Lrig1 (leucine-rich repeats and immunoglobulin-like domains 1) - Rat Genome Database
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Gene: Lrig1 (leucine-rich repeats and immunoglobulin-like domains 1) Mus musculus
Analyze
Symbol: Lrig1
Name: leucine-rich repeats and immunoglobulin-like domains 1
RGD ID: 1315603
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; central nervous system; integumental system; respiratory system; and sensory organ. Orthologous to human LRIG1 (leucine rich repeats and immunoglobulin like domains 1); INTERACTS WITH 1,1-dichloroethene; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D6Bwg0781e; Im; Img; integral membrane glycoprotein; leucine-rich repeats and immunoglobulin-like domains protein 1; LIG; LIG-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39694,581,510 - 94,677,326 (-)NCBIGRCm39mm39
GRCm39 Ensembl694,581,510 - 94,677,139 (-)Ensembl
GRCm38694,604,529 - 94,700,298 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl694,604,529 - 94,700,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv37694,554,523 - 94,650,139 (-)NCBIGRCm37mm9NCBIm37
MGSCv36694,569,992 - 94,665,608 (-)NCBImm8
Celera696,504,989 - 96,600,773 (-)NCBICelera
Cytogenetic Map6D2NCBI
cM Map643.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
clothianidin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
cytarabine  (ISO)
dexamethasone  (EXP,ISO)
dioxygen  (EXP)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
indometacin  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
panobinostat  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory brainstem response  (IAGP)
abnormal auditory brainstem response waveform shape  (IAGP)
abnormal behavior  (IEA)
abnormal crypts of Lieberkuhn morphology  (IAGP)
abnormal distortion product otoacoustic emission  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal facial morphology  (IAGP)
abnormal hair cycle  (IAGP)
abnormal hair shedding  (IAGP)
abnormal inner ear development  (IAGP)
abnormal keratinocyte differentiation  (IAGP)
abnormal lateral semicircular canal morphology  (IAGP)
abnormal otolith organ morphology  (IAGP)
abnormal posterior semicircular canal morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin adnexa morphology  (IAGP)
abnormal skin condition  (IAGP)
abnormal skin morphology  (IAGP)
abnormal tail morphology  (IEA)
alopecia  (IAGP)
circling  (IAGP)
decreased body length  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased circulating alanine transaminase level  (IAGP)
decreased circulating alkaline phosphatase level  (IAGP)
decreased circulating aspartate transaminase level  (IAGP)
decreased posterior semicircular canal size  (IAGP)
decreased total body fat amount  (IAGP)
disheveled coat  (IAGP)
distorted hair follicle pattern  (IAGP)
epidermal hyperplasia  (IAGP)
fusion of vertebral arches  (IAGP)
hyperkeratosis  (IAGP)
increased intestinal adenoma incidence  (IAGP)
increased keratinocyte proliferation  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
microphthalmia  (IAGP)
no abnormal phenotype detected  (IAGP)
parakeratosis  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
psoriasis  (IAGP)
scaly skin  (IAGP)
thick epidermis  (IAGP)
thick tail  (IAGP)
vertebral fusion  (IAGP)
References

Additional References at PubMed
PMID:8798419   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11414704   PMID:12067728   PMID:12477932   PMID:14610273   PMID:14681479   PMID:14691545  
PMID:15345710   PMID:16141072   PMID:16141073   PMID:18171921   PMID:18480165   PMID:18848646   PMID:18922900   PMID:19004851   PMID:19427292   PMID:20223988   PMID:21677750   PMID:21873635  
PMID:22008794   PMID:22227295   PMID:22388892   PMID:22464327   PMID:23208928   PMID:23271346   PMID:23487314   PMID:23558895   PMID:23954751   PMID:24086156   PMID:24198274   PMID:24316976  
PMID:24336287   PMID:24652767   PMID:24721909   PMID:24735878   PMID:24833705   PMID:25340873   PMID:25358790   PMID:25480918   PMID:25794708   PMID:25826454   PMID:25842978   PMID:25921371  
PMID:26015543   PMID:26073039   PMID:26590425   PMID:26651291   PMID:26753643   PMID:26837596   PMID:26930384   PMID:26935556   PMID:27287810   PMID:28094771   PMID:28099467   PMID:28494873  
PMID:28504705   PMID:28814482   PMID:29153838   PMID:29249464   PMID:29395868   PMID:29643507   PMID:30248341   PMID:30323305   PMID:30472156   PMID:30578323   PMID:30585163   PMID:30886049  
PMID:30956133   PMID:31059499   PMID:31488717   PMID:31564613   PMID:31796338   PMID:31813825   PMID:32325033   PMID:32515350  


Genomics

Comparative Map Data
Lrig1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39694,581,510 - 94,677,326 (-)NCBIGRCm39mm39
GRCm39 Ensembl694,581,510 - 94,677,139 (-)Ensembl
GRCm38694,604,529 - 94,700,298 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl694,604,529 - 94,700,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv37694,554,523 - 94,650,139 (-)NCBIGRCm37mm9NCBIm37
MGSCv36694,569,992 - 94,665,608 (-)NCBImm8
Celera696,504,989 - 96,600,773 (-)NCBICelera
Cytogenetic Map6D2NCBI
cM Map643.15NCBI
LRIG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl366,378,797 - 66,501,263 (-)EnsemblGRCh38hg38GRCh38
GRCh38366,378,797 - 66,501,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37366,429,221 - 66,551,545 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36366,511,911 - 66,633,535 (-)NCBINCBI36hg18NCBI36
Build 34366,511,911 - 66,633,535NCBI
Celera366,375,063 - 66,496,661 (-)NCBI
Cytogenetic Map3p14.1NCBI
HuRef366,446,562 - 66,568,141 (-)NCBIHuRef
CHM1_1366,380,462 - 66,502,073 (-)NCBICHM1_1
Lrig1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24127,130,899 - 127,230,956 (-)NCBI
Rnor_6.0 Ensembl4126,617,244 - 126,644,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04126,615,998 - 126,717,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04191,129,832 - 191,231,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44128,919,630 - 129,082,488 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14129,164,514 - 129,327,329 (-)NCBI
Celera4116,039,860 - 116,139,967 (-)NCBICelera
Cytogenetic Map4q34NCBI
Lrig1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542121,108,611 - 21,218,016 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542121,108,609 - 21,219,293 (+)NCBIChiLan1.0ChiLan1.0
LRIG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1367,642,858 - 67,764,513 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl367,644,289 - 67,765,194 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0366,271,849 - 66,394,056 (-)NCBIMhudiblu_PPA_v0panPan3
LRIG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2024,890,191 - 25,032,647 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12024,907,904 - 25,033,841 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Lrig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936637108,433 - 238,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1347,909,011 - 48,027,384 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11347,909,002 - 48,027,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21352,651,474 - 52,770,251 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRIG1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12227,401,399 - 27,573,395 (-)NCBI
ChlSab1.1 Ensembl2227,402,851 - 27,528,331 (-)Ensembl
Lrig1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624773712,193 - 850,086 (-)NCBI

Position Markers
AW557176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38694,604,072 - 94,604,180UniSTSGRCm38
MGSCv37694,554,066 - 94,554,174UniSTSGRCm37
Celera696,504,532 - 96,504,640UniSTS
Cytogenetic Map6D3UniSTS
Cytogenetic Map6D2UniSTS
cM Map639.0UniSTS
Whitehead/MRC_RH6976.33UniSTS
RH125079  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38694,604,428 - 94,604,536UniSTSGRCm38
MGSCv37694,554,422 - 94,554,530UniSTSGRCm37
Celera696,504,888 - 96,504,996UniSTS
Cytogenetic Map6D3UniSTS
Cytogenetic Map6D2UniSTS
cM Map639.0UniSTS
Lrig1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38694,605,760 - 94,607,314UniSTSGRCm38
MGSCv37694,555,754 - 94,557,308UniSTSGRCm37
Celera696,506,250 - 96,507,737UniSTS
Cytogenetic Map6D2UniSTS
cM Map639.0UniSTS
D5Bwg0834e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38694,604,371 - 94,604,537UniSTSGRCm38
MGSCv37694,554,365 - 94,554,531UniSTSGRCm37
Celera696,504,831 - 96,504,997UniSTS
Cytogenetic Map6D2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map6D3UniSTS
cM Map568.0UniSTS
cM Map639.0UniSTS
Lrig1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1186
Count of miRNA genes:579
Interacting mature miRNAs:679
Transcripts:ENSMUST00000032105, ENSMUST00000101126, ENSMUST00000124165, ENSMUST00000141014, ENSMUST00000150811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF465831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN699905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D78572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032105   ⟹   ENSMUSP00000032105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,604,534 - 94,700,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000101126   ⟹   ENSMUSP00000098686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,604,536 - 94,700,137 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124165
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,628,075 - 94,678,865 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141014
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,625,034 - 94,680,630 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150811
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,626,450 - 94,655,525 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,604,680 - 94,605,393 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204645   ⟹   ENSMUSP00000144963
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl694,604,529 - 94,700,158 (-)Ensembl
RefSeq Acc Id: NM_001355269   ⟹   NP_001342198
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,677,126 (-)NCBI
GRCm38694,604,529 - 94,700,145 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008377   ⟹   NP_032403
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,677,126 (-)NCBI
GRCm38694,604,529 - 94,700,145 (-)NCBI
MGSCv37694,554,523 - 94,650,139 (-)RGD
Celera696,504,989 - 96,600,773 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505622   ⟹   XP_006505685
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,657,630 (-)NCBI
GRCm38694,604,529 - 94,680,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255195   ⟹   XP_030111055
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,659,074 (-)NCBI
GRCm38694,604,529 - 94,682,093 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255196   ⟹   XP_030111056
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,677,205 (-)NCBI
GRCm38694,604,529 - 94,700,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255197   ⟹   XP_030111057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,607,609 (-)NCBI
GRCm38694,604,529 - 94,630,628 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255198   ⟹   XP_030111058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,616,837 (-)NCBI
GRCm38694,604,529 - 94,639,856 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165882   ⟹   XP_036021775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,612,054 (-)NCBI
RefSeq Acc Id: XR_377425
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39694,581,510 - 94,677,326 (-)NCBI
GRCm38694,604,529 - 94,700,298 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032403   ⟸   NM_008377
- Peptide Label: isoform 1 precursor
- UniProtKB: P70193 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505685   ⟸   XM_006505622
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030111056   ⟸   XM_030255196
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001342198   ⟸   NM_001355269
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: XP_030111055   ⟸   XM_030255195
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030111058   ⟸   XM_030255198
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030111057   ⟸   XM_030255197
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000032105   ⟸   ENSMUST00000032105
RefSeq Acc Id: ENSMUSP00000144963   ⟸   ENSMUST00000204645
RefSeq Acc Id: ENSMUSP00000098686   ⟸   ENSMUST00000101126
RefSeq Acc Id: XP_036021775   ⟸   XM_036165882
- Peptide Label: isoform X1
Protein Domains
Ig-like   Ig-like C2-type   LRRCT   LRRNT

Promoters
RGD ID:6839579
Promoter ID:MM_KWN:46974
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4
Transcripts:OTTMUST00000060277
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36694,605,166 - 94,606,477 (-)MPROMDB
RGD ID:6839581
Promoter ID:MM_KWN:46975
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4
Transcripts:OTTMUST00000060279
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36694,628,456 - 94,629,857 (-)MPROMDB
RGD ID:6839580
Promoter ID:MM_KWN:46976
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Kidney
Transcripts:OTTMUST00000060278
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36694,630,386 - 94,631,607 (-)MPROMDB
RGD ID:6839578
Promoter ID:MM_KWN:46977
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000032105,   NM_008377
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36694,649,821 - 94,651,027 (-)MPROMDB
RGD ID:6890496
Promoter ID:EPDNEW_M8699
Type:multiple initiation site
Name:Lrig1_1
Description:Mus musculus leucine-rich repeats and immunoglobulin-like domains1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38694,700,164 - 94,700,224EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107935 AgrOrtholog
Ensembl Genes ENSMUSG00000030029 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000032105 UniProtKB/Swiss-Prot
  ENSMUSP00000098686 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144963 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032105 UniProtKB/Swiss-Prot
  ENSMUST00000101126 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204645 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16206 UniProtKB/Swiss-Prot
MGD MGI:107935 ENTREZGENE
NCBI Gene 16206 ENTREZGENE
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrig1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZP45_MOUSE UniProtKB/TrEMBL
  LRIG1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary E9QL89 UniProtKB/Swiss-Prot