Cpsf4l (cleavage and polyadenylation specific factor 4-like) - Rat Genome Database

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Gene: Cpsf4l (cleavage and polyadenylation specific factor 4-like) Mus musculus
Analyze
Symbol: Cpsf4l
Name: cleavage and polyadenylation specific factor 4-like
RGD ID: 1314989
MGI Page MGI
Description: Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is expressed in central nervous system and retina. Orthologous to human CPSF4L (cleavage and polyadenylation specific factor 4 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610010C04Rik; 1500000C01Rik; D11Ertd636; D11Ertd636e; RP23-407I21.8
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911113,588,997 - 113,601,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11113,588,998 - 113,600,843 (-)EnsemblGRCm39 Ensembl
GRCm3811113,698,171 - 113,710,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11113,698,172 - 113,710,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711113,559,485 - 113,571,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611113,514,261 - 113,526,107 (-)NCBIMGSCv36mm8
Celera11125,462,926 - 125,474,769 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:17015433   PMID:17967808   PMID:18799693   PMID:21873635  


Genomics

Comparative Map Data
Cpsf4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911113,588,997 - 113,601,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11113,588,998 - 113,600,843 (-)EnsemblGRCm39 Ensembl
GRCm3811113,698,171 - 113,710,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11113,698,172 - 113,710,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711113,559,485 - 113,571,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611113,514,261 - 113,526,107 (-)NCBIMGSCv36mm8
Celera11125,462,926 - 125,474,769 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.17NCBI
CPSF4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381773,242,101 - 73,263,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1773,248,449 - 73,262,352 (-)EnsemblGRCh38hg38GRCh38
GRCh371771,244,588 - 71,258,019 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361768,761,636 - 68,769,552 (-)NCBINCBI36Build 36hg18NCBI36
Celera1767,827,709 - 67,841,141 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1766,653,754 - 66,667,193 (-)NCBIHuRef
CHM1_11771,308,668 - 71,322,105 (-)NCBICHM1_1
T2T-CHM13v2.01774,130,285 - 74,153,506 (-)NCBIT2T-CHM13v2.0
Cpsf4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81099,241,187 - 99,255,207 (-)NCBIGRCr8
mRatBN7.21098,741,816 - 98,756,069 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1098,743,649 - 98,751,590 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010102,213,892 - 102,227,708 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10102,215,722 - 102,227,554 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.010101,893,265 - 101,906,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410103,327,521 - 103,339,565 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110103,341,890 - 103,353,935 (-)NCBI
Celera1097,348,828 - 97,362,517 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
CPSF4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21989,258,090 - 89,285,785 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11794,085,195 - 94,110,375 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01767,170,897 - 67,192,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11772,632,536 - 72,645,845 (-)NCBIpanpan1.1PanPan1.1panPan2
CPSF4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,924,334 - 6,929,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha97,543,932 - 7,550,993 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.097,595,247 - 7,602,267 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.197,635,657 - 7,642,718 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.097,738,553 - 7,745,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,799,311 - 7,806,372 (+)NCBIUU_Cfam_GSD_1.0
Cpsf4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056027,479,199 - 7,489,426 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655977,469 - 983,241 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655977,413 - 985,067 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPSF4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1127,669,819 - 7,697,532 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2127,951,162 - 7,965,164 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPSF4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11648,358,899 - 48,394,504 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607719,196,035 - 19,215,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Cpsf4l
471 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1092
Count of miRNA genes:434
Interacting mature miRNAs:478
Transcripts:ENSMUST00000018871, ENSMUST00000100248, ENSMUST00000106617, ENSMUST00000151396, ENSMUST00000173655
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse

Markers in Region
D11Ertd636e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811113,698,178 - 113,698,379UniSTSGRCm38
MGSCv3711113,559,492 - 113,559,693UniSTSGRCm37
Celera11125,462,933 - 125,463,134UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK002449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV648079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV655803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV657463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV659633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000018871   ⟹   ENSMUSP00000018871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11113,588,998 - 113,600,843 (-)Ensembl
GRCm38.p6 Ensembl11113,698,172 - 113,710,017 (-)Ensembl
RefSeq Acc Id: ENSMUST00000100248   ⟹   ENSMUSP00000097819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11113,588,998 - 113,600,352 (-)Ensembl
GRCm38.p6 Ensembl11113,698,172 - 113,709,526 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106617   ⟹   ENSMUSP00000102228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11113,588,998 - 113,599,793 (-)Ensembl
GRCm38.p6 Ensembl11113,698,172 - 113,708,967 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11113,593,538 - 113,600,350 (-)Ensembl
GRCm38.p6 Ensembl11113,702,712 - 113,709,524 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173655   ⟹   ENSMUSP00000133451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11113,588,998 - 113,600,346 (-)Ensembl
GRCm38.p6 Ensembl11113,698,172 - 113,709,520 (-)Ensembl
RefSeq Acc Id: NM_001164532   ⟹   NP_001158004
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,352 (-)NCBI
GRCm3811113,698,171 - 113,709,526 (-)NCBI
MGSCv3711113,559,485 - 113,571,331 (-)RGD
Celera11125,462,926 - 125,474,769 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362806   ⟹   NP_001349735
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,352 (-)NCBI
GRCm3811113,698,171 - 113,709,526 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026682   ⟹   NP_080958
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,352 (-)NCBI
GRCm3811113,698,171 - 113,709,526 (-)NCBI
MGSCv3711113,559,485 - 113,571,331 (-)RGD
Celera11125,462,926 - 125,474,769 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029794   ⟹   NP_084070
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,843 (-)NCBI
GRCm3811113,698,171 - 113,710,017 (-)NCBI
MGSCv3711113,559,485 - 113,571,331 (-)RGD
Celera11125,462,926 - 125,474,769 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533701   ⟹   XP_006533764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,156 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533704   ⟹   XP_006533767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533705   ⟹   XP_006533768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533706   ⟹   XP_006533769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533707   ⟹   XP_006533770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533709   ⟹   XP_006533772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,986 (-)NCBI
GRCm3811113,698,171 - 113,710,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533710   ⟹   XP_006533773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,528 (-)NCBI
GRCm3811113,698,171 - 113,709,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314655   ⟹   XP_017170144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314656   ⟹   XP_017170145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314657   ⟹   XP_017170146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,165 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246123   ⟹   XP_030101983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246124   ⟹   XP_030101984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,155 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246125   ⟹   XP_030101985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246127   ⟹   XP_030101987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
GRCm3811113,698,171 - 113,710,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156829   ⟹   XP_036012722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156830   ⟹   XP_036012723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156831   ⟹   XP_036012724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,600,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156832   ⟹   XP_036012725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911113,588,997 - 113,601,125 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001158004 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349735 (Get FASTA)   NCBI Sequence Viewer  
  NP_080958 (Get FASTA)   NCBI Sequence Viewer  
  NP_084070 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533764 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533767 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533768 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533769 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533770 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533772 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533773 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170144 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170145 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170146 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101983 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101984 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101985 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101987 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012722 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012723 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012724 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012725 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04603 (Get FASTA)   NCBI Sequence Viewer  
  AAH16190 (Get FASTA)   NCBI Sequence Viewer  
  BAB23796 (Get FASTA)   NCBI Sequence Viewer  
  BAE36185 (Get FASTA)   NCBI Sequence Viewer  
  BAE43147 (Get FASTA)   NCBI Sequence Viewer  
  EDL34419 (Get FASTA)   NCBI Sequence Viewer  
  EDL34420 (Get FASTA)   NCBI Sequence Viewer  
  EDL34421 (Get FASTA)   NCBI Sequence Viewer  
  EDL34422 (Get FASTA)   NCBI Sequence Viewer  
  EDL34423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000018871
  ENSMUSP00000018871.2
  ENSMUSP00000097819
  ENSMUSP00000097819.5
  ENSMUSP00000102228
  ENSMUSP00000102228.2
  ENSMUSP00000133451
  ENSMUSP00000133451.2
RefSeq Acc Id: NP_080958   ⟸   NM_026682
- Peptide Label: isoform 1
- UniProtKB: G3UWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_084070   ⟸   NM_029794
- Peptide Label: isoform 2
- UniProtKB: Q9DBA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158004   ⟸   NM_001164532
- Peptide Label: isoform 3
- UniProtKB: E9Q2N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533772   ⟸   XM_006533709
- Peptide Label: isoform X12
- UniProtKB: Q9DBA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533768   ⟸   XM_006533705
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006533770   ⟸   XM_006533707
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006533767   ⟸   XM_006533704
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006533769   ⟸   XM_006533706
- Peptide Label: isoform X10
- UniProtKB: G3UWW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533764   ⟸   XM_006533701
- Peptide Label: isoform X4
- UniProtKB: E9Q2N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533773   ⟸   XM_006533710
- Peptide Label: isoform X12
- UniProtKB: Q9DBA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170145   ⟸   XM_017314656
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017170146   ⟸   XM_017314657
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017170144   ⟸   XM_017314655
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030101985   ⟸   XM_030246125
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030101983   ⟸   XM_030246123
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030101984   ⟸   XM_030246124
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030101987   ⟸   XM_030246127
- Peptide Label: isoform X15
RefSeq Acc Id: NP_001349735   ⟸   NM_001362806
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000102228   ⟸   ENSMUST00000106617
RefSeq Acc Id: ENSMUSP00000133451   ⟸   ENSMUST00000173655
RefSeq Acc Id: ENSMUSP00000097819   ⟸   ENSMUST00000100248
RefSeq Acc Id: ENSMUSP00000018871   ⟸   ENSMUST00000018871
RefSeq Acc Id: XP_036012725   ⟸   XM_036156832
- Peptide Label: isoform X14
- UniProtKB: Q91YP9 (UniProtKB/TrEMBL),   A2A6P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012723   ⟸   XM_036156830
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036012722   ⟸   XM_036156829
- Peptide Label: isoform X12
- UniProtKB: Q9DBA5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012724   ⟸   XM_036156831
- Peptide Label: isoform X13
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q2N0-F1-model_v2 AlphaFold E9Q2N0 1-280 view protein structure

Promoters
RGD ID:6820686
Promoter ID:MM_KWN:10457
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver
Transcripts:ENSMUST00000100248,   NM_001164532,   NM_026682_CPSF4L,   OTTMUST00000008469,   UC007MEY.1,   UC007MFA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611113,570,266 - 113,571,967 (-)MPROMDB
RGD ID:8677262
Promoter ID:EPDNEW_M16661
Type:initiation region
Name:Cpsf4l_2
Description:Mus musculus cleavage and polyadenylation specific factor 4-like, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16662  EPDNEW_M16663  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811113,708,958 - 113,709,018EPDNEW
RGD ID:8677264
Promoter ID:EPDNEW_M16662
Type:multiple initiation site
Name:Cpsf4l_1
Description:Mus musculus cleavage and polyadenylation specific factor 4-like, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16661  EPDNEW_M16663  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811113,709,525 - 113,709,585EPDNEW
RGD ID:8677266
Promoter ID:EPDNEW_M16663
Type:initiation region
Name:Cpsf4l_3
Description:Mus musculus cleavage and polyadenylation specific factor 4-like, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16661  EPDNEW_M16662  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811113,710,016 - 113,710,076EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277182 AgrOrtholog
Ensembl Genes ENSMUSG00000018727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018871 ENTREZGENE
  ENSMUST00000018871.8 UniProtKB/TrEMBL
  ENSMUST00000100248 ENTREZGENE
  ENSMUST00000100248.6 UniProtKB/TrEMBL
  ENSMUST00000106617 ENTREZGENE
  ENSMUST00000106617.8 UniProtKB/TrEMBL
  ENSMUST00000173655 ENTREZGENE
  ENSMUST00000173655.8 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro CPSF4/Yth1 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
KEGG Report mmu:52670 UniProtKB/TrEMBL
MGD MGI:1277182 ENTREZGENE
NCBI Gene 52670 ENTREZGENE
PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
  PTHR23102 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
PhenoGen Cpsf4l PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A2A6P9 ENTREZGENE, UniProtKB/TrEMBL
  E9Q2N0 ENTREZGENE, UniProtKB/TrEMBL
  G3UWW6 ENTREZGENE, UniProtKB/TrEMBL
  Q3TTY7_MOUSE UniProtKB/TrEMBL
  Q3V4E0_MOUSE UniProtKB/TrEMBL
  Q91YP9 ENTREZGENE, UniProtKB/TrEMBL
  Q99KK5_MOUSE UniProtKB/TrEMBL
  Q9DBA5 ENTREZGENE, UniProtKB/TrEMBL