Atxn2 (ataxin 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atxn2 (ataxin 2) Mus musculus
Analyze
Symbol: Atxn2
Name: ataxin 2
RGD ID: 1315365
MGI Page MGI
Description: Predicted to enable epidermal growth factor receptor binding activity and mRNA binding activity. Acts upstream of or within several processes, including homeostasis of number of cells; neuromuscular process; and neuron differentiation. Located in perinuclear region of cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; sensory organ; spleen; and submandibular gland primordium. Used to study spinocerebellar ataxia type 2. Human ortholog(s) of this gene implicated in late onset Parkinson's disease and spinocerebellar ataxia type 2. Orthologous to human ATXN2 (ataxin 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9630045M23Rik; ataxin-2; ATX; ATX2; AW544490; Sc; Sca2; spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant, ataxin 2); spinocerebellar ataxia 2 homolog; spinocerebellar ataxia type 2 protein homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,849,794 - 121,954,372 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,849,400 - 121,954,556 (+)EnsemblGRCm39 Ensembl
GRCm385121,711,609 - 121,814,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,711,337 - 121,816,493 (+)EnsemblGRCm38mm10GRCm38
MGSCv375122,161,618 - 122,264,959 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,972,226 - 122,075,325 (+)NCBIMGSCv36mm8
Celera5118,835,912 - 118,905,112 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7874163   PMID:8896555   PMID:9119401   PMID:9668173   PMID:10349636   PMID:10860780   PMID:10922068   PMID:10973246   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11471052  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:16115810   PMID:16141072   PMID:16141073   PMID:16203087   PMID:16293225   PMID:16602821   PMID:16765103   PMID:18250099   PMID:18602463  
PMID:18799693   PMID:19617910   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22421546   PMID:22922362   PMID:22956915   PMID:23087021   PMID:23335000   PMID:25721894   PMID:25790475  
PMID:25902068   PMID:26490332   PMID:26850065   PMID:26868665   PMID:26951610   PMID:27597528   PMID:27791392   PMID:28405022   PMID:28525545   PMID:28671696   PMID:30194296   PMID:30335684  
PMID:30550785   PMID:31040226   PMID:31138677   PMID:31376479   PMID:31766565   PMID:32024018   PMID:32307524   PMID:32325033   PMID:32932600   PMID:33115537   PMID:33577922   PMID:34350994  
PMID:34815492   PMID:35012549   PMID:35449600   PMID:37072935  


Genomics

Comparative Map Data
Atxn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,849,794 - 121,954,372 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,849,400 - 121,954,556 (+)EnsemblGRCm39 Ensembl
GRCm385121,711,609 - 121,814,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,711,337 - 121,816,493 (+)EnsemblGRCm38mm10GRCm38
MGSCv375122,161,618 - 122,264,959 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,972,226 - 122,075,325 (+)NCBIMGSCv36mm8
Celera5118,835,912 - 118,905,112 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.93NCBI
ATXN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812111,452,214 - 111,599,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12111,443,485 - 111,599,676 (-)EnsemblGRCh38hg38GRCh38
GRCh3712111,890,018 - 112,037,477 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612110,374,401 - 110,521,863 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412110,352,737 - 110,500,200NCBI
Celera12111,516,452 - 111,663,853 (-)NCBICelera
Cytogenetic Map12q24.12NCBI
HuRef12108,904,559 - 109,051,670 (-)NCBIHuRef
CHM1_112111,857,982 - 112,005,420 (-)NCBICHM1_1
T2T-CHM13v2.012111,432,772 - 111,576,594 (-)NCBIT2T-CHM13v2.0
Atxn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,413,657 - 40,509,895 (-)NCBIGRCr8
mRatBN7.21234,754,132 - 34,851,175 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,754,137 - 34,851,479 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01240,264,601 - 40,335,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,266,662 - 40,332,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,137,228 - 42,206,238 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,962,308 - 36,009,114 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11235,822,590 - 35,875,779 (-)NCBI
Celera1236,417,282 - 36,487,757 (-)NCBICelera
Cytogenetic Map12q16NCBI
Atxn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554828,101,917 - 8,216,219 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554828,101,410 - 8,187,815 (-)NCBIChiLan1.0ChiLan1.0
ATXN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210119,518,592 - 119,667,397 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112119,514,982 - 119,663,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012109,024,620 - 109,174,135 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112112,419,337 - 112,565,096 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12112,419,337 - 112,566,360 (-)Ensemblpanpan1.1panPan2
ATXN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,073,667 - 9,188,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,073,809 - 9,188,414 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,236,242 - 9,351,196 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,333,114 - 9,448,244 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,333,120 - 9,448,072 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,289,083 - 9,404,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0269,351,063 - 9,466,629 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,304,823 - 9,419,816 (-)NCBIUU_Cfam_GSD_1.0
Atxn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,291,141 - 155,351,949 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365584,127,477 - 4,232,393 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365584,127,477 - 4,188,307 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1432,665,122 - 32,771,813 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11432,656,537 - 32,772,082 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21434,652,086 - 34,767,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111106,704,532 - 106,860,450 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11106,705,127 - 106,859,337 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037138,238,814 - 138,393,492 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474720,590,906 - 20,727,962 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474720,603,319 - 20,728,346 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atxn2
3543 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2321
Count of miRNA genes:746
Interacting mature miRNAs:991
Transcripts:ENSMUST00000051950, ENSMUST00000159828, ENSMUST00000159928, ENSMUST00000160093, ENSMUST00000160220, ENSMUST00000160462, ENSMUST00000160813, ENSMUST00000160821, ENSMUST00000161064, ENSMUST00000161159, ENSMUST00000161433, ENSMUST00000161836, ENSMUST00000161872, ENSMUST00000162327, ENSMUST00000162459, ENSMUST00000162611, ENSMUST00000162995
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse

Markers in Region
AW544490  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385121,814,424 - 121,814,541UniSTSGRCm38
MGSCv375122,264,433 - 122,264,550UniSTSGRCm37
Celera5118,904,587 - 118,904,704UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51479.98UniSTS
MARC_2373-2374:991932707:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385121,813,518 - 121,814,630UniSTSGRCm38
MGSCv375122,263,527 - 122,264,639UniSTSGRCm37
Celera5118,903,681 - 118,904,793UniSTS
Cytogenetic Map5FUniSTS
MARC_17487-17488:1030377680:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385121,777,957 - 121,779,565UniSTSGRCm38
MGSCv375122,227,966 - 122,229,574UniSTSGRCm37
Celera5118,868,220 - 118,869,829UniSTS
Cytogenetic Map5FUniSTS
Sca2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS
cM MapUN UniSTS
cM Map5 UniSTS
Atxn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS
cM MapUN UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003955602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA178023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF041472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U70670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000051950   ⟹   ENSMUSP00000056715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,849,672 - 121,953,013 (+)Ensembl
GRCm38.p6 Ensembl5121,711,609 - 121,814,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,923,137 - 121,933,485 (+)Ensembl
GRCm38.p6 Ensembl5121,785,074 - 121,795,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,943,642 - 121,952,797 (+)Ensembl
GRCm38.p6 Ensembl5121,805,579 - 121,814,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,939,386 - 121,940,328 (+)Ensembl
GRCm38.p6 Ensembl5121,801,323 - 121,802,265 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160220   ⟹   ENSMUSP00000124059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,949,523 - 121,954,556 (+)Ensembl
GRCm38.p6 Ensembl5121,811,460 - 121,816,493 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160462   ⟹   ENSMUSP00000124092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,944,308 - 121,951,518 (+)Ensembl
GRCm38.p6 Ensembl5121,806,245 - 121,813,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,851,032 - 121,910,850 (+)Ensembl
GRCm38.p6 Ensembl5121,712,969 - 121,772,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160821   ⟹   ENSMUSP00000125647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,915,992 - 121,933,074 (+)Ensembl
GRCm38.p6 Ensembl5121,777,929 - 121,795,011 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161064   ⟹   ENSMUSP00000124070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,887,259 - 121,953,012 (+)Ensembl
GRCm38.p6 Ensembl5121,749,196 - 121,814,949 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161159   ⟹   ENSMUSP00000123833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,940,293 - 121,952,694 (+)Ensembl
GRCm38.p6 Ensembl5121,802,230 - 121,814,631 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,949,028 - 121,949,993 (+)Ensembl
GRCm38.p6 Ensembl5121,810,965 - 121,811,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,948,727 - 121,949,596 (+)Ensembl
GRCm38.p6 Ensembl5121,810,664 - 121,811,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,935,422 - 121,941,498 (+)Ensembl
GRCm38.p6 Ensembl5121,797,359 - 121,803,435 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162327   ⟹   ENSMUSP00000123784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,921,970 - 121,952,783 (+)Ensembl
GRCm38.p6 Ensembl5121,783,907 - 121,814,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,939,809 - 121,949,014 (+)Ensembl
GRCm38.p6 Ensembl5121,801,746 - 121,810,951 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,849,400 - 121,887,246 (+)Ensembl
GRCm38.p6 Ensembl5121,711,337 - 121,749,183 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,940,174 - 121,947,119 (+)Ensembl
GRCm38.p6 Ensembl5121,802,111 - 121,809,056 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199864   ⟹   ENSMUSP00000142984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,949,570 - 121,952,961 (+)Ensembl
GRCm38.p6 Ensembl5121,811,507 - 121,814,898 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,918,255 - 121,921,385 (+)Ensembl
GRCm38.p6 Ensembl5121,780,192 - 121,783,322 (+)Ensembl
RefSeq Acc Id: ENSMUST00000225761   ⟹   ENSMUSP00000153566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,849,923 - 121,919,501 (+)Ensembl
GRCm38.p6 Ensembl5121,711,860 - 121,781,438 (+)Ensembl
RefSeq Acc Id: NM_001359153   ⟹   NP_001346082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,876,902 - 121,953,013 (+)NCBI
GRCm385121,738,532 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009125   ⟹   NP_033151
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,905 - 121,953,013 (+)NCBI
GRCm385121,711,609 - 121,814,950 (+)ENTREZGENE
MGSCv375122,161,618 - 122,264,959 (+)RGD
Celera5118,835,912 - 118,905,112 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530228   ⟹   XP_006530291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,851,037 - 121,954,372 (+)NCBI
GRCm385121,712,684 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320748   ⟹   XP_017176237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320749   ⟹   XP_017176238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017320750   ⟹   XP_017176239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254234   ⟹   XP_030110094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254235   ⟹   XP_030110095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254236   ⟹   XP_030110096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254237   ⟹   XP_030110097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254238   ⟹   XP_030110098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254239   ⟹   XP_030110099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254240   ⟹   XP_030110100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254241   ⟹   XP_030110101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254242   ⟹   XP_030110102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254243   ⟹   XP_030110103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254244   ⟹   XP_030110104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,794 - 121,954,372 (+)NCBI
GRCm385121,711,731 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254245   ⟹   XP_030110105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254246   ⟹   XP_030110106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254247   ⟹   XP_030110107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,850,423 - 121,954,372 (+)NCBI
GRCm385121,712,346 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254248   ⟹   XP_030110108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,878,805 - 121,954,372 (+)NCBI
GRCm385121,740,731 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254249   ⟹   XP_030110109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254250   ⟹   XP_030110110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254251   ⟹   XP_030110111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254252   ⟹   XP_030110112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254253   ⟹   XP_030110113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,850,424 - 121,954,372 (+)NCBI
GRCm385121,712,349 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254254   ⟹   XP_030110114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,878,829 - 121,954,372 (+)NCBI
GRCm385121,740,766 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254255   ⟹   XP_030110115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254256   ⟹   XP_030110116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,850,454 - 121,954,372 (+)NCBI
GRCm385121,712,391 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254257   ⟹   XP_030110117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,722 (+)NCBI
GRCm385121,711,769 - 121,814,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254258   ⟹   XP_030110118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254259   ⟹   XP_030110119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254260   ⟹   XP_030110120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254261   ⟹   XP_030110121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254262   ⟹   XP_030110122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,794 - 121,952,797 (+)NCBI
GRCm385121,711,731 - 121,814,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254263   ⟹   XP_030110123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,831 - 121,952,797 (+)NCBI
GRCm385121,711,768 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254264   ⟹   XP_030110124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,850,458 - 121,954,372 (+)NCBI
GRCm385121,712,350 - 121,814,331 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254265   ⟹   XP_030110125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,794 - 121,952,797 (+)NCBI
GRCm385121,711,731 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254266   ⟹   XP_030110126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,797 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164933   ⟹   XP_036020826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,850,749 - 121,954,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164934   ⟹   XP_036020827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,860 - 121,952,797 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003955602
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,849,832 - 121,954,372 (+)NCBI
GRCm385121,711,769 - 121,814,950 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001346082 (Get FASTA)   NCBI Sequence Viewer  
  NP_033151 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530291 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176237 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176238 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176239 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110094 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110095 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110096 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110097 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110098 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110099 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110100 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110101 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110102 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110103 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110104 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110105 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110106 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110107 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110108 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110109 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110110 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110111 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110112 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110113 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110114 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110115 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110116 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110117 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110118 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110119 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110120 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110121 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110122 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110123 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110124 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110125 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110126 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020826 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020827 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB19202 (Get FASTA)   NCBI Sequence Viewer  
  AAC09275 (Get FASTA)   NCBI Sequence Viewer  
  BAE22712 (Get FASTA)   NCBI Sequence Viewer  
  BAE22757 (Get FASTA)   NCBI Sequence Viewer  
  EDL19713 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000056715
  ENSMUSP00000056715.8
  ENSMUSP00000123784.3
  ENSMUSP00000123833.3
  ENSMUSP00000124059.2
  ENSMUSP00000124070
  ENSMUSP00000124070.2
  ENSMUSP00000124092.2
  ENSMUSP00000125647.2
  ENSMUSP00000142984.2
  ENSMUSP00000153566.2
GenBank Protein O70305 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_033151   ⟸   NM_009125
- Peptide Label: isoform 1
- Sequence:
RefSeq Acc Id: XP_006530291   ⟸   XM_006530228
- Peptide Label: isoform X15
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176238   ⟸   XM_017320749
- Peptide Label: isoform X19
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176239   ⟸   XM_017320750
- Peptide Label: isoform X26
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176237   ⟸   XM_017320748
- Peptide Label: isoform X3
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110125   ⟸   XM_030254265
- Peptide Label: isoform X34
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110122   ⟸   XM_030254262
- Peptide Label: isoform X31
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110104   ⟸   XM_030254244
- Peptide Label: isoform X12
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110123   ⟸   XM_030254263
- Peptide Label: isoform X32
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110111   ⟸   XM_030254251
- Peptide Label: isoform X18
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110118   ⟸   XM_030254258
- Peptide Label: isoform X27
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110101   ⟸   XM_030254241
- Peptide Label: isoform X9
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110112   ⟸   XM_030254252
- Peptide Label: isoform X20
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110120   ⟸   XM_030254260
- Peptide Label: isoform X29
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110126   ⟸   XM_030254266
- Peptide Label: isoform X35
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110103   ⟸   XM_030254243
- Peptide Label: isoform X11
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110105   ⟸   XM_030254245
- Peptide Label: isoform X13
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110119   ⟸   XM_030254259
- Peptide Label: isoform X28
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110110   ⟸   XM_030254250
- Peptide Label: isoform X17
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110121   ⟸   XM_030254261
- Peptide Label: isoform X30
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110096   ⟸   XM_030254236
- Peptide Label: isoform X4
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110097   ⟸   XM_030254237
- Peptide Label: isoform X5
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110098   ⟸   XM_030254238
- Peptide Label: isoform X6
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110099   ⟸   XM_030254239
- Peptide Label: isoform X7
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110109   ⟸   XM_030254249
- Peptide Label: isoform X16
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110115   ⟸   XM_030254255
- Peptide Label: isoform X22
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110117   ⟸   XM_030254257
- Peptide Label: isoform X24
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110094   ⟸   XM_030254234
- Peptide Label: isoform X1
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110095   ⟸   XM_030254235
- Peptide Label: isoform X2
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110100   ⟸   XM_030254240
- Peptide Label: isoform X8
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110102   ⟸   XM_030254242
- Peptide Label: isoform X10
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110106   ⟸   XM_030254246
- Peptide Label: isoform X14
- UniProtKB: E9QM77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110107   ⟸   XM_030254247
- Peptide Label: isoform X15
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110113   ⟸   XM_030254253
- Peptide Label: isoform X21
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110124   ⟸   XM_030254264
- Peptide Label: isoform X33
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110116   ⟸   XM_030254256
- Peptide Label: isoform X23
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346082   ⟸   NM_001359153
- Peptide Label: isoform 2
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110108   ⟸   XM_030254248
- Peptide Label: isoform X15
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030110114   ⟸   XM_030254254
- Peptide Label: isoform X21
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000056715   ⟸   ENSMUST00000051950
RefSeq Acc Id: ENSMUSP00000153566   ⟸   ENSMUST00000225761
RefSeq Acc Id: ENSMUSP00000142984   ⟸   ENSMUST00000199864
RefSeq Acc Id: ENSMUSP00000124059   ⟸   ENSMUST00000160220
RefSeq Acc Id: ENSMUSP00000125647   ⟸   ENSMUST00000160821
RefSeq Acc Id: ENSMUSP00000124092   ⟸   ENSMUST00000160462
RefSeq Acc Id: ENSMUSP00000123784   ⟸   ENSMUST00000162327
RefSeq Acc Id: ENSMUSP00000124070   ⟸   ENSMUST00000161064
RefSeq Acc Id: ENSMUSP00000123833   ⟸   ENSMUST00000161159
RefSeq Acc Id: XP_036020827   ⟸   XM_036164934
- Peptide Label: isoform X25
- UniProtKB: F6U2C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020826   ⟸   XM_036164933
- Peptide Label: isoform X21
- UniProtKB: Q3UX07 (UniProtKB/TrEMBL)
Protein Domains
Ataxin-2 C-terminal   LsmAD   Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70305-F1-model_v2 AlphaFold O70305 1-1285 view protein structure

Promoters
RGD ID:6887940
Promoter ID:EPDNEW_M7421
Type:initiation region
Name:Atxn2_1
Description:Mus musculus ataxin 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385121,711,579 - 121,711,639EPDNEW
RGD ID:6836762
Promoter ID:MM_KWN:43909
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK018874_1700064N11RIK,   ENSMUST00000111761,   ENSMUST00000111762,   NM_009125
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,159,836 - 122,162,782 (-)MPROMDB
RGD ID:6837138
Promoter ID:MM_KWN:43910
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:UC008ZKF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,232,956 - 122,234,307 (+)MPROMDB
RGD ID:6847882
Promoter ID:MM_ACW:39325
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ATXN2.SSEP07-UNSPLICED,   ATXN2.USEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,265,141 - 122,266,837 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277223 AgrOrtholog
Ensembl Genes ENSMUSG00000042605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051950 ENTREZGENE
  ENSMUST00000051950.14 UniProtKB/TrEMBL
  ENSMUST00000160220.2 UniProtKB/TrEMBL
  ENSMUST00000160462.2 UniProtKB/TrEMBL
  ENSMUST00000160821.6 UniProtKB/TrEMBL
  ENSMUST00000161064 ENTREZGENE
  ENSMUST00000161064.8 UniProtKB/TrEMBL
  ENSMUST00000161159.8 UniProtKB/TrEMBL
  ENSMUST00000162327.8 UniProtKB/TrEMBL
  ENSMUST00000199864.2 UniProtKB/TrEMBL
  ENSMUST00000225761.2 UniProtKB/TrEMBL
InterPro Ataxin-2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATXN2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPR047575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LsmAD_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM_dom_ATX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1277223 ENTREZGENE
NCBI Gene 20239 ENTREZGENE
PANTHER PTHR12854 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12854:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LsmAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM-ATX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atxn2 PhenoGen
PROSITE PS52002 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LsmAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JF15_MOUSE UniProtKB/TrEMBL
  A0A286YDU2_MOUSE UniProtKB/TrEMBL
  ATX2_MOUSE UniProtKB/Swiss-Prot
  E9QM77 ENTREZGENE, UniProtKB/TrEMBL
  F6U209_MOUSE UniProtKB/TrEMBL
  F6U2C2 ENTREZGENE, UniProtKB/TrEMBL
  F6U2Q5_MOUSE UniProtKB/TrEMBL
  F6UTV7_MOUSE UniProtKB/TrEMBL
  F6V8M6_MOUSE UniProtKB/TrEMBL
  F7B6X4_MOUSE UniProtKB/TrEMBL
  O70305 ENTREZGENE
  Q3UX07 ENTREZGENE, UniProtKB/TrEMBL
  Q3UX51_MOUSE UniProtKB/TrEMBL
UniProt Secondary P97421 UniProtKB/Swiss-Prot