S100a16 (S100 calcium binding protein A16) - Rat Genome Database

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Gene: S100a16 (S100 calcium binding protein A16) Mus musculus
Analyze
Symbol: S100a16
Name: S100 calcium binding protein A16
RGD ID: 1315578
MGI Page MGI
Description: Enables calcium ion binding activity and identical protein binding activity. Acts upstream of or within response to calcium ion. Located in cytoplasm and nucleus. Is expressed in several structures, including brain ventricular layer; gut; heart; nose; and urinary system. Orthologous to human S100A16 (S100 calcium binding protein A16).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2300002L21Rik; AI325039; AI663996; DT1P1A7; S100F
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,444,561 - 90,450,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,444,561 - 90,450,458 (+)EnsemblGRCm39 Ensembl
GRCm38390,537,254 - 90,543,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,537,254 - 90,543,151 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,345,145 - 90,347,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,627,150 - 90,629,078 (+)NCBIMGSCv36mm8
Celera390,579,766 - 90,581,694 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14684152   PMID:15203200   PMID:15336958   PMID:16141072   PMID:16141073   PMID:16938360  
PMID:17030513   PMID:21266506   PMID:21267068   PMID:21308776   PMID:21677750   PMID:21871643   PMID:21873635   PMID:23526364   PMID:28705898   PMID:31069793   PMID:31399502   PMID:34321999  
PMID:34645789   PMID:35279748   PMID:35364055   PMID:35914619   PMID:37151881   PMID:37928262  


Genomics

Comparative Map Data
S100a16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,444,561 - 90,450,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,444,561 - 90,450,458 (+)EnsemblGRCm39 Ensembl
GRCm38390,537,254 - 90,543,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,537,254 - 90,543,151 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,345,145 - 90,347,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,627,150 - 90,629,078 (+)NCBIMGSCv36mm8
Celera390,579,766 - 90,581,694 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.25NCBI
S100A16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,606,883 - 153,613,137 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,606,886 - 153,613,145 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,579,359 - 153,585,613 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,845,991 - 151,852,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,392,439 - 150,398,587NCBI
Celera1126,650,891 - 126,657,038 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,942,655 - 124,948,802 (-)NCBIHuRef
CHM1_11154,975,340 - 154,981,487 (-)NCBICHM1_1
T2T-CHM13v2.01152,744,143 - 152,750,397 (-)NCBIT2T-CHM13v2.0
S100a16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,313,986 - 178,319,696 (+)NCBIGRCr8
mRatBN7.22176,016,405 - 176,022,117 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,016,268 - 176,022,117 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,156,468 - 183,162,244 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,178,731 - 181,184,511 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,778,980 - 175,784,750 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,923,140 - 189,928,850 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,922,996 - 189,928,848 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,356,226 - 209,361,935 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,807,564 - 182,813,276 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,759,870 - 182,763,374 (+)NCBI
Celera2169,951,445 - 169,957,171 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100a16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545254,370 - 260,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545254,370 - 260,471 (-)NCBIChiLan1.0ChiLan1.0
S100A16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,221,000 - 96,227,120 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,959,841 - 95,962,311 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,961,978 - 128,968,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,590,360 - 132,596,532 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,590,360 - 132,592,827 (-)Ensemblpanpan1.1panPan2
S100A16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,447,422 - 43,452,625 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,447,494 - 43,452,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,940,396 - 42,945,609 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,397,110 - 43,402,323 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,397,192 - 43,401,828 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,099,412 - 43,104,625 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,153,079 - 43,158,311 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,436,925 - 43,442,138 (+)NCBIUU_Cfam_GSD_1.0
S100a16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,376,662 - 24,382,902 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,406,962 - 3,409,717 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,407,044 - 3,413,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,030,930 - 96,038,602 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,960,698 - 104,968,318 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,192,117 - 10,198,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,569,260 - 9,575,464 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100a16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,532,292 - 3,538,640 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,532,876 - 3,538,530 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S100a16
166 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1554
Count of miRNA genes:396
Interacting mature miRNAs:441
Transcripts:ENSMUST00000098910, ENSMUST00000098911, ENSMUST00000107331, ENSMUST00000107333, ENSMUST00000107334, ENSMUST00000107335, ENSMUST00000127008, ENSMUST00000150833
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse

Markers in Region
RH136200  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,542,000 - 90,542,397UniSTSGRCm38
MGSCv37390,345,922 - 90,346,319UniSTSGRCm37
Celera390,580,543 - 90,580,940UniSTS
Cytogenetic Map3F1-F2UniSTS
AI325039  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38390,542,745 - 90,542,925UniSTSGRCm38
MGSCv37390,346,667 - 90,346,847UniSTSGRCm37
Celera390,581,288 - 90,581,468UniSTS
Cytogenetic Map3F1-F2UniSTS
Whitehead/MRC_RH31016.28UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA433545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI841112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY221962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE137327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA323788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK623434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX213938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000098910   ⟹   ENSMUSP00000096509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,448,468 - 90,450,458 (+)Ensembl
GRCm38.p6 Ensembl390,541,161 - 90,543,151 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098911   ⟹   ENSMUSP00000096510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,444,561 - 90,450,455 (+)Ensembl
GRCm38.p6 Ensembl390,537,254 - 90,543,148 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107331   ⟹   ENSMUSP00000102954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,448,456 - 90,450,169 (+)Ensembl
GRCm38.p6 Ensembl390,541,149 - 90,542,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107333   ⟹   ENSMUSP00000102956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,448,453 - 90,450,055 (+)Ensembl
GRCm38.p6 Ensembl390,541,146 - 90,542,748 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107334   ⟹   ENSMUSP00000102957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,446,192 - 90,450,234 (+)Ensembl
GRCm38.p6 Ensembl390,538,885 - 90,542,927 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107335   ⟹   ENSMUSP00000102958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,444,622 - 90,450,321 (+)Ensembl
GRCm38.p6 Ensembl390,537,315 - 90,543,014 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,444,632 - 90,450,042 (+)Ensembl
GRCm38.p6 Ensembl390,537,325 - 90,542,735 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150833   ⟹   ENSMUSP00000119168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl390,446,595 - 90,449,736 (+)Ensembl
GRCm38.p6 Ensembl390,539,288 - 90,542,429 (+)Ensembl
RefSeq Acc Id: NM_001356605   ⟹   NP_001343534
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,444,561 - 90,450,458 (+)NCBI
GRCm38390,537,254 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356606   ⟹   NP_001343535
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,444,561 - 90,450,458 (+)NCBI
GRCm38390,537,254 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356607   ⟹   NP_001343536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,444,561 - 90,450,458 (+)NCBI
GRCm38390,537,254 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356608   ⟹   NP_001343537
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,444,561 - 90,450,458 (+)NCBI
GRCm38390,537,254 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356609   ⟹   NP_001343538
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,448,453 - 90,450,458 (+)NCBI
GRCm38390,541,146 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356610   ⟹   NP_001343539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,448,453 - 90,450,458 (+)NCBI
GRCm38390,541,146 - 90,543,151 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026416   ⟹   NP_080692
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,448,468 - 90,450,458 (+)NCBI
GRCm38390,541,161 - 90,543,151 (+)NCBI
MGSCv37390,345,145 - 90,347,073 (+)RGD
Celera390,579,766 - 90,581,694 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163254   ⟹   XP_036019147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,445,094 - 90,450,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163255   ⟹   XP_036019148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,447,081 - 90,450,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163257   ⟹   XP_036019150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39390,445,438 - 90,450,458 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001343534 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343535 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343536 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343537 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343538 (Get FASTA)   NCBI Sequence Viewer  
  NP_001343539 (Get FASTA)   NCBI Sequence Viewer  
  NP_080692 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019147 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019148 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019150 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH20031 (Get FASTA)   NCBI Sequence Viewer  
  AAP46153 (Get FASTA)   NCBI Sequence Viewer  
  BAB26486 (Get FASTA)   NCBI Sequence Viewer  
  BAE35676 (Get FASTA)   NCBI Sequence Viewer  
  BAE35835 (Get FASTA)   NCBI Sequence Viewer  
  BAE39183 (Get FASTA)   NCBI Sequence Viewer  
  EDL15119 (Get FASTA)   NCBI Sequence Viewer  
  EDL15120 (Get FASTA)   NCBI Sequence Viewer  
  EDL15121 (Get FASTA)   NCBI Sequence Viewer  
  EDL15122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000096509
  ENSMUSP00000096509.3
  ENSMUSP00000096510
  ENSMUSP00000096510.4
  ENSMUSP00000102954
  ENSMUSP00000102954.2
  ENSMUSP00000102956
  ENSMUSP00000102956.2
  ENSMUSP00000102957
  ENSMUSP00000102957.2
  ENSMUSP00000102958.2
  ENSMUSP00000119168.2
GenBank Protein Q9D708 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_080692   ⟸   NM_026416
- UniProtKB: Q3TVE3 (UniProtKB/Swiss-Prot),   Q9D708 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343537   ⟸   NM_001356608
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343536   ⟸   NM_001356607
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343534   ⟸   NM_001356605
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343535   ⟸   NM_001356606
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343538   ⟸   NM_001356609
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343539   ⟸   NM_001356610
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000119168   ⟸   ENSMUST00000150833
RefSeq Acc Id: ENSMUSP00000096509   ⟸   ENSMUST00000098910
RefSeq Acc Id: ENSMUSP00000096510   ⟸   ENSMUST00000098911
RefSeq Acc Id: ENSMUSP00000102954   ⟸   ENSMUST00000107331
RefSeq Acc Id: ENSMUSP00000102957   ⟸   ENSMUST00000107334
RefSeq Acc Id: ENSMUSP00000102956   ⟸   ENSMUST00000107333
RefSeq Acc Id: ENSMUSP00000102958   ⟸   ENSMUST00000107335
RefSeq Acc Id: XP_036019147   ⟸   XM_036163254
- Peptide Label: isoform X1
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036019150   ⟸   XM_036163257
- Peptide Label: isoform X1
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036019148   ⟸   XM_036163255
- Peptide Label: isoform X1
- UniProtKB: Q9D708 (UniProtKB/Swiss-Prot),   Q3TVE3 (UniProtKB/Swiss-Prot)
Protein Domains
EF-hand   S100/CaBP-9k-type calcium binding subdomain

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D708-F1-model_v2 AlphaFold Q9D708 1-124 view protein structure

Promoters
RGD ID:6834398
Promoter ID:MM_KWN:35042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000107335,   OTTMUST00000052238,   UC008QCW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,341,091 - 90,341,591 (+)MPROMDB
RGD ID:6834396
Promoter ID:MM_KWN:35044
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000098910,   ENSMUST00000107331,   ENSMUST00000107333
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36390,344,824 - 90,345,324 (+)MPROMDB
RGD ID:6881358
Promoter ID:EPDNEW_M4130
Type:initiation region
Name:S100a16_1
Description:Mus musculus S100 calcium binding protein A16 , transcript variant7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4131  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,537,343 - 90,537,403EPDNEW
RGD ID:6881360
Promoter ID:EPDNEW_M4131
Type:initiation region
Name:S100a16_2
Description:Mus musculus S100 calcium binding protein A16 , transcript variant7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4130  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38390,541,164 - 90,541,224EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915110 AgrOrtholog
Ensembl Genes ENSMUSG00000074457 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098910 ENTREZGENE
  ENSMUST00000098910.3 UniProtKB/Swiss-Prot
  ENSMUST00000098911 ENTREZGENE
  ENSMUST00000098911.10 UniProtKB/Swiss-Prot
  ENSMUST00000107331 ENTREZGENE
  ENSMUST00000107331.8 UniProtKB/Swiss-Prot
  ENSMUST00000107333 ENTREZGENE
  ENSMUST00000107333.8 UniProtKB/Swiss-Prot
  ENSMUST00000107334 ENTREZGENE
  ENSMUST00000107334.8 UniProtKB/Swiss-Prot
  ENSMUST00000107335.2 UniProtKB/Swiss-Prot
  ENSMUST00000150833.8 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67860 UniProtKB/Swiss-Prot
MGD MGI:1915110 ENTREZGENE
NCBI Gene 67860 ENTREZGENE
PANTHER PTHR11639:SF76 UniProtKB/Swiss-Prot
  S100 CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot
Pfam S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen S100a16 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
SMART S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z2Y6_MOUSE UniProtKB/TrEMBL
  Q3TVE3 ENTREZGENE
  Q9D708 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TVE3 UniProtKB/Swiss-Prot