan2
IL18RAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11040,578,503 - 40,605,800 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1040,581,096 - 40,605,766 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1040,504,647 - 40,531,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01041,444,971 - 41,472,267 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1041,447,562 - 41,472,778 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11041,159,477 - 41,186,767 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01041,440,138 - 41,467,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01041,632,829 - 41,660,098 (-)NCBIUU_Cfam_GSD_1.0
Il18rap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629290,017,009 - 90,045,035 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367131,087,884 - 1,115,512 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL18RAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl351,762,486 - 51,794,471 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1351,762,111 - 51,794,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2354,241,979 - 54,274,049 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL18RAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1146,081,539 - 6,114,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl146,085,262 - 6,114,028 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041173,763,307 - 173,797,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il18rap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247496,930,025 - 6,957,241 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Il18rap
1321 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1118
Count of miRNA genes:667
Interacting mature miRNAs:821
Transcripts:ENSMUST00000027237, ENSMUST00000159724, ENSMUST00000160468, ENSMUST00000163057
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse

Markers in Region
AF077347  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38140,549,083 - 40,549,210UniSTSGRCm38
MGSCv37140,605,928 - 40,606,055UniSTSGRCm37
Celera140,361,287 - 40,361,414UniSTS
Cytogenetic Map1BUniSTS
Whitehead/MRC_RH1634.22UniSTS
Il18rap  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38140,548,738 - 40,549,167UniSTSGRCm38
MGSCv37140,605,583 - 40,606,012UniSTSGRCm37
Celera140,360,942 - 40,361,371UniSTS
Cytogenetic Map1BUniSTS
cM Map1 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027237   ⟹   ENSMUSP00000027237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl140,554,522 - 40,590,865 (+)Ensembl
GRCm38.p6 Ensembl140,515,362 - 40,551,705 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl140,554,608 - 40,566,077 (+)Ensembl
GRCm38.p6 Ensembl140,515,448 - 40,526,917 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl140,580,852 - 40,587,063 (+)Ensembl
GRCm38.p6 Ensembl140,541,692 - 40,547,903 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl140,554,565 - 40,578,645 (+)Ensembl
GRCm38.p6 Ensembl140,515,405 - 40,539,485 (+)Ensembl
RefSeq Acc Id: NM_010553   ⟹   NP_034683
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39140,554,557 - 40,590,867 (+)NCBI
GRCm38140,515,362 - 40,551,705 (+)NCBI
MGSCv37140,572,207 - 40,606,148 (+)RGD
Celera140,327,551 - 40,363,909 (+)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495710   ⟹   XP_006495773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39140,554,548 - 40,590,867 (+)NCBI
GRCm38140,515,388 - 40,551,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495712   ⟹   XP_006495775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39140,564,511 - 40,590,867 (+)NCBI
GRCm38140,525,343 - 40,551,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250547   ⟹   XP_030106407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39140,554,548 - 40,590,867 (+)NCBI
GRCm38140,515,388 - 40,551,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162130   ⟹   XP_036018023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39140,554,548 - 40,581,133 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034683   ⟸   NM_010553
- Peptide Label: precursor
- UniProtKB: Q9Z2B1 (UniProtKB/Swiss-Prot),   Q0VBK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495773   ⟸   XM_006495710
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006495775   ⟸   XM_006495712
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030106407   ⟸   XM_030250547
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000027237   ⟸   ENSMUST00000027237
RefSeq Acc Id: XP_036018023   ⟸   XM_036162130
- Peptide Label: isoform X2
- UniProtKB: Q3UV73 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   Ig-like C2-type   IL-1Ra-like immunoglobulin   TIR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2B1-F1-model_v2 AlphaFold Q9Z2B1 1-614 view protein structure

Promoters
RGD ID:6873570
Promoter ID:EPDNEW_M236
Type:initiation region
Name:Il18rap_1
Description:Mus musculus interleukin 18 receptor accessory protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38140,515,407 - 40,515,467EPDNEW
RGD ID:6817934
Promoter ID:MM_KWN:564
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:ENSMUST00000027237,   UC007AUI.1,   UC007AUJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36140,571,941 - 40,572,441 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1338888 AgrOrtholog
Ensembl Genes ENSMUSG00000026068 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027237 ENTREZGENE
  ENSMUST00000027237.12 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL-1_rcpt_I/II-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16174 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1338888 ENTREZGENE
NCBI Gene 16174 ENTREZGENE
PANTHER INTERLEUKIN-18 RECEPTOR ACCESSORY PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11890 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Il18rap PhenoGen
PRINTS INTRLKN1R12F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTRLKN1R1F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt I18RA_MOUSE UniProtKB/Swiss-Prot
  Q0VBK3 ENTREZGENE, UniProtKB/TrEMBL
  Q3TTU1_MOUSE UniProtKB/TrEMBL
  Q3UV73 ENTREZGENE, UniProtKB/TrEMBL
  Q8C6U0_MOUSE UniProtKB/TrEMBL
  Q9Z2B1 ENTREZGENE