Kcmf1 (potassium channel modulatory factor 1) - Rat Genome Database
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Gene: Kcmf1 (potassium channel modulatory factor 1) Mus musculus
Analyze
Symbol: Kcmf1
Name: potassium channel modulatory factor 1
RGD ID: 1315005
MGI Page MGI
Description: Is expressed in several structures, including early conceptus; gonad; heart; liver; and metanephros. Orthologous to human KCMF1 (potassium channel modulatory factor 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700094M07Rik; clone DEBT-91; debt-91; Debt91; differentially expressed in branching tubulogenesis 91; E3 ubiquitin-protein ligase KCMF1; Pmc; Pmcf; potassium channel modulatory factor DEBT-91; RING-type E3 ubiquitin transferase KCMF1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18785  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,818,097 - 72,876,962 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,818,097 - 72,876,962 (-)Ensembl
GRCm38672,841,114 - 72,899,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,841,114 - 72,899,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,791,108 - 72,849,973 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,770,623 - 72,791,436 (-)NCBImm8
Celera674,945,943 - 74,966,908 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
plasma membrane  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12810064   PMID:12904583   PMID:14610273   PMID:15618518  
PMID:15741177   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18603407   PMID:18799693   PMID:20412781   PMID:20473331   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:27325702  


Genomics

Comparative Map Data
Kcmf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,818,097 - 72,876,962 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,818,097 - 72,876,962 (-)Ensembl
GRCm38672,841,114 - 72,899,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,841,114 - 72,899,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,791,108 - 72,849,973 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,770,623 - 72,791,436 (-)NCBImm8
Celera674,945,943 - 74,966,908 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.3NCBI
KCMF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl284,971,093 - 85,059,472 (+)EnsemblGRCh38hg38GRCh38
GRCh38284,971,161 - 85,059,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,198,284 - 85,286,595 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,051,742 - 85,140,106 (+)NCBINCBI36hg18NCBI36
Build 34285,109,904 - 85,193,106NCBI
Celera285,082,587 - 85,114,172 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,151,778 - 85,183,365 (+)NCBIHuRef
CHM1_1285,128,041 - 85,216,367 (+)NCBICHM1_1
Kcmf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,888,452 - 104,950,234 (-)NCBI
Rnor_6.0 Ensembl4100,759,526 - 100,783,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04100,759,526 - 100,783,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04165,526,163 - 165,549,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44106,052,088 - 106,062,028 (-)NCBIRGSC3.4rn4RGSC3.4
Celera494,042,418 - 94,065,734 (-)NCBICelera
Cytogenetic Map4q31NCBI
Kcmf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,348,170 - 2,386,038 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,348,170 - 2,412,488 (-)NCBIChiLan1.0ChiLan1.0
KCMF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A86,581,222 - 86,662,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,631,673 - 86,662,468 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,026,798 - 85,110,088 (+)NCBIMhudiblu_PPA_v0panPan3
KCMF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1739,920,111 - 39,951,278 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11739,919,102 - 40,000,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kcmf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366503,777,331 - 3,812,952 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCMF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,588,472 - 59,708,462 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,622,001 - 59,708,437 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,620,032 - 62,730,556 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCMF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11620,659,454 - 20,684,521 (-)NCBI
Kcmf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474918,017,862 - 18,098,444 (-)NCBI

Position Markers
BB041536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,883,622 - 72,883,725UniSTSGRCm38
MGSCv37672,833,616 - 72,833,719UniSTSGRCm37
Celera674,988,589 - 74,988,692UniSTS
Cytogenetic Map6C3UniSTS
cM Map630.5UniSTS
Whitehead/MRC_RH6732.3UniSTS
Kcmf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,882,401 - 72,882,629UniSTSGRCm38
Celera674,987,368 - 74,987,596UniSTS
Cytogenetic Map6C3UniSTS
cM Map632.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:459
Count of miRNA genes:346
Interacting mature miRNAs:385
Transcripts:ENSMUST00000068697
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000068697   ⟹   ENSMUSP00000064410
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,841,114 - 72,899,979 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203004
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,846,370 - 72,849,413 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,848,236 - 72,858,894 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204598   ⟹   ENSMUSP00000144910
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,842,569 - 72,899,292 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204708   ⟹   ENSMUSP00000144907
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,849,444 - 72,899,083 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206378   ⟹   ENSMUSP00000145559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,842,985 - 72,899,703 (-)Ensembl
RefSeq Acc Id: NM_001347231   ⟹   NP_001334160
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,818,097 - 72,876,275 (-)NCBI
GRCm38672,841,114 - 72,899,292 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019715   ⟹   NP_062689
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,818,097 - 72,876,962 (-)NCBI
GRCm38672,841,114 - 72,899,979 (-)ENTREZGENE
MGSCv37672,791,108 - 72,849,973 (-)RGD
Celera674,945,943 - 74,966,908 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001334160 (Get FASTA)   NCBI Sequence Viewer  
  NP_062689 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH43330 (Get FASTA)   NCBI Sequence Viewer  
  BAE25063 (Get FASTA)   NCBI Sequence Viewer  
  EDK98995 (Get FASTA)   NCBI Sequence Viewer  
  Q80UY2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_062689   ⟸   NM_019715
- Peptide Label: isoform 1
- UniProtKB: Q80UY2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001334160   ⟸   NM_001347231
- Peptide Label: isoform 2
- UniProtKB: A0A0N4SV15 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000145559   ⟸   ENSMUST00000206378
RefSeq Acc Id: ENSMUSP00000064410   ⟸   ENSMUST00000068697
RefSeq Acc Id: ENSMUSP00000144910   ⟸   ENSMUST00000204598
RefSeq Acc Id: ENSMUSP00000144907   ⟸   ENSMUST00000204708
Protein Domains
C2H2-type   ZZ-type

Promoters
RGD ID:6839526
Promoter ID:MM_KWN:46485
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_019715,   UC009CJE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,849,561 - 72,850,722 (-)MPROMDB
RGD ID:6890040
Promoter ID:EPDNEW_M8471
Type:multiple initiation site
Name:Kcmf1_1
Description:Mus musculus potassium channel modulatory factor 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8472  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,899,296 - 72,899,356EPDNEW
RGD ID:6890042
Promoter ID:EPDNEW_M8472
Type:initiation region
Name:Kcmf1_2
Description:Mus musculus potassium channel modulatory factor 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8471  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,899,765 - 72,899,825EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921537 AgrOrtholog
Ensembl Genes ENSMUSG00000055239 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000064410 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144907 UniProtKB/TrEMBL
  ENSMUSP00000144910 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000145559 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068697 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204598 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000204708 UniProtKB/TrEMBL
  ENSMUST00000206378 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Di19_Zn_binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KCMF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74287 UniProtKB/Swiss-Prot
MGD MGI:1921537 ENTREZGENE
NCBI Gene 74287 ENTREZGENE
PANTHER PTHR12268:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-Di19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kcmf1 PhenoGen
PROSITE ZF_ZZ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV12_MOUSE UniProtKB/TrEMBL
  A0A0N4SV15 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RNG8_MOUSE UniProtKB/TrEMBL
  KCMF1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9WUM2 UniProtKB/Swiss-Prot