Krcc1 (lysine-rich coiled-coil 1) - Rat Genome Database
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Gene: Krcc1 (lysine-rich coiled-coil 1) Mus musculus
Analyze
Symbol: Krcc1
Name: lysine-rich coiled-coil 1
RGD ID: 1315144
MGI Page MGI
Description: Orthologous to human KRCC1 (lysine rich coiled-coil 1); INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA792894; lysine-rich coiled-coil protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,248,661 - 71,263,809 (+)NCBIGRCm39mm39
GRCm39 Ensembl671,248,661 - 71,262,303 (+)Ensembl
GRCm38671,271,677 - 71,286,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,271,677 - 71,285,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,222,013 - 71,235,313 (+)NCBIGRCm37mm9NCBIm37
MGSCv36671,201,596 - 71,214,896 (+)NCBImm8
Celera673,360,968 - 73,364,136 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750  


Genomics

Comparative Map Data
Krcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,248,661 - 71,263,809 (+)NCBIGRCm39mm39
GRCm39 Ensembl671,248,661 - 71,262,303 (+)Ensembl
GRCm38671,271,677 - 71,286,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,271,677 - 71,285,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,222,013 - 71,235,313 (+)NCBIGRCm37mm9NCBIm37
MGSCv36671,201,596 - 71,214,896 (+)NCBImm8
Celera673,360,968 - 73,364,136 (+)NCBICelera
Cytogenetic Map6C1NCBI
KRCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl288,027,205 - 88,064,252 (-)EnsemblGRCh38hg38GRCh38
GRCh38288,027,205 - 88,055,783 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37288,326,724 - 88,355,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,107,839 - 88,136,363 (-)NCBINCBI36hg18NCBI36
Celera288,430,632 - 88,459,116 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef287,248,969 - 87,277,482 (-)NCBIHuRef
CHM1_1288,255,934 - 88,284,464 (-)NCBICHM1_1
Krcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24103,261,566 - 103,274,672 (+)NCBI
Rnor_6.0 Ensembl499,133,842 - 99,146,827 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0499,133,735 - 99,148,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04163,912,805 - 163,927,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,483,865 - 104,496,846 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14104,728,345 - 104,741,327 (+)NCBI
Celera492,437,598 - 92,450,576 (+)NCBICelera
Cytogenetic Map4q31NCBI
Krcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955424812,242 - 825,122 (+)NCBIChiLan1.0ChiLan1.0
KRCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A89,069,217 - 89,097,913 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A87,160,679 - 87,189,898 (-)NCBIMhudiblu_PPA_v0panPan3
KRCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,306,765 - 38,322,782 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Krcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936712783,696 - 803,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,928,260 - 57,946,654 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,928,263 - 57,946,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,536,325 - 60,554,513 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRCC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,732,463 - 18,763,193 (+)NCBI
ChlSab1.1 Ensembl1418,761,835 - 18,762,614 (+)Ensembl
Krcc1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474916,443,388 - 16,455,952 (+)NCBI

Position Markers
AA792894  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38671,284,996 - 71,285,079UniSTSGRCm38
MGSCv37671,234,990 - 71,235,073UniSTSGRCm37
Celera673,363,813 - 73,363,896UniSTS
Cytogenetic Map6C1UniSTS
Whitehead/MRC_RH6698.14UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64089129671379171Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:84
Interacting mature miRNAs:84
Transcripts:ENSMUST00000080949, ENSMUST00000168700
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000080949   ⟹   ENSMUSP00000079748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,282,280 - 71,285,318 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168700   ⟹   ENSMUSP00000130252
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,272,019 - 71,285,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204436   ⟹   ENSMUSP00000145416
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,271,677 - 71,285,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205123   ⟹   ENSMUSP00000145024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl671,271,701 - 71,284,240 (+)Ensembl
RefSeq Acc Id: NM_001354706   ⟹   NP_001341635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,248,661 - 71,263,809 (+)NCBI
GRCm38671,271,677 - 71,286,825 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145568   ⟹   NP_663543
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39671,249,003 - 71,263,809 (+)NCBI
GRCm38671,272,019 - 71,286,825 (+)NCBI
MGSCv37671,222,013 - 71,235,313 (+)RGD
Celera673,360,968 - 73,364,136 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_663543   ⟸   NM_145568
- UniProtKB: Q99JT5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001341635   ⟸   NM_001354706
RefSeq Acc Id: ENSMUSP00000145024   ⟸   ENSMUST00000205123
RefSeq Acc Id: ENSMUSP00000145416   ⟸   ENSMUST00000204436
RefSeq Acc Id: ENSMUSP00000130252   ⟸   ENSMUST00000168700
RefSeq Acc Id: ENSMUSP00000079748   ⟸   ENSMUST00000080949

Promoters
RGD ID:6839547
Promoter ID:MM_KWN:46414
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_145568,   UC009CGM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36671,220,721 - 71,222,092 (+)MPROMDB
RGD ID:6889956
Promoter ID:EPDNEW_M8429
Type:initiation region
Name:Krcc1_1
Description:Mus musculus lysine-rich coiled-coil 1 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38671,271,698 - 71,271,758EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889377 AgrOrtholog
Ensembl Genes ENSMUSG00000053012 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000079748 UniProtKB/Swiss-Prot
  ENSMUSP00000130252 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145024 UniProtKB/TrEMBL
  ENSMUSP00000145416 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000080949 UniProtKB/Swiss-Prot
  ENSMUST00000168700 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204436 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000205123 UniProtKB/TrEMBL
KEGG Report mmu:57896 UniProtKB/Swiss-Prot
MGD MGI:1889377 ENTREZGENE
NCBI Gene 57896 ENTREZGENE
PhenoGen Krcc1 PhenoGen
UniProt A0A0N4SVB0_MOUSE UniProtKB/TrEMBL
  KRCC1_MOUSE UniProtKB/Swiss-Prot
  Q3UG67_MOUSE UniProtKB/TrEMBL
  Q8BWL9_MOUSE UniProtKB/TrEMBL
  Q99JT5 ENTREZGENE