Cnot8 (CCR4-NOT transcription complex, subunit 8) - Rat Genome Database

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Gene: Cnot8 (CCR4-NOT transcription complex, subunit 8) Mus musculus
Analyze
Symbol: Cnot8
Name: CCR4-NOT transcription complex, subunit 8
RGD ID: 1314996
MGI Page MGI
Description: Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in exonucleolytic catabolism of deadenylated mRNA and positive regulation of cell population proliferation. Predicted to act upstream of or within regulation of translation and regulatory ncRNA-mediated gene silencing. Predicted to be located in nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in several structures, including alimentary system; brain; genitourinary system; heart; and hemolymphoid system gland. Orthologous to human CNOT8 (CCR4-NOT transcription complex subunit 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1500015I04Rik; 1810022F04Rik; AA536816; AU015770; AU043059; CCR4-associated factor 8; CCR4-NOT transcription complex subunit 8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18860  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,983,620 - 58,009,423 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,994,979 - 58,009,420 (+)EnsemblGRCm39 Ensembl
GRCm381158,092,794 - 58,118,597 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,104,153 - 58,118,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,917,655 - 57,932,096 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,920,348 - 57,934,789 (+)NCBIMGSCv36mm8
Celera1162,859,300 - 62,873,703 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20211142   PMID:21267068   PMID:21677750   PMID:21741365   PMID:21873635   PMID:23341629   PMID:25737280  
PMID:27065194   PMID:27605379   PMID:30733279   PMID:31366290   PMID:31924127   PMID:35248544   PMID:35390160   PMID:37767629  


Genomics

Comparative Map Data
Cnot8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,983,620 - 58,009,423 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,994,979 - 58,009,420 (+)EnsemblGRCm39 Ensembl
GRCm381158,092,794 - 58,118,597 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,104,153 - 58,118,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,917,655 - 57,932,096 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,920,348 - 57,934,789 (+)NCBIMGSCv36mm8
Celera1162,859,300 - 62,873,703 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.69NCBI
CNOT8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,858,249 - 154,876,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,857,553 - 154,876,792 (+)EnsemblGRCh38hg38GRCh38
GRCh375154,237,809 - 154,256,352 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365154,218,391 - 154,236,545 (+)NCBINCBI36Build 36hg18NCBI36
Build 345154,218,390 - 154,236,544NCBI
Celera5150,315,139 - 150,333,293 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5149,380,048 - 149,398,210 (+)NCBIHuRef
CHM1_15153,670,618 - 153,688,772 (+)NCBICHM1_1
T2T-CHM13v2.05155,392,211 - 155,410,754 (+)NCBIT2T-CHM13v2.0
Cnot8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,782,042 - 42,795,207 (+)NCBIGRCr8
mRatBN7.21042,281,614 - 42,294,740 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1042,281,722 - 42,294,730 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,946,953 - 46,959,924 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,437,223 - 46,450,194 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,940,878 - 41,953,849 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,538,150 - 43,551,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,538,160 - 43,551,271 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,332,023 - 43,345,136 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,738,890 - 43,751,851 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,752,512 - 43,765,474 (+)NCBI
Celera1041,571,690 - 41,584,651 (+)NCBICelera
Cytogenetic Map10q22NCBI
Cnot8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554089,112,208 - 9,132,758 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554089,112,208 - 9,132,650 (+)NCBIChiLan1.0ChiLan1.0
CNOT8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24150,062,668 - 150,080,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15148,202,213 - 148,219,638 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05150,262,907 - 150,280,215 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15156,256,448 - 156,274,293 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5156,256,448 - 156,274,293 (+)Ensemblpanpan1.1panPan2
CNOT8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1454,935,476 - 54,956,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl454,938,961 - 54,954,416 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha454,826,911 - 54,847,589 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,369,373 - 55,390,056 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,371,824 - 55,385,274 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,200,501 - 55,221,165 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,297,364 - 55,318,474 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0455,801,578 - 55,822,248 (-)NCBIUU_Cfam_GSD_1.0
Cnot8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,521,884 - 109,538,951 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365157,971,504 - 7,988,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,329,790 - 68,350,260 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,329,785 - 68,352,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,249,702 - 74,271,923 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12357,304,578 - 57,323,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2357,309,771 - 57,323,065 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,339,053 - 20,357,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,432,162 - 34,490,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,378,364 - 34,490,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cnot8
870 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:944
Count of miRNA genes:404
Interacting mature miRNAs:466
Transcripts:ENSMUST00000020822, ENSMUST00000108843, ENSMUST00000133923, ENSMUST00000134896
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
13513917Heal54_mwound healing/ regeneration 54 (mouse)115787291759879610Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse

Markers in Region
AU015770  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,118,202 - 58,118,418UniSTSGRCm38
MGSCv371157,931,704 - 57,931,920UniSTSGRCm37
Celera1162,873,311 - 62,873,527UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11764.51UniSTS
AU043059  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,118,078 - 58,118,155UniSTSGRCm38
MGSCv371157,931,580 - 57,931,657UniSTSGRCm37
Celera1162,873,187 - 62,873,264UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11762.69UniSTS
RH124296  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,113,162 - 58,114,061UniSTSGRCm38
GRCm38871,704,495 - 71,704,658UniSTSGRCm38
MGSCv37874,228,394 - 74,228,557UniSTSGRCm37
MGSCv371157,926,664 - 57,927,563UniSTSGRCm37
Celera874,218,920 - 74,219,083UniSTS
Celera1162,868,275 - 62,869,182UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK007581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW122419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY515608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB843287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY419531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD553562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU695229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020822   ⟹   ENSMUSP00000020822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,994,979 - 58,009,420 (+)Ensembl
GRCm38.p6 Ensembl1158,104,153 - 58,118,594 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108843   ⟹   ENSMUSP00000104471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,995,055 - 58,009,420 (+)Ensembl
GRCm38.p6 Ensembl1158,104,229 - 58,118,594 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,004,853 - 58,008,084 (+)Ensembl
GRCm38.p6 Ensembl1158,114,027 - 58,117,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134896   ⟹   ENSMUSP00000116116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,995,192 - 58,002,195 (+)Ensembl
GRCm38.p6 Ensembl1158,104,366 - 58,111,369 (+)Ensembl
RefSeq Acc Id: NM_001356477   ⟹   NP_001343406
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,995,055 - 58,009,423 (+)NCBI
GRCm381158,104,229 - 58,118,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363084   ⟹   NP_001350013
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,983,620 - 58,009,423 (+)NCBI
GRCm381158,092,794 - 58,118,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363085   ⟹   NP_001350014
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,984,032 - 58,009,423 (+)NCBI
GRCm381158,093,206 - 58,118,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363086   ⟹   NP_001350015
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,995,135 - 58,009,423 (+)NCBI
GRCm381158,104,309 - 58,118,597 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026949   ⟹   NP_081225
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,994,796 - 58,009,423 (+)NCBI
GRCm381158,103,970 - 58,118,597 (+)NCBI
MGSCv371157,917,655 - 57,932,096 (+)RGD
Celera1162,859,300 - 62,873,703 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534102   ⟹   XP_006534165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,984,045 - 58,009,422 (+)NCBI
GRCm381158,093,249 - 58,118,596 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156951   ⟹   XP_036012844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,994,106 - 58,009,422 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081225   ⟸   NM_026949
- UniProtKB: Q3U532 (UniProtKB/Swiss-Prot),   Q9D8X5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534165   ⟸   XM_006534102
- Peptide Label: isoform X1
- UniProtKB: Q3U532 (UniProtKB/Swiss-Prot),   Q9D8X5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001350013   ⟸   NM_001363084
- UniProtKB: Q9D8X5 (UniProtKB/Swiss-Prot),   Q3U532 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001350014   ⟸   NM_001363085
- UniProtKB: Q9D8X5 (UniProtKB/Swiss-Prot),   Q3U532 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001343406   ⟸   NM_001356477
- UniProtKB: Q9D8X5 (UniProtKB/Swiss-Prot),   Q3U532 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001350015   ⟸   NM_001363086
- UniProtKB: Q9D8X5 (UniProtKB/Swiss-Prot),   Q3U532 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000020822   ⟸   ENSMUST00000020822
RefSeq Acc Id: ENSMUSP00000116116   ⟸   ENSMUST00000134896
RefSeq Acc Id: ENSMUSP00000104471   ⟸   ENSMUST00000108843
RefSeq Acc Id: XP_036012844   ⟸   XM_036156951
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D8X5-F1-model_v2 AlphaFold Q9D8X5 1-292 view protein structure

Promoters
RGD ID:6820631
Promoter ID:MM_KWN:7531
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000020822,   ENSMUST00000108843,   OTTMUST00000012709
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361157,917,281 - 57,918,242 (+)MPROMDB
RGD ID:8674736
Promoter ID:EPDNEW_M15399
Type:initiation region
Name:Cnot8_1
Description:Mus musculus CCR4-NOT transcription complex, subunit 8 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381158,104,184 - 58,104,244EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916375 AgrOrtholog
Ensembl Genes ENSMUSG00000020515 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020822 ENTREZGENE
  ENSMUST00000020822.12 UniProtKB/Swiss-Prot
  ENSMUST00000108843 ENTREZGENE
  ENSMUST00000108843.8 UniProtKB/Swiss-Prot
  ENSMUST00000134896.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CNOT7/CNOT8/Pop2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNase_CAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69125 UniProtKB/Swiss-Prot
MGD MGI:1916375 ENTREZGENE
NCBI Gene 69125 ENTREZGENE
PANTHER PTHR10797 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10797:SF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB CNOT8 RGD
PhenoGen Cnot8 PhenoGen
Superfamily-SCOP SSF53098 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AFQ7_MOUSE UniProtKB/TrEMBL
  CNOT8_MOUSE UniProtKB/Swiss-Prot
  Q3U532 ENTREZGENE
  Q9D8X5 ENTREZGENE
UniProt Secondary Q3U532 UniProtKB/Swiss-Prot