Rfx1 (regulatory factor X, 1 (influences HLA class II expression)) - Rat Genome Database

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Gene: Rfx1 (regulatory factor X, 1 (influences HLA class II expression)) Mus musculus
Analyze
Symbol: Rfx1
Name: regulatory factor X, 1 (influences HLA class II expression)
RGD ID: 1315269
MGI Page MGI
Description: Enables DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Is expressed in several structures, including central nervous system; dorsal root ganglion; early conceptus; eye; and genitourinary system. Orthologous to human RFX1 (regulatory factor X1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI047719; AI385641; MHC class II regulatory factor RFX1; regulatory factor X 1; transcription factor RFX1; vregulatory factor X, 1 (influences HLA class II expression)
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,789,787 - 84,823,630 (+)NCBIGRCm39mm39
GRCm39 Ensembl884,793,463 - 84,823,621 (+)Ensembl
GRCm38884,063,564 - 84,097,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,066,834 - 84,096,992 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,590,735 - 86,620,891 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,956,971 - 86,987,107 (+)NCBImm8
Celera888,362,533 - 88,392,882 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:8224874   PMID:8289803   PMID:8661125   PMID:8889548   PMID:9060410   PMID:10349636   PMID:10501980   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12403718  
PMID:12477932   PMID:12520002   PMID:15226823   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17630394   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19559676   PMID:19596083  
PMID:19887680   PMID:20059953   PMID:20148032   PMID:20189986   PMID:20412781   PMID:21267068   PMID:21744337   PMID:21873635   PMID:21935353   PMID:22496869   PMID:24146794   PMID:24526308  
PMID:24531968   PMID:25058468   PMID:26469318   PMID:27228460   PMID:28003160   PMID:29422534   PMID:30550785   PMID:30914320   PMID:31956913   PMID:32725242  


Genomics

Comparative Map Data
Rfx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,789,787 - 84,823,630 (+)NCBIGRCm39mm39
GRCm39 Ensembl884,793,463 - 84,823,621 (+)Ensembl
GRCm38884,063,564 - 84,097,001 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,066,834 - 84,096,992 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,590,735 - 86,620,891 (+)NCBIGRCm37mm9NCBIm37
MGSCv36886,956,971 - 86,987,107 (+)NCBImm8
Celera888,362,533 - 88,392,882 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.28NCBI
RFX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1913,961,530 - 14,007,039 (-)EnsemblGRCh38hg38GRCh38
GRCh381913,961,530 - 14,007,514 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371914,072,342 - 14,117,132 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,933,352 - 13,978,097 (-)NCBINCBI36hg18NCBI36
Build 341913,933,352 - 13,978,097NCBI
Celera1913,965,968 - 14,010,760 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1913,643,610 - 13,688,862 (-)NCBIHuRef
CHM1_11914,072,882 - 14,117,703 (-)NCBICHM1_1
Rfx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21924,061,336 - 24,092,044 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1924,061,336 - 24,092,044 (-)Ensembl
Rnor_6.01925,181,564 - 25,212,410 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,181,564 - 25,212,410 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,157,621 - 36,189,544 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,745,412 - 25,776,702 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,750,237 - 25,781,527 (-)NCBI
Celera1923,609,413 - 23,640,097 (-)NCBICelera
Cytogenetic Map19q11NCBI
Rfx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,711,008 - 32,731,034 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,710,135 - 32,737,918 (-)NCBIChiLan1.0ChiLan1.0
RFX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11914,252,885 - 14,297,474 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,252,885 - 14,285,420 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01913,523,778 - 13,568,770 (-)NCBIMhudiblu_PPA_v0panPan3
RFX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,488,325 - 48,519,151 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,488,661 - 48,519,370 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,362,531 - 48,393,495 (+)NCBI
ROS_Cfam_1.02049,006,268 - 49,037,242 (+)NCBI
UMICH_Zoey_3.12048,217,276 - 48,248,265 (+)NCBI
UNSW_CanFamBas_1.02048,643,773 - 48,674,716 (+)NCBI
UU_Cfam_GSD_1.02048,886,839 - 48,917,839 (+)NCBI
Rfx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,670,490 - 207,690,672 (+)NCBI
SpeTri2.0NW_0049366592,664,004 - 2,691,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,173,574 - 65,205,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,173,559 - 65,205,551 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,447,808 - 65,479,696 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RFX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,617,135 - 12,662,410 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660746,991,874 - 7,038,060 (+)NCBIVero_WHO_p1.0
Rfx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249011,231,196 - 1,260,008 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH135836  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,095,532 - 84,095,930UniSTSGRCm38
MGSCv37886,619,431 - 86,619,829UniSTSGRCm37
Celera888,391,424 - 88,391,820UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
AI385641  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,096,680 - 84,096,812UniSTSGRCm38
MGSCv37886,620,579 - 86,620,711UniSTSGRCm37
Celera888,392,570 - 88,392,702UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
Whitehead/MRC_RH81001.6UniSTS
RH143601  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,066,715 - 84,066,840UniSTSGRCm38
MGSCv37886,590,614 - 86,590,739UniSTSGRCm37
Celera888,362,412 - 88,362,537UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
UniSTS:235953  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,097,165 - 84,097,352UniSTSGRCm38
MGSCv37886,621,064 - 86,621,251UniSTSGRCm37
Celera888,393,055 - 88,393,242UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
Rfx1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:521
Count of miRNA genes:306
Interacting mature miRNAs:361
Transcripts:ENSMUST00000005600
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB642620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF623008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X76088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000005600   ⟹   ENSMUSP00000005600
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,793,465 - 84,823,621 (+)Ensembl
GRCm38.p6 Ensembl884,066,836 - 84,096,992 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209362
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,793,465 - 84,810,314 (+)Ensembl
GRCm38.p6 Ensembl884,066,836 - 84,083,685 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210660
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,793,465 - 84,815,998 (+)Ensembl
GRCm38.p6 Ensembl884,066,836 - 84,089,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211046   ⟹   ENSMUSP00000147677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,793,463 - 84,823,088 (+)Ensembl
GRCm38.p6 Ensembl884,066,834 - 84,096,459 (+)Ensembl
RefSeq Acc Id: NM_009055   ⟹   NP_033081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,793,465 - 84,823,621 (+)NCBI
GRCm38884,066,836 - 84,096,992 (+)NCBI
MGSCv37886,590,735 - 86,620,891 (+)RGD
Celera888,362,533 - 88,392,882 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530778   ⟹   XP_006530841
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,063,564 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530779   ⟹   XP_006530842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,063,564 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006530780   ⟹   XP_006530843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,063,564 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248329   ⟹   XP_011246631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,063,564 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243361   ⟹   XP_030099221
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,063,564 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243362   ⟹   XP_030099222
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,822,117 (+)NCBI
GRCm38884,063,564 - 84,095,488 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243363   ⟹   XP_030099223
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
GRCm38884,066,424 - 84,097,001 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153839   ⟹   XP_036009732
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,823,630 (+)NCBI
RefSeq Acc Id: XR_003947247
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,789,787 - 84,822,302 (+)NCBI
GRCm38884,063,564 - 84,095,673 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033081   ⟸   NM_009055
- UniProtKB: P48377 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530842   ⟸   XM_006530779
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006530841   ⟸   XM_006530778
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530843   ⟸   XM_006530780
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246631   ⟸   XM_011248329
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030099221   ⟸   XM_030243361
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030099222   ⟸   XM_030243362
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030099223   ⟸   XM_030243363
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000147677   ⟸   ENSMUST00000211046
RefSeq Acc Id: ENSMUSP00000005600   ⟸   ENSMUST00000005600
RefSeq Acc Id: XP_036009732   ⟸   XM_036153839
- Peptide Label: isoform X1
Protein Domains
RFX-type winged-helix

Promoters
RGD ID:8667643
Promoter ID:EPDNEW_M11852
Type:initiation region
Name:Rfx1_1
Description:Mus musculus regulatory factor X, 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,066,863 - 84,066,923EPDNEW
RGD ID:6843677
Promoter ID:MM_KWN:55048
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000005600,   UC009MLT.1,   UC009MLU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,590,071 - 86,590,852 (+)MPROMDB
RGD ID:6848341
Promoter ID:MM_ACW:48198
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Spleen
Transcripts:RFX1.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,618,681 - 86,619,181 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105982 AgrOrtholog
Ensembl Genes ENSMUSG00000031706 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000005600 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147677 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005600 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000211046 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DNA-bd_RFX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RFX-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RFX1_trans_act UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19724 UniProtKB/Swiss-Prot
MGD MGI:105982 ENTREZGENE
NCBI Gene 19724 ENTREZGENE
PANTHER PTHR12619 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RFX1_trans_act UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RFX_DNA_binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rfx1 PhenoGen
PROSITE RFX_DBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GRV3_MOUSE UniProtKB/TrEMBL
  P48377 ENTREZGENE
  Q8BJK3_MOUSE UniProtKB/TrEMBL
  Q8BYY2_MOUSE UniProtKB/TrEMBL
  RFX1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6PGH8 UniProtKB/Swiss-Prot