Cct7 (chaperonin containing Tcp1, subunit 7 (eta))

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Gene: Cct7 (chaperonin containing Tcp1, subunit 7 (eta)) Mus musculus

Analyze

Symbol:

Cct7

Name:

chaperonin containing Tcp1, subunit 7 (eta)

RGD ID:

1315028

MGI Page

MGI

Description:

Orthologous to human CCT7 (chaperonin containing TCP1 subunit 7); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

AA408524; AL022769; CCT-eta; Ccth; Cctz; chaperonin containing t-complex subunit eta; chaperonin subunit 7 (eta); T-complex protein 1 subunit eta; TCP-1-eta

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCT7 (chaperonin containing TCP1 subunit 7)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cct7 (chaperonin containing TCP1 subunit 7)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cct7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCT7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC100856782 (T-complex protein 1 subunit eta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cct7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCT7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CCT7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cct7 (chaperonin containing TCP1 subunit 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cct7 (chaperonin containing TCP1 subunit 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CCT7 (chaperonin containing TCP1 subunit 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	cct7 (chaperonin containing TCP1, subunit 7 (eta))	Alliance	DIOPT (PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CCT7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	CCT7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	cct-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)

Related Pseudogenes:

Gm12180 Gm19260 Gm20587 Gm20952 Gm3131 Gm5234 Gm5380

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,428,487 - 85,445,459 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	85,428,496 - 85,445,457 (+)	Ensembl
GRCm38	6	85,451,505 - 85,468,477 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,451,514 - 85,468,475 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,401,499 - 85,418,471 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	85,417,731 - 85,434,130 (+)	NCBI			mm8
Celera	6	87,423,447 - 87,440,419 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute kidney failure (ISO)

acute kidney tubular necrosis (ISO)

Disease Progression (ISO)

human immunodeficiency virus infectious disease (ISO)

myocardial infarction (ISO)

Stomach Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (EXP,ISO)

1,2-dimethylhydrazine (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP)

1H-pyrazole (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (ISO)

2,6-dinitrotoluene (ISO)

2-methylcholine (ISO)

3',5'-cyclic GMP (ISO)

3H-1,2-dithiole-3-thione (EXP)

aflatoxin B1 (ISO)

aminoglutethimide (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (ISO)

C60 fullerene (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

choline (EXP)

chromium(6+) (EXP)

clobetasol (EXP)

cyclophosphamide (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dinophysistoxin 1 (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (ISO)

folic acid (EXP)

gentamycin (ISO)

hydralazine (ISO)

L-methionine (EXP)

nefazodone (ISO)

nickel dichloride (ISO)

nimesulide (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

phenobarbital (EXP)

PhIP (ISO)

phlorizin (EXP)

pirinixic acid (EXP)

S-nitrosoglutathione (ISO)

sodium arsenate (EXP)

sodium dichromate (EXP,ISO)

tamoxifen (EXP,ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

tolcapone (ISO)

tributylstannane (ISO)

trimellitic anhydride (EXP)

valdecoxib (ISO)

valproic acid (ISO)

vinclozolin (ISO)

WIN 55212-2 (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

binding of sperm to zona pellucida (IDA)

positive regulation of establishment of protein localization to telomere (ISO)

positive regulation of protein localization to Cajal body (ISO)

positive regulation of telomerase RNA localization to Cajal body (ISO)

positive regulation of telomere maintenance via telomerase (ISO)

protein folding (IBA,ISO)

protein stabilization (ISO)

toxin transport (IMP)

Cellular Component

cell body (IDA)

chaperonin-containing T-complex (IBA,IDA,ISO)

cytoplasm (IEA)

microtubule (ISO)

mitochondrion (HDA)

zona pellucida receptor complex (IDA)

Molecular Function

ATP binding (IEA)

identical protein binding (IPI)

nucleotide binding (IEA)

protein binding (IPI,ISO)

protein folding chaperone (ISO)

unfolded protein binding (IBA)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Kubota H, etal., Curr Biol 1994 Feb 1;4(2):89-99.
3.	Kubota H, etal., Eur J Biochem 1995 May 15;230(1):3-16.
4.	Kubota H, etal., Eur J Biochem 1999 Jun;262(2):492-500.
5.	MGD data from the GO Consortium
6.	O'Bryan JP, etal., Mol Cell Biol 1991 Oct;11(10):5016-31.
7.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7671812	PMID:7828721	PMID:9250675	PMID:9918813	PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11532003	PMID:11591653	PMID:12477932
PMID:12520002	PMID:12904583	PMID:14610273	PMID:15347653	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073	PMID:18307411	PMID:18614015	PMID:18799693	PMID:20360068
PMID:21267068	PMID:21677750	PMID:21873635	PMID:21880732	PMID:22083510	PMID:22673621	PMID:23665500	PMID:23716698	PMID:24457600	PMID:25755282	PMID:25921334	PMID:26496610
PMID:28378742	PMID:30196744	PMID:30333137	PMID:30457570	PMID:30562941	PMID:30713523	PMID:31040226	PMID:32325033

Genomics

Comparative Map Data

Cct7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,428,487 - 85,445,459 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	85,428,496 - 85,445,457 (+)	Ensembl
GRCm38	6	85,451,505 - 85,468,477 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,451,514 - 85,468,475 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,401,499 - 85,418,471 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	85,417,731 - 85,434,130 (+)	NCBI			mm8
Celera	6	87,423,447 - 87,440,419 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

CCT7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	73,233,420 - 73,253,021 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	73,233,425 - 73,253,008 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	73,461,436 - 73,480,133 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,314,913 - 73,333,655 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	73,373,059 - 73,391,799	NCBI
Celera	2	73,312,190 - 73,330,978 (+)	NCBI
Cytogenetic Map	2	p13.2	NCBI
HuRef	2	73,197,020 - 73,215,809 (+)	NCBI		HuRef
CHM1_1	2	73,392,171 - 73,410,957 (+)	NCBI		CHM1_1

Cct7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	117,989,232 - 118,006,478 (+)	NCBI
Rnor_6.0 Ensembl	4	117,235,023 - 117,252,265 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	117,235,023 - 117,252,265 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	181,812,638 - 181,829,880 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	119,706,130 - 119,722,975 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	119,950,230 - 119,967,453 (+)	NCBI
Celera	4	106,971,267 - 106,988,502 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Cct7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955424	12,379,222 - 12,402,161 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCT7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	74,775,781 - 74,794,515 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	74,775,781 - 74,794,515 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	73,287,026 - 73,305,792 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LOC100856782
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	37,026,053 - 37,027,839 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cct7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936491	17,017,687 - 17,033,526 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCT7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,526,534 - 69,546,548 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	69,527,238 - 69,540,489 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,730,662 - 72,743,914 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCT7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	33,921,100 - 33,940,204 (-)	NCBI
ChlSab1.1 Ensembl	14	33,921,247 - 33,939,404 (-)	Ensembl

Cct7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624762	387,712 - 410,196 (-)	NCBI

Position Markers

RH124723

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,468,263 - 85,468,344	UniSTS	GRCm38
MGSCv37	6	85,418,257 - 85,418,338	UniSTS	GRCm37
Celera	6	87,440,205 - 87,440,286	UniSTS
Cytogenetic Map	6	D1	UniSTS

RH125529

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,467,087 - 85,467,642	UniSTS	GRCm38
MGSCv37	6	85,417,081 - 85,417,636	UniSTS	GRCm37
Celera	6	87,439,029 - 87,439,584	UniSTS
Cytogenetic Map	6	D1	UniSTS

UniSTS:235479

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,455,666 - 85,455,748	UniSTS	GRCm38
MGSCv37	6	85,405,660 - 85,405,742	UniSTS	GRCm37
Celera	6	87,427,608 - 87,427,690	UniSTS
Cytogenetic Map	6	D1	UniSTS

UniSTS:235482

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,467,743 - 85,468,216	UniSTS	GRCm38
MGSCv37	6	85,417,737 - 85,418,210	UniSTS	GRCm37
Celera	6	87,439,685 - 87,440,158	UniSTS
Cytogenetic Map	6	D1	UniSTS

CCT7

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	85,466,011 - 85,466,651	UniSTS	GRCm38
MGSCv37	6	85,416,005 - 85,416,645	UniSTS	GRCm37
Celera	6	87,437,953 - 87,438,593	UniSTS
Cytogenetic Map	6	D1	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	103
Count of miRNA genes:	101
Interacting mature miRNAs:	102
Transcripts:	ENSMUST00000032078
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_007638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB022160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC155728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK146902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK184902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK196078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK219370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC008255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ951185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR354750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z31399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000032078 ⟹ ENSMUSP00000032078

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,451,514 - 85,468,475 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204489 ⟹ ENSMUSP00000144919

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,452,052 - 85,468,282 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204592 ⟹ ENSMUSP00000144893

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,452,092 - 85,468,282 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204612 ⟹ ENSMUSP00000144701

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,462,152 - 85,466,088 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000205094

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,452,019 - 85,455,902 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000205096

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,460,738 - 85,464,910 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000205143

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	85,461,771 - 85,465,937 (+)	Ensembl

RefSeq Acc Id:

NM_007638 ⟹ NP_031664

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	85,428,487 - 85,445,459 (+)	NCBI
GRCm38	6	85,451,505 - 85,468,477 (+)	ENTREZGENE
MGSCv37	6	85,401,499 - 85,418,471 (+)	RGD
Celera	6	87,423,447 - 87,440,419 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GCGGGGTTGCGCGGGATCCACGGCTCTCCTCCCCAGGCAGAGACGGGCCTCGCGCGAAGGGGCA
GGCGGCACGGCGCCGCCTCGGCCGATAAGGGGCGCTACAGAGCTAGAAGCCGACCCGAGCAAAT
TTCCTGCGCCCGAGCGGGCCGCGCACCTGTGACCCGGGACACTGTTCCCAACTTCCCAAGCTAC
CTGTGAAACTCACGGAGCTCCCTCGCCACGGAGCTGAGCAGGTGCAGTGAGATCACTCACCTAA
GGTGCTTCTCCTAGCCGGTGTTCAGTACTGATAGCTCATTGCACGTCTACCATGGCGTCTGGGA
GCGCGGGCTGAGGCGGGACCTTACCGCACCTTACAAACCAAAAGCACTGCGAGACTCGATGACC
CCCGCCAAAGCTAACGCGAGTTCCTAGAGCGTCCCTGGACCTCCGACTCCTCTAGCCGGCTACC
TCGGGAGCTAACCATAGAGTGGCGGAAGTGGTCCGGCCCCTTCCTCTCCCGGGCTAACGTCTCG
CCAGAAGCTTCTGGGCATTTCTCCGGCGCGGAGCATTGTGGGCTTGGGTGGGCGGCCCCGAGGC
GGACAACTGACGAGTTGCGGGTACCTGAAGCCGCTTCCAAGATGATGCCCACACCAGTTATCCT
GTTGAAAGAGGGTACTGATAGCTCCCAGGGCATCCCTCAGCTCGTGAGTAACATCAGTGCCTGC
CAAGTGATTGCTGAGGCTGTAAGAACCACCCTGGGTCCCCGTGGCATGGACAAACTTATTGTGG
ATGGCCGAGGCAAAGCAACAATATCTAATGATGGGGCCACAATTCTGAAACTCCTCGATGTTGT
CCATCCTGCAGCAAAGACTTTAGTGGACATAGCCAAGTCCCAGGATGCTGAGGTTGGTGATGGC
ACCACCTCAGTGACCCTGCTGGCTGCGGAGTTTCTGAAGCAGGTGAAGCCCTACGTGGAAGAAG
GTTTACACCCTCAGATCATCATCCGAGCTTTCCGCACAGCCACCCAATTGGCTGTTAACAAAAT
CAAAGAGATAGCTGTGACTGTGAAGAAGCAAGATAAAGTAGAGCAGAGGAAGATGCTGGAGAAG
TGTGCGATGACAGCCCTGAGCTCCAAGCTGATCTCCCAGCAGAAGGTCTTCTTCGCCAAGATGG
TGGTTGATGCCGTGATGATGCTTGACGAGCTGCTGCAGCTTAAAATGATTGGCATCAAGAAGGT
GCAGGGGGGAGCCCTGGAGGAGTCTCAGCTAGTTGCTGGTGTTGCGTTCAAGAAGACTTTCTCT
TATGCTGGGTTTGAAATGCAGCCCAAGAAGTATAAGAACCCCAAGATTGCCCTCTTAAATGTTG
AGCTTGAGCTGAAAGCAGAGAAAGATAATGCTGAAATCAGAGTCCACACAGTGGAGGATTACCA
GGCAATTGTTGATGCCGAGTGGAATATTCTCTATGACAAGTTAGAGAAGATCCATCAGTCTGGA
GCCAAAGTCATCTTGTCTAAACTCCCTATTGGGGATGTGGCCACCCAGTACTTTGCTGATAGGG
ACATGTTCTGTGCTGGCCGAGTGCCTGAGGAGGATCTGAAGAGGACGATGATGGCTTGTGGAGG
CTCAATCCAGACCAGTGTGAATGCTCTGGTTCCAGATGTGCTGGGCCACTGCCAAGTGTTTGAA
GAGACCCAAATTGGAGGAGAGAGGTACAATTTCTTCACTGGCTGCCCTAAGGCCAAGACATGTA
CCATCATCCTCCGTGGTGGCGCTGAGCAGTTTATGGAAGAGACAGAGAGGTCCCTACATGATGC
CATCATGATTGTGAGGAGGGCCATCAAGAATGACTCTGTGGTGGCTGGTGGTGGAGCCATCGAG
ATGGAACTTTCCAAATACCTGCGGGATTACTCGAGGACCATTCCTGGGAAGCAGCAGCTGTTGA
TTGGGGCATATGCCAAGGCCCTGGAGATTATTCCACGACAGCTATGTGACAACGCTGGCTTTGA
TGCCACAAACATCCTCAACAAGCTGCGGGCTCGACACGCACAGGGAGGTATGTGGTATGGGGTG
GACATCAACAATGAGAACATCGCCGACAACTTCCAGGCATTTGTGTGGGAGCCAGCCATGGTGC
GCATCAACGCTCTGACAGCAGCTTCTGAGGCTGCATGCCTTATTGTGTCCGTGGATGAGACTAT
CAAGAACCCCCGCTCCACTGTGGATCCTCCAGCTCCATCAGCTGGCCGTGGCAGAGGCCAAGCC
CGCTTCCACTGAGAGGCGAGGCGGTCTGCACCTCCTTGTGAGGTGAGGGGGTGGATGAGAAGAT
GGTTGCTGGTCTGCTGGGTTCTCACTGAGGTTATTTAAATAAAGCTTAAGGTTATTTGCTTGGT
GTGTTTTTCATAAACATTTTCCTGCCTTAGAATTGGAGTCATGTATACTTGGAAATAGAAGTAA
AGAATTGTGTTAGCCTGCTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_031664	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH08255	(Get FASTA)	NCBI Sequence Viewer
	BAA81878	(Get FASTA)	NCBI Sequence Viewer
	BAC37005	(Get FASTA)	NCBI Sequence Viewer
	BAE27516	(Get FASTA)	NCBI Sequence Viewer
	BAE29350	(Get FASTA)	NCBI Sequence Viewer
	BAE39094	(Get FASTA)	NCBI Sequence Viewer
	BAE39463	(Get FASTA)	NCBI Sequence Viewer
	BAE39849	(Get FASTA)	NCBI Sequence Viewer
	BAE39942	(Get FASTA)	NCBI Sequence Viewer
	BAE40060	(Get FASTA)	NCBI Sequence Viewer
	BAE40218	(Get FASTA)	NCBI Sequence Viewer
	BAE41168	(Get FASTA)	NCBI Sequence Viewer
	CAA83274	(Get FASTA)	NCBI Sequence Viewer
	EDK99132	(Get FASTA)	NCBI Sequence Viewer
	EDK99133	(Get FASTA)	NCBI Sequence Viewer
	EDK99134	(Get FASTA)	NCBI Sequence Viewer
	EDK99135	(Get FASTA)	NCBI Sequence Viewer
	P80313	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_031664 ⟸ NM_007638

- UniProtKB:

P80313 (UniProtKB/Swiss-Prot), Q3TIJ7 (UniProtKB/TrEMBL), Q3UDB1 (UniProtKB/TrEMBL), Q3UIJ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT
ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA
TQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMMLDELLQL
KMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIR
VHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLK
RTMMACGGSIQTSVNALVPDVLGHCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEE
TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQ
LCDNAGFDATNILNKLRARHAQGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACL
IVSVDETIKNPRSTVDPPAPSAGRGRGQARFH

hide sequence

RefSeq Acc Id:

ENSMUSP00000032078 ⟸ ENSMUST00000032078

RefSeq Acc Id:

ENSMUSP00000144893 ⟸ ENSMUST00000204592

RefSeq Acc Id:

ENSMUSP00000144701 ⟸ ENSMUST00000204612

RefSeq Acc Id:

ENSMUSP00000144919 ⟸ ENSMUST00000204489

Promoters

RGD ID:

6838901

Promoter ID:

MM_KWN:46685

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, Spleen

Transcripts:

NM_007638, UC009CPU.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	85,401,516 - 85,402,082 (+)	MPROMDB

RGD ID:

6890228

Promoter ID:

EPDNEW_M8565

Type:

multiple initiation site

Name:

Cct7_2

Description:

Mus musculus chaperonin containing Tcp1, subunit 7 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8567

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	85,451,496 - 85,451,556	EPDNEW

RGD ID:

6890232

Promoter ID:

EPDNEW_M8567

Type:

initiation region

Name:

Cct7_1

Description:

Mus musculus chaperonin containing Tcp1, subunit 7 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8565

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	85,452,019 - 85,452,079	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:107184	AgrOrtholog
Ensembl Genes	ENSMUSG00000030007	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000032078	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000144701	UniProtKB/TrEMBL
	ENSMUSP00000144893	UniProtKB/TrEMBL
	ENSMUSP00000144919	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000032078	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000204489	UniProtKB/TrEMBL
	ENSMUST00000204592	UniProtKB/TrEMBL
	ENSMUST00000204612	UniProtKB/TrEMBL
Gene3D-CATH	1.10.560.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.260.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.50.7.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Chap_CCT_eta	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Chaperone_TCP-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Chaperonin_TCP-1_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cpn60/TCP-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GroEL-like_apical_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GROEL-like_equatorial_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TCP-1-like_intermed_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:12468	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:107184	ENTREZGENE
NCBI Gene	12468	ENTREZGENE
PANTHER	PTHR11353:SF22	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Cpn60_TCP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cct7	PhenoGen
PRINTS	TCOMPLEXTCP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	TCP1_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TCP1_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TCP1_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48592	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF52029	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54849	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	chap_CCT_eta	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0N4SUI8_MOUSE	UniProtKB/TrEMBL
	A0A0N4SV00_MOUSE	UniProtKB/TrEMBL
	A0A0N4SV22_MOUSE	UniProtKB/TrEMBL
	P80313	ENTREZGENE
	Q3TET0_MOUSE	UniProtKB/TrEMBL
	Q3THH8_MOUSE	UniProtKB/TrEMBL
	Q3TIJ7	ENTREZGENE, UniProtKB/TrEMBL
	Q3TJN2_MOUSE	UniProtKB/TrEMBL
	Q3UDB1	ENTREZGENE, UniProtKB/TrEMBL
	Q3UIJ0	ENTREZGENE, UniProtKB/TrEMBL
	Q8C5Q5_MOUSE	UniProtKB/TrEMBL
	TCPH_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD