C87436 (expressed sequence C87436) - Rat Genome Database
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Gene: C87436 (expressed sequence C87436) Mus musculus
Analyze
Symbol: C87436
Name: expressed sequence C87436
RGD ID: 1315541
MGI Page MGI
Description: Orthologous to human C2orf42 (chromosome 2 open reading frame 42); INTERACTS WITH 1,2-dimethylhydrazine; benzo[a]pyrene; silicon dioxide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC232196; MGC25529; uncharacterized protein C2orf42 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,411,616 - 86,447,370 (+)NCBIGRCm39mm39
GRCm39 Ensembl686,415,356 - 86,450,482 (+)Ensembl
GRCm38686,434,637 - 86,470,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,438,374 - 86,473,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,388,392 - 86,420,382 (+)NCBIGRCm37mm9NCBIm37
MGSCv36686,404,032 - 86,436,019 (+)NCBImm8
Celera688,376,025 - 88,408,107 (+)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
C87436
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,411,616 - 86,447,370 (+)NCBIGRCm39mm39
GRCm39 Ensembl686,415,356 - 86,450,482 (+)Ensembl
GRCm38686,434,637 - 86,470,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,438,374 - 86,473,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,388,392 - 86,420,382 (+)NCBIGRCm37mm9NCBIm37
MGSCv36686,404,032 - 86,436,019 (+)NCBImm8
Celera688,376,025 - 88,408,107 (+)NCBICelera
Cytogenetic Map6D1NCBI
C2orf42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl270,149,880 - 70,248,615 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl270,149,885 - 70,248,615 (-)EnsemblGRCh38hg38GRCh38
GRCh38270,149,885 - 70,191,026 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37270,377,017 - 70,418,151 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,230,521 - 70,271,655 (-)NCBINCBI36hg18NCBI36
Celera270,227,826 - 70,268,958 (-)NCBI
Cytogenetic Map2p13.3NCBI
HuRef270,113,568 - 70,154,946 (-)NCBIHuRef
CHM1_1270,306,657 - 70,347,788 (-)NCBICHM1_1
RGD1306746
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24118,887,688 - 118,916,808 (+)NCBI
Rnor_6.0 Ensembl4118,243,132 - 118,271,768 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04118,240,681 - 118,271,771 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04182,814,382 - 182,843,021 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,625,443 - 120,654,118 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14120,874,632 - 120,898,185 (+)NCBI
Celera4107,859,772 - 107,888,450 (+)NCBICelera
Cytogenetic Map4q34NCBI
LOC102008871
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,932,210 - 14,977,660 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,932,677 - 14,975,332 (+)NCBIChiLan1.0ChiLan1.0
C2AH2orf42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A71,321,452 - 71,362,970 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,321,458 - 71,362,970 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A70,205,396 - 70,247,486 (-)NCBIMhudiblu_PPA_v0panPan3
C10H2orf42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1068,733,875 - 68,751,353 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11068,733,869 - 68,761,141 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH2orf42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649114,340,294 - 14,374,670 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,289,635 - 72,320,503 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,289,584 - 72,320,503 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,738,723 - 75,762,899 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf42
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,914,542 - 36,953,816 (+)NCBI
ChlSab1.1 Ensembl1436,914,613 - 36,954,083 (+)Ensembl
CUNH2orf42
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247623,233,851 - 3,271,914 (+)NCBI

Position Markers
C87436  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38686,470,067 - 86,470,230UniSTSGRCm38
MGSCv37686,420,061 - 86,420,224UniSTSGRCm37
Celera688,407,786 - 88,407,949UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6896.77UniSTS
RH139896  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38686,469,943 - 86,470,134UniSTSGRCm38
MGSCv37686,419,937 - 86,420,128UniSTSGRCm37
Celera688,407,662 - 88,407,853UniSTS
Cytogenetic Map6D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1300
Count of miRNA genes:456
Interacting mature miRNAs:527
Transcripts:ENSMUST00000050497, ENSMUST00000113698, ENSMUST00000113700, ENSMUST00000133753, ENSMUST00000141972, ENSMUST00000143430, ENSMUST00000148768
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_157222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE332233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF460653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU613064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY123950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY237827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD354932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000050497   ⟹   ENSMUSP00000057461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,374 - 86,470,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113698   ⟹   ENSMUSP00000109328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,727 - 86,470,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113700   ⟹   ENSMUSP00000109330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,692 - 86,470,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133753   ⟹   ENSMUSP00000121520
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,443,813 - 86,473,500 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141972   ⟹   ENSMUSP00000115916
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,692 - 86,470,388 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143430
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,708 - 86,439,488 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,464,040 - 86,469,947 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203568   ⟹   ENSMUSP00000144724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl686,438,389 - 86,445,821 (+)Ensembl
RefSeq Acc Id: NM_001243741   ⟹   NP_001230670
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,628 - 86,447,370 (+)NCBI
GRCm38686,438,646 - 86,470,388 (+)NCBI
Celera688,376,025 - 88,408,107 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001243742   ⟹   NP_001230671
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,628 - 86,447,370 (+)NCBI
GRCm38686,438,646 - 86,470,388 (+)NCBI
Celera688,376,025 - 88,408,107 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364555   ⟹   NP_001351484
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,358 - 86,447,370 (+)NCBI
GRCm38686,438,376 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364556   ⟹   NP_001351485
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,656 - 86,447,370 (+)NCBI
GRCm38686,438,674 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364557   ⟹   NP_001351486
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,656 - 86,447,370 (+)NCBI
GRCm38686,438,674 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001364558   ⟹   NP_001351487
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,358 - 86,447,370 (+)NCBI
GRCm38686,438,376 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: NM_146170   ⟹   NP_666282
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,380 - 86,447,370 (+)NCBI
GRCm38686,438,398 - 86,470,388 (+)NCBI
MGSCv37686,388,392 - 86,420,382 (+)RGD
Celera688,376,025 - 88,408,107 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_157222
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,415,656 - 86,447,370 (+)NCBI
GRCm38686,438,674 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505973   ⟹   XP_006506036
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,618 - 86,447,370 (+)NCBI
GRCm38686,434,639 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505975   ⟹   XP_006506038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,618 - 86,447,370 (+)NCBI
GRCm38686,434,639 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255339   ⟹   XP_030111199
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
GRCm38686,434,637 - 86,470,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166048   ⟹   XP_036021941
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,618 - 86,447,370 (+)NCBI
RefSeq Acc Id: XR_004942938
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
RefSeq Acc Id: XR_004942939
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
RefSeq Acc Id: XR_004942940
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
RefSeq Acc Id: XR_004942941
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
RefSeq Acc Id: XR_377440
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39686,411,616 - 86,447,370 (+)NCBI
GRCm38686,434,637 - 86,470,388 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_666282   ⟸   NM_146170
- Peptide Label: isoform 1
- UniProtKB: Q8R3C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230670   ⟸   NM_001243741
- Peptide Label: isoform 2
- UniProtKB: Q8R3C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230671   ⟸   NM_001243742
- Peptide Label: isoform 1
- UniProtKB: Q8R3C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506036   ⟸   XM_006505973
- Peptide Label: isoform X1
- UniProtKB: Q8R3C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506038   ⟸   XM_006505975
- Peptide Label: isoform X1
- UniProtKB: Q8R3C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030111199   ⟸   XM_030255339
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001351487   ⟸   NM_001364558
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001351484   ⟸   NM_001364555
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001351485   ⟸   NM_001364556
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001351486   ⟸   NM_001364557
- Peptide Label: isoform 1
RefSeq Acc Id: ENSMUSP00000144724   ⟸   ENSMUST00000203568
RefSeq Acc Id: ENSMUSP00000109328   ⟸   ENSMUST00000113698
RefSeq Acc Id: ENSMUSP00000109330   ⟸   ENSMUST00000113700
RefSeq Acc Id: ENSMUSP00000121520   ⟸   ENSMUST00000133753
RefSeq Acc Id: ENSMUSP00000057461   ⟸   ENSMUST00000050497
RefSeq Acc Id: ENSMUSP00000115916   ⟸   ENSMUST00000141972
RefSeq Acc Id: XP_036021941   ⟸   XM_036166048
- Peptide Label: isoform X1
Protein Domains
zf-tcix

Promoters
RGD ID:6839034
Promoter ID:MM_KWN:46735
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113698,   ENSMUST00000113700,   NR_027369,   OTTMUST00000058848,   OTTMUST00000058850,   OTTMUST00000058853,   UC009CRV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36686,387,476 - 86,389,222 (+)MPROMDB
RGD ID:6890280
Promoter ID:EPDNEW_M8591
Type:initiation region
Name:C87436_2
Description:Mus musculus expressed sequence C87436 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8592  EPDNEW_M8593  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,438,376 - 86,438,436EPDNEW
RGD ID:6890282
Promoter ID:EPDNEW_M8592
Type:initiation region
Name:C87436_1
Description:Mus musculus expressed sequence C87436 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8591  EPDNEW_M8593  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,438,696 - 86,438,756EPDNEW
RGD ID:6890284
Promoter ID:EPDNEW_M8593
Type:initiation region
Name:C87436_3
Description:Mus musculus expressed sequence C87436 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8591  EPDNEW_M8592  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38686,443,841 - 86,443,901EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2141787 AgrOrtholog
Ensembl Genes ENSMUSG00000046679 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000057461 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109328 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109330 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115916 UniProtKB/Swiss-Prot
  ENSMUSP00000121520 UniProtKB/Swiss-Prot
  ENSMUSP00000144724 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050497 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113698 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113700 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133753 UniProtKB/Swiss-Prot
  ENSMUST00000141972 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203568 UniProtKB/TrEMBL
InterPro C2orf42 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zf-tcix UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232196 UniProtKB/Swiss-Prot
MGD MGI:2141787 ENTREZGENE
NCBI Gene 232196 ENTREZGENE
PANTHER PTHR13518 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-tcix UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen C87436 PhenoGen
UniProt A0A0N4SUL0_MOUSE UniProtKB/TrEMBL
  CB042_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3TB16 UniProtKB/Swiss-Prot
  Q8BK22 UniProtKB/Swiss-Prot
  Q8BXH4 UniProtKB/Swiss-Prot
  Q8R2Z4 UniProtKB/Swiss-Prot