Pde6a (phosphodiesterase 6A, cGMP-specific, rod, alpha) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Pde6a (phosphodiesterase 6A, cGMP-specific, rod, alpha) Mus musculus
Analyze
Symbol: Pde6a
Name: phosphodiesterase 6A, cGMP-specific, rod, alpha
RGD ID: 1315677
MGI Page MGI
Description: Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity and 3',5'-cyclic-GMP phosphodiesterase activity. Acts upstream of or within photoreceptor cell maintenance and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be active in photoreceptor outer segment membrane. Is expressed in eye; retina; and retina outer nuclear layer. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa 43. Orthologous to human PDE6A (phosphodiesterase 6A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cGMP phosphodiesterase alpha; GMP-PDE alpha; MGC25111; nmf282; Pd; Pdea; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,353,546 - 61,426,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,353,387 - 61,422,995 (+)EnsemblGRCm39 Ensembl
GRCm381861,220,474 - 61,289,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,220,315 - 61,289,924 (+)EnsemblGRCm38mm10GRCm38
MGSCv371861,380,153 - 61,449,404 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,345,868 - 61,415,119 (+)NCBIMGSCv36mm8
Celera1862,507,018 - 62,573,593 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Characteristics of photoreceptor PDE (PDE6): similarities and differences to PDE5. Cote RH Int J Impot Res. 2004 Jun;16 Suppl 1:S28-33.
2. Genes and mutations causing retinitis pigmentosa. Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait. Wright AF, etal., Nat Rev Genet. 2010 Apr;11(4):273-84. doi: 10.1038/nrg2717.
Additional References at PubMed
PMID:1319776   PMID:1354640   PMID:1847109   PMID:1981056   PMID:2153291   PMID:2165490   PMID:2167232   PMID:2467600   PMID:2822478   PMID:3015681   PMID:8094988   PMID:10349636  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11401494   PMID:11468275   PMID:12477932   PMID:15001570   PMID:15163632   PMID:16110338   PMID:16141072   PMID:16141073   PMID:17307970  
PMID:18849587   PMID:19758987   PMID:19798052   PMID:19805139   PMID:21052544   PMID:21410772   PMID:21799013   PMID:21873635   PMID:22183357   PMID:23108158   PMID:23864662   PMID:24101599  
PMID:25776555   PMID:26188004   PMID:27008858   PMID:27328943   PMID:27551530   PMID:30001913   PMID:31493975   PMID:32028070   PMID:32290105   PMID:33500475   PMID:34292885   PMID:35065964  
PMID:36293380  


Genomics

Comparative Map Data
Pde6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,353,546 - 61,426,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,353,387 - 61,422,995 (+)EnsemblGRCm39 Ensembl
GRCm381861,220,474 - 61,289,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,220,315 - 61,289,924 (+)EnsemblGRCm38mm10GRCm38
MGSCv371861,380,153 - 61,449,404 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,345,868 - 61,415,119 (+)NCBIMGSCv36mm8
Celera1862,507,018 - 62,573,593 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
PDE6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385149,857,953 - 149,944,793 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5149,857,953 - 149,944,793 (-)EnsemblGRCh38hg38GRCh38
GRCh375149,237,516 - 149,324,356 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,220,410 - 149,304,549 (-)NCBINCBI36Build 36hg18NCBI36
Build 345149,220,419 - 149,304,549NCBI
Celera5145,318,881 - 145,405,751 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,384,347 - 144,472,303 (-)NCBIHuRef
CHM1_15148,670,177 - 148,757,019 (-)NCBICHM1_1
T2T-CHM13v2.05150,394,428 - 150,481,347 (-)NCBIT2T-CHM13v2.0
Pde6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,947,249 - 57,019,015 (+)NCBIGRCr8
mRatBN7.21854,676,863 - 54,748,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,676,863 - 54,748,816 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,765,069 - 56,842,167 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,479,673 - 57,556,770 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01855,300,743 - 55,372,519 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,544,652 - 56,617,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,544,652 - 56,617,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,775,712 - 55,848,855 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,194,726 - 57,268,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11857,267,060 - 57,339,325 (+)NCBI
Celera1852,829,228 - 52,901,931 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Pde6a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,566,271 - 4,637,070 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,556,636 - 4,637,070 (+)NCBIChiLan1.0ChiLan1.0
PDE6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,086,567 - 145,173,739 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,226,116 - 143,313,288 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,283,505 - 145,369,596 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,289,225 - 151,375,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,294,041 - 151,375,832 (-)Ensemblpanpan1.1panPan2
PDE6A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,103,965 - 59,163,857 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,103,945 - 59,163,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,869,721 - 58,929,621 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,584,148 - 59,644,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,584,982 - 59,644,927 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,373,301 - 59,433,215 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,487,640 - 59,547,674 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0460,018,959 - 60,078,866 (+)NCBIUU_Cfam_GSD_1.0
Pde6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,444,055 - 143,514,360 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365045,018,064 - 5,092,024 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365045,018,171 - 5,088,333 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDE6A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2150,927,770 - 150,985,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12150,926,652 - 150,986,050 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,742,261 - 157,800,838 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDE6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,465,497 - 52,550,671 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,468,022 - 52,549,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603425,167,432 - 25,252,764 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pde6a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,182,865 - 9,248,537 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,179,272 - 9,291,484 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pde6a
2234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1204
Count of miRNA genes:401
Interacting mature miRNAs:456
Transcripts:ENSMUST00000025468, ENSMUST00000135688
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse

Markers in Region
X60664  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381861,288,434 - 61,288,553UniSTSGRCm38
MGSCv371861,448,088 - 61,448,207UniSTSGRCm37
Celera1862,572,287 - 62,572,406UniSTS
Cytogenetic Map18E1UniSTS
cM Map1831.0UniSTS
Whitehead/MRC_RH18796.59UniSTS
UniSTS:224610  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381861,288,303 - 61,288,573UniSTSGRCm38
MGSCv371861,447,957 - 61,448,227UniSTSGRCm37
Celera1862,572,156 - 62,572,426UniSTS
Cytogenetic Map18E1UniSTS
cM Map1831.0UniSTS
Pde6a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18E1UniSTS
cM Map1834.41UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000025468   ⟹   ENSMUSP00000025468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1861,353,387 - 61,422,995 (+)Ensembl
GRCm38.p6 Ensembl1861,220,315 - 61,289,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135688   ⟹   ENSMUSP00000115963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1861,408,094 - 61,422,995 (+)Ensembl
GRCm38.p6 Ensembl1861,275,023 - 61,289,924 (+)Ensembl
RefSeq Acc Id: NM_146086   ⟹   NP_666198
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,353,546 - 61,422,821 (+)NCBI
GRCm381861,220,474 - 61,289,750 (+)NCBI
MGSCv371861,380,153 - 61,449,404 (+)RGD
Celera1862,507,018 - 62,573,593 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525880   ⟹   XP_006525943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391861,371,359 - 61,426,698 (+)NCBI
GRCm381861,238,287 - 61,288,457 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666198   ⟸   NM_146086
- UniProtKB: P27664 (UniProtKB/Swiss-Prot),   E9Q673 (UniProtKB/Swiss-Prot),   Q8K0A8 (UniProtKB/TrEMBL),   B2RY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525943   ⟸   XM_006525880
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000115963   ⟸   ENSMUST00000135688
RefSeq Acc Id: ENSMUSP00000025468   ⟸   ENSMUST00000025468
Protein Domains
GAF   PDEase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27664-F1-model_v2 AlphaFold P27664 1-859 view protein structure

Promoters
RGD ID:13677944
Promoter ID:EPDNEW_M23120
Type:multiple initiation site
Name:Pde6a_1
Description:Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381861,220,474 - 61,220,534EPDNEW
RGD ID:6829455
Promoter ID:MM_KWN:25421
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000069637
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361861,379,551 - 61,380,051 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97524 AgrOrtholog
Ensembl Genes ENSMUSG00000024575 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025468 ENTREZGENE
  ENSMUST00000025468.15 UniProtKB/TrEMBL
  ENSMUST00000135688.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1300.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.450.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAF-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HD/PDEase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEase_catalytic_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEase_catalytic_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:225600 UniProtKB/TrEMBL
MGD MGI:97524 ENTREZGENE
NCBI Gene 225600 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE PHOSPHODIESTERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11347:SF115 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEase_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pde6a PhenoGen
PRINTS PDIESTERASE1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PDEASE_I_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDEASE_I_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP GAF domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HD-domain/PDEase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RY78 ENTREZGENE, UniProtKB/TrEMBL
  E9Q673 ENTREZGENE
  F6UDG9_MOUSE UniProtKB/TrEMBL
  P27664 ENTREZGENE, UniProtKB/Swiss-Prot
  Q8C9G0_MOUSE UniProtKB/TrEMBL
  Q8K0A8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9Q673 UniProtKB/Swiss-Prot