Pus10 (pseudouridylate synthase 10) - Rat Genome Database

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Gene: Pus10 (pseudouridylate synthase 10) Mus musculus
Analyze
Symbol: Pus10
Name: pseudouridylate synthase 10
RGD ID: 1314997
MGI Page MGI
Description: Predicted to enable primary miRNA binding activity and tRNA pseudouridine synthase activity. Predicted to be involved in primary miRNA processing and tRNA pseudouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm and nucleus. Orthologous to human PUS10 (pseudouridine synthase 10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810013G11Rik; 4933435A13Rik; AU014648; C77560; Ccdc139; coiled-coil domain containing 139; coiled-coil domain-containing protein 139; psi55 synthase; putative tRNA pseudouridine synthase Pus10; RP23-164N15.2; tRNA pseudouridine 55 synthase; tRNA pseudouridine synthase Pus10; tRNA pseudouridylate synthase; tRNA-uridine isomerase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,608,588 - 23,682,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,615,674 - 23,682,876 (+)EnsemblGRCm39 Ensembl
GRCm381123,658,591 - 23,732,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,665,674 - 23,732,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,565,674 - 23,632,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,565,674 - 23,632,876 (+)NCBIMGSCv36mm8
Celera1125,787,560 - 25,854,888 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
mitochondrion  (IEA)
nucleus  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16919269   PMID:18799693   PMID:21267068   PMID:21873635   PMID:30973865  


Genomics

Comparative Map Data
Pus10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,608,588 - 23,682,876 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,615,674 - 23,682,876 (+)EnsemblGRCm39 Ensembl
GRCm381123,658,591 - 23,732,876 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,665,674 - 23,732,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,565,674 - 23,632,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,565,674 - 23,632,876 (+)NCBIMGSCv36mm8
Celera1125,787,560 - 25,854,888 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.34NCBI
PUS10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38260,940,223 - 61,018,259 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl260,940,222 - 61,018,259 (-)EnsemblGRCh38hg38GRCh38
GRCh37261,167,358 - 61,245,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,022,608 - 61,098,712 (-)NCBINCBI36Build 36hg18NCBI36
Celera261,011,139 - 61,088,956 (-)NCBICelera
Cytogenetic Map2p16.1-p15NCBI
HuRef260,909,348 - 60,985,862 (-)NCBIHuRef
CHM1_1261,097,935 - 61,175,951 (-)NCBICHM1_1
T2T-CHM13v2.0260,946,057 - 61,025,822 (-)NCBIT2T-CHM13v2.0
Pus10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,822,525 - 101,885,187 (+)NCBIGRCr8
mRatBN7.21497,621,228 - 97,684,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,621,391 - 97,684,046 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,954,312 - 102,016,238 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,198,662 - 103,260,590 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,670,237 - 99,732,162 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,411,941 - 108,479,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,412,152 - 108,479,781 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,247,077 - 105,292,051 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,571,602 - 104,607,741 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,590,812 - 104,626,951 (+)NCBI
Celera1496,597,552 - 96,633,610 (+)NCBICelera
Cytogenetic Map14q22NCBI
Pus10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,832,882 - 22,899,420 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,830,889 - 22,899,420 (+)NCBIChiLan1.0ChiLan1.0
PUS10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,345,976 - 65,437,023 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,363,878 - 65,440,974 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,031,606 - 61,108,770 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,171,933 - 62,252,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,171,933 - 62,252,283 (-)Ensemblpanpan1.1panPan2
PUS10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,033,986 - 61,105,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,035,457 - 61,104,544 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,922,449 - 60,993,878 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,041,023 - 62,112,634 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,041,029 - 62,111,652 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,741,393 - 61,815,498 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,028,612 - 62,100,118 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,321,178 - 62,395,624 (-)NCBIUU_Cfam_GSD_1.0
Pus10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,040,995 - 22,132,068 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,439,224 - 6,530,663 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,439,248 - 6,530,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUS10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,799,208 - 80,858,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,791,244 - 80,863,773 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,883,927 - 84,953,237 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PUS10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,971,516 - 46,050,965 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,973,291 - 46,051,541 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,744,922 - 65,824,688 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pus10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833940,687 - 1,013,090 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833940,954 - 1,015,309 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pus10
2039 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1127
Count of miRNA genes:479
Interacting mature miRNAs:542
Transcripts:ENSMUST00000020520, ENSMUST00000058163, ENSMUST00000109525, ENSMUST00000136365, ENSMUST00000139646, ENSMUST00000142287, ENSMUST00000143117
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse

Markers in Region
UniSTS:236538  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,732,250 - 23,732,461UniSTSGRCm38
MGSCv371123,632,250 - 23,632,461UniSTSGRCm37
Celera1125,854,262 - 25,854,473UniSTS
Cytogenetic Map11A3.3UniSTS
RH126180  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381123,731,369 - 23,731,572UniSTSGRCm38
MGSCv371123,631,369 - 23,631,572UniSTSGRCm37
Celera1125,853,381 - 25,853,584UniSTS
Cytogenetic Map11A3.3UniSTS
Whitehead/MRC_RH11394.97UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL805916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX255874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY241530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX207447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020520   ⟹   ENSMUSP00000020520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,615,697 - 23,681,525 (+)Ensembl
GRCm38.p6 Ensembl1123,665,697 - 23,731,525 (+)Ensembl
RefSeq Acc Id: ENSMUST00000058163   ⟹   ENSMUSP00000050395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,616,007 - 23,682,876 (+)Ensembl
GRCm38.p6 Ensembl1123,666,007 - 23,732,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109525   ⟹   ENSMUSP00000105151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,615,674 - 23,682,876 (+)Ensembl
GRCm38.p6 Ensembl1123,665,674 - 23,732,876 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136365
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,616,188 - 23,623,395 (+)Ensembl
GRCm38.p6 Ensembl1123,666,188 - 23,673,395 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,667,482 - 23,679,071 (+)Ensembl
GRCm38.p6 Ensembl1123,717,482 - 23,729,071 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,668,556 - 23,681,398 (+)Ensembl
GRCm38.p6 Ensembl1123,718,556 - 23,731,398 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143117   ⟹   ENSMUSP00000117934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1123,616,511 - 23,623,281 (+)Ensembl
GRCm38.p6 Ensembl1123,666,511 - 23,673,281 (+)Ensembl
RefSeq Acc Id: NM_001033654   ⟹   NP_001028826
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,615,618 - 23,682,876 (+)NCBI
GRCm381123,665,674 - 23,732,876 (+)NCBI
MGSCv371123,565,674 - 23,632,876 (+)RGD
Celera1125,787,560 - 25,854,888 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001401138   ⟹   NP_001388067
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401139   ⟹   NP_001388068
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,485 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401140   ⟹   NP_001388069
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,485 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401141   ⟹   NP_001388070
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401142   ⟹   NP_001388071
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401143   ⟹   NP_001388072
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401144   ⟹   NP_001388073
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,649,581 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401145   ⟹   NP_001388074
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,649,581 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401146   ⟹   NP_001388075
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,649,581 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401147   ⟹   NP_001388076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401148   ⟹   NP_001388077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,485 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401149   ⟹   NP_001388078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,649,581 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_001401150   ⟹   NP_001388079
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,649,581 - 23,682,876 (+)NCBI
RefSeq Acc Id: NM_028304   ⟹   NP_082580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,215 - 23,682,876 (+)NCBI
GRCm381123,665,992 - 23,732,876 (+)NCBI
MGSCv371123,565,674 - 23,632,876 (+)RGD
Celera1125,787,560 - 25,854,888 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028956   ⟹   NP_083232
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,615,618 - 23,682,876 (+)NCBI
GRCm381123,665,674 - 23,732,876 (+)NCBI
MGSCv371123,565,674 - 23,632,876 (+)RGD
Celera1125,787,560 - 25,854,888 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156455
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,615,992 - 23,682,876 (+)NCBI
GRCm381123,665,992 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514862   ⟹   XP_006514925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,615,659 - 23,682,876 (+)NCBI
GRCm381123,665,659 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514863   ⟹   XP_006514926
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,453 - 23,682,876 (+)NCBI
GRCm381123,666,461 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514864   ⟹   XP_006514927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,226 - 23,682,876 (+)NCBI
GRCm381123,665,962 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514865   ⟹   XP_006514928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,592 - 23,682,876 (+)NCBI
GRCm381123,658,595 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514866   ⟹   XP_006514929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,616,466 - 23,682,876 (+)NCBI
GRCm381123,666,465 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246394   ⟹   XP_030102254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,592 - 23,682,876 (+)NCBI
GRCm381123,658,595 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246400   ⟹   XP_030102260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,590 - 23,660,017 (+)NCBI
GRCm381123,658,594 - 23,710,017 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157049   ⟹   XP_036012942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,632,514 - 23,682,876 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949520
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,590 - 23,682,876 (+)NCBI
GRCm381123,658,593 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949522
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,588 - 23,682,876 (+)NCBI
GRCm381123,658,592 - 23,732,876 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949523
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391123,608,588 - 23,682,876 (+)NCBI
GRCm381123,658,592 - 23,732,876 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028826 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388069 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388070 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388071 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388072 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388073 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388074 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388075 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388076 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388077 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388078 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388079 (Get FASTA)   NCBI Sequence Viewer  
  NP_082580 (Get FASTA)   NCBI Sequence Viewer  
  NP_083232 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514925 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514926 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514927 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514928 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514929 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102254 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102260 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012942 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25555 (Get FASTA)   NCBI Sequence Viewer  
  BAB28439 (Get FASTA)   NCBI Sequence Viewer  
  BAB30576 (Get FASTA)   NCBI Sequence Viewer  
  BAC25908 (Get FASTA)   NCBI Sequence Viewer  
  BAC26650 (Get FASTA)   NCBI Sequence Viewer  
  BAC40426 (Get FASTA)   NCBI Sequence Viewer  
  BAE26208 (Get FASTA)   NCBI Sequence Viewer  
  EDL07893 (Get FASTA)   NCBI Sequence Viewer  
  EDL07894 (Get FASTA)   NCBI Sequence Viewer  
  EDL07895 (Get FASTA)   NCBI Sequence Viewer  
  EDL07896 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000020520
  ENSMUSP00000020520.5
  ENSMUSP00000050395
  ENSMUSP00000050395.5
  ENSMUSP00000105151
  ENSMUSP00000105151.2
  ENSMUSP00000117934.2
GenBank Protein Q9D3U0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083232   ⟸   NM_028956
- Peptide Label: isoform 1
- UniProtKB: Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot),   Q9D3U0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001028826   ⟸   NM_001033654
- Peptide Label: isoform 1
- UniProtKB: Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot),   Q9D3U0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_082580   ⟸   NM_028304
- Peptide Label: isoform 1
- UniProtKB: Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot),   Q9D3U0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514925   ⟸   XM_006514862
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514928   ⟸   XM_006514865
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006514927   ⟸   XM_006514864
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514926   ⟸   XM_006514863
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514929   ⟸   XM_006514866
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030102260   ⟸   XM_030246400
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102254   ⟸   XM_030246394
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000117934   ⟸   ENSMUST00000143117
RefSeq Acc Id: ENSMUSP00000020520   ⟸   ENSMUST00000020520
RefSeq Acc Id: ENSMUSP00000105151   ⟸   ENSMUST00000109525
RefSeq Acc Id: ENSMUSP00000050395   ⟸   ENSMUST00000058163
RefSeq Acc Id: XP_036012942   ⟸   XM_036157049
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001388072   ⟸   NM_001401143
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001388070   ⟸   NM_001401141
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001388071   ⟸   NM_001401142
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001388076   ⟸   NM_001401147
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001388067   ⟸   NM_001401138
- Peptide Label: isoform 1
- UniProtKB: Q9D3U0 (UniProtKB/Swiss-Prot),   Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001388068   ⟸   NM_001401139
- Peptide Label: isoform 1
- UniProtKB: Q9D3U0 (UniProtKB/Swiss-Prot),   Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001388077   ⟸   NM_001401148
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001388069   ⟸   NM_001401140
- Peptide Label: isoform 1
- UniProtKB: Q9D3U0 (UniProtKB/Swiss-Prot),   Q8CDM2 (UniProtKB/Swiss-Prot),   Q8BSZ4 (UniProtKB/Swiss-Prot),   Q3UM90 (UniProtKB/Swiss-Prot),   Q9CSI7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001388075   ⟸   NM_001401146
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001388078   ⟸   NM_001401149
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001388073   ⟸   NM_001401144
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001388074   ⟸   NM_001401145
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001388079   ⟸   NM_001401150
- Peptide Label: isoform 8
Protein Domains
Pus10 N-terminal eukaryotes

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3U0-F1-model_v2 AlphaFold Q9D3U0 1-527 view protein structure

Promoters
RGD ID:6821695
Promoter ID:MM_KWN:6690
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   ES_Cell,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001033654,   NM_028304,   NM_028956,   OTTMUST00000077582,   UC007IFM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361123,565,111 - 23,566,527 (+)MPROMDB
RGD ID:6821680
Promoter ID:MM_KWN:6694
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000077584
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361123,618,186 - 23,618,686 (+)MPROMDB
RGD ID:8674120
Promoter ID:EPDNEW_M15091
Type:initiation region
Name:Pus10_2
Description:Mus musculus pseudouridylate synthase 10 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15093  EPDNEW_M15094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381123,665,585 - 23,665,645EPDNEW
RGD ID:8674124
Promoter ID:EPDNEW_M15093
Type:initiation region
Name:Pus10_3
Description:Mus musculus pseudouridylate synthase 10 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15091  EPDNEW_M15094  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381123,665,978 - 23,666,038EPDNEW
RGD ID:8674126
Promoter ID:EPDNEW_M15094
Type:initiation region
Name:Pus10_1
Description:Mus musculus pseudouridylate synthase 10 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15091  EPDNEW_M15093  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381123,666,215 - 23,666,275EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921717 AgrOrtholog
Ensembl Genes ENSMUSG00000020280 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020520 ENTREZGENE
  ENSMUST00000020520.11 UniProtKB/Swiss-Prot
  ENSMUST00000058163 ENTREZGENE
  ENSMUST00000058163.11 UniProtKB/Swiss-Prot
  ENSMUST00000109525 ENTREZGENE
  ENSMUST00000109525.8 UniProtKB/Swiss-Prot
  ENSMUST00000143117.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.2510 UniProtKB/Swiss-Prot
  3.30.70.3190 UniProtKB/Swiss-Prot
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/Swiss-Prot
  Pus10-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pus10-like_C UniProtKB/Swiss-Prot
  Pus10_N_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74467 UniProtKB/Swiss-Prot
MGD MGI:1921717 ENTREZGENE
NCBI Gene 74467 ENTREZGENE
PANTHER PTHR21568 UniProtKB/Swiss-Prot
  TRNA PSEUDOURIDINE SYNTHASE PUS10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Pus10_C UniProtKB/Swiss-Prot
  Pus10_N_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pus10 PhenoGen
Superfamily-SCOP SSF55120 UniProtKB/Swiss-Prot
UniProt B0QZU5_MOUSE UniProtKB/TrEMBL
  PUS10_MOUSE UniProtKB/Swiss-Prot
  Q3UM90 ENTREZGENE
  Q8BSZ4 ENTREZGENE
  Q8CDM2 ENTREZGENE
  Q9CSI7 ENTREZGENE
  Q9D3U0 ENTREZGENE
UniProt Secondary Q3UM90 UniProtKB/Swiss-Prot
  Q8BSZ4 UniProtKB/Swiss-Prot
  Q8CDM2 UniProtKB/Swiss-Prot
  Q9CSI7 UniProtKB/Swiss-Prot