NOD2 (nucleotide binding oligomerization domain containing 2) - Rat Genome Database

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Gene: NOD2 (nucleotide binding oligomerization domain containing 2) Homo sapiens
Analyze
Symbol: NOD2
Name: nucleotide binding oligomerization domain containing 2
RGD ID: 1314945
HGNC Page HGNC
Description: Enables several functions, including CARD domain binding activity; heat shock protein binding activity; and muramyl dipeptide binding activity. Involved in several processes, including positive regulation of cytokine production; positive regulation of nitrogen compound metabolic process; and response to bacterium. Acts upstream of or within several processes, including detection of muramyl dipeptide; positive regulation of intracellular signal transduction; and regulation of gene expression. Located in several cellular components, including Golgi apparatus; basolateral plasma membrane; and phagocytic vesicle. Is anchored component of plasma membrane. Part of protein-containing complex. Implicated in several diseases, including Blau syndrome; autoimmune disease (multiple); gastrointestinal carcinoma; intestinal disease (multiple); and lung disease (multiple). Biomarker of allergic rhinitis and systemic lupus erythematosus.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ACUG; BLAU; BLAUS; CARD15; caspase recruitment domain family, member 15; caspase recruitment domain protein 15; caspase recruitment domain-containing protein 15; CD; CLR16.3; IBD1; inflammatory bowel disease protein 1; NLR family, CARD domain containing 2; NLRC2; NOD-like receptor C2; NOD2B; nucleotide-binding oligomerization domain 2; nucleotide-binding oligomerization domain containing 2; nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 2; nucleotide-binding oligomerization domain-containing protein 2; PSORAS1; YAOS
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1650,693,588 - 50,734,041 (+)EnsemblGRCh38hg38GRCh38
GRCh381650,693,587 - 50,733,077 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371650,727,517 - 50,766,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,288,551 - 49,324,488 (+)NCBINCBI36hg18NCBI36
Build 341649,288,550 - 49,324,488NCBI
Celera1635,246,377 - 35,282,313 (+)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1636,618,016 - 36,653,950 (+)NCBIHuRef
CHM1_11652,138,579 - 52,174,513 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acne  (EXP)
Acute Lung Injury  (ISO)
allergic rhinitis  (IEP)
asthma  (IAGP,ISO)
atherosclerosis  (ISO)
autoimmune disease  (IAGP)
Bacteremia  (IAGP)
bacterial infectious disease  (ISO)
bacterial pneumonia  (ISO)
Behcet's disease  (IAGP)
Blau syndrome  (EXP,IAGP)
breast cancer  (IAGP)
bronchiolitis obliterans  (IAGP)
chronic obstructive pulmonary disease  (IAGP)
colitis  (ISO)
Colonic Neoplasms  (IAGP)
coronary artery disease  (IAGP)
Crohn's disease  (EXP,IAGP)
dermatitis  (EXP)
Experimental Arthritis  (ISO)
Experimental Colitis  (ISO)
familial Mediterranean fever  (IAGP)
gastritis  (IAGP)
gastrointestinal carcinoma  (IAGP)
genetic disease  (IAGP)
Graft vs Host Disease  (IAGP)
Granuloma  (ISO)
hidradenitis suppurativa  (EXP)
inflammatory bowel disease  (EXP,IAGP)
inflammatory bowel disease 1  (IAGP,IEA,ISS)
intestinal disease  (IAGP)
larynx cancer  (IAGP)
Legionnaires' disease  (ISO)
leprosy  (IAGP)
lung cancer  (IAGP)
Lyme disease  (ISO)
meningococcal meningitis  (IAGP)
Metaplasia  (IAGP)
middle cerebral artery infarction  (ISO)
Ocular Toxoplasmosis  (IAGP)
ovarian cancer  (IAGP)
pancreatitis  (ISO)
perinatal necrotizing enterocolitis  (ISO)
PFAPA Syndrome  (IAGP)
Pneumococcal Meningitis  (ISO)
pulmonary sarcoidosis  (IAGP)
pulmonary tuberculosis  (IAGP)
pyoderma gangrenosum  (EXP)
relapsing-remitting multiple sclerosis  (IAGP)
Reperfusion Injury  (ISO)
rhinitis  (IAGP)
Seasonal Allergic Rhinitis  (IAGP)
Sepsis  (IAGP,ISO)
Splenomegaly  (IAGP)
Staphylococcal Pneumonia  (ISO)
systemic lupus erythematosus  (IAGP,IEP)
transient cerebral ischemia  (ISO)
ulcerative colitis  (EXP)
uveitis  (ISO)
YAO SYNDROME  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of immune response  (IEA,ISO)
cellular response to lipopolysaccharide  (IMP)
cellular response to muramyl dipeptide  (IDA,IMP)
cellular response to organic cyclic compound  (IEA,ISO)
cellular response to peptidoglycan  (IEA,ISO)
defense response  (TAS)
defense response to bacterium  (IBA,IDA)
defense response to Gram-positive bacterium  (IEA,ISO)
detection of bacterium  (IDA)
detection of biotic stimulus  (TAS)
detection of muramyl dipeptide  (IDA)
immune system process  (IEA)
innate immune response  (IDA,NAS)
innate immune response in mucosa  (IEA,ISO)
intracellular signal transduction  (IBA,IDA)
maintenance of gastrointestinal epithelium  (IMP)
negative regulation of inflammatory response to antigenic stimulus  (IEA,ISO)
negative regulation of interferon-gamma production  (IEA,ISO)
negative regulation of interleukin-12 production  (IEA,ISO)
negative regulation of interleukin-18 production  (IEA,ISO)
negative regulation of interleukin-2 production  (IEA,ISO)
negative regulation of macrophage apoptotic process  (ISS)
negative regulation of NF-kappaB transcription factor activity  (IEA,ISO)
negative regulation of T cell mediated immunity  (IEA,ISO)
negative regulation of toll-like receptor 2 signaling pathway  (IEA,ISO)
negative regulation of tumor necrosis factor production  (IEA,ISO)
nucleotide-binding oligomerization domain containing 2 signaling pathway  (IDA)
pattern recognition receptor signaling pathway  (IDA)
positive regulation of antibacterial peptide biosynthetic process  (ISO)
positive regulation of B cell activation  (IDA)
positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria  (IEA,ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cytokine production involved in immune response  (IMP)
positive regulation of cytokine production involved in inflammatory response  (IDA)
positive regulation of dendritic cell antigen processing and presentation  (ISS)
positive regulation of dendritic cell cytokine production  (IEA,ISO)
positive regulation of epithelial cell proliferation  (ISS)
positive regulation of ERK1 and ERK2 cascade  (ISO,ISS)
positive regulation of gamma-delta T cell activation  (ISS)
positive regulation of humoral immune response mediated by circulating immunoglobulin  (IEA,ISO)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (IBA,IDA)
positive regulation of innate immune response  (IEA,ISO)
positive regulation of interleukin-1 beta production  (IDA,IMP)
positive regulation of interleukin-10 production  (ISS)
positive regulation of interleukin-12 production  (IEA,ISO)
positive regulation of interleukin-17 production  (IMP)
positive regulation of interleukin-6 production  (IDA,ISO)
positive regulation of interleukin-8 production  (IMP)
positive regulation of JNK cascade  (IDA)
positive regulation of MAP kinase activity  (ISS)
positive regulation of MAPK cascade  (ISO)
positive regulation of monocyte chemotactic protein-1 production  (IEA)
positive regulation of NF-kappaB transcription factor activity  (IDA,IMP)
positive regulation of NIK/NF-kappaB signaling  (IMP,ISO)
positive regulation of nitric-oxide synthase biosynthetic process  (ISS)
positive regulation of Notch signaling pathway  (ISS)
positive regulation of oxidoreductase activity  (ISS)
positive regulation of peptidyl-tyrosine phosphorylation  (IEA,ISO)
positive regulation of phagocytosis  (IEA,ISO)
positive regulation of phosphatidylinositol 3-kinase activity  (ISS)
positive regulation of prostaglandin-E synthase activity  (ISS)
positive regulation of prostaglandin-endoperoxide synthase activity  (ISS)
positive regulation of protein K63-linked ubiquitination  (IMP)
positive regulation of protein ubiquitination  (ISO)
positive regulation of stress-activated MAPK cascade  (IDA)
positive regulation of transcription by RNA polymerase II  (IDA)
positive regulation of tumor necrosis factor production  (IDA,IMP)
positive regulation of type 2 immune response  (IMP)
positive regulation of xenophagy  (IEA,ISO)
regulation of apoptotic process  (IEA)
regulation of inflammatory response  (IC,ISO)
regulation of neutrophil chemotaxis  (IEA,ISO)
response to exogenous dsRNA  (IEA,ISO)
response to lipopolysaccharide  (ISO)
response to muramyl dipeptide  (IBA,IDA,IMP,ISO)
response to nutrient  (IEA,ISO)
response to peptidoglycan  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abdominal pain  (IAGP)
Abnormal chorioretinal morphology  (IAGP)
Abnormal choroid morphology  (IAGP)
Abnormal cranial nerve morphology  (IAGP)
Abnormal retinal vascular morphology  (IAGP)
Abnormal salivary gland morphology  (IAGP)
Abnormal serum interleukin level  (IAGP)
Abnormality of the ear  (IAGP)
Abnormality of the gastrointestinal tract  (IAGP)
Abnormality of the liver  (IAGP)
Anemia  (IAGP)
Aortic aneurysm  (IAGP)
Arthralgia  (IAGP)
Arthritis  (IAGP)
Asthma  (IAGP)
Autosomal dominant inheritance  (IAGP)
Band keratopathy  (IAGP)
Camptodactyly of finger  (IAGP)
Cataract  (IAGP)
Chest pain  (IAGP)
Clear cell renal cell carcinoma  (IAGP)
Crohn's disease  (IAGP)
Cystoid macular edema  (IAGP)
Decreased pulmonary function  (IAGP)
Diarrhea  (IAGP)
Dry skin  (IAGP)
Dyspnea  (IAGP)
Eczema  (IAGP)
Elevated erythrocyte sedimentation rate  (IAGP)
Erythema  (IAGP)
Erythema nodosum  (IAGP)
Facial palsy  (IAGP)
Fever  (IAGP)
Flexion contracture of toe  (IAGP)
Glaucoma  (IAGP)
Growth delay  (IAGP)
Heterogeneous  (IAGP)
Hyperpigmentation of the skin  (IAGP)
Hypertension  (IAGP)
Ichthyosis  (IAGP)
Increased circulating IgG level  (IAGP)
Intermittent generalized erythematous papular rash  (IAGP)
Intestinal obstruction  (IAGP)
Iridocyclitis  (IAGP)
Iritis  (IAGP)
Joint swelling  (IAGP)
Keratitis  (IAGP)
Keratoconjunctivitis sicca  (IAGP)
Large vessel vasculitis  (IAGP)
Limitation of joint mobility  (IAGP)
Localized skin lesion  (IAGP)
Lymphadenopathy  (IAGP)
Multifactorial inheritance  (IAGP)
Myalgia  (IAGP)
Nephrolithiasis  (IAGP)
Nephropathy  (IAGP)
Nongranulomatous uveitis  (IAGP)
Oral ulcer  (IAGP)
Papule  (IAGP)
Pericarditis  (IAGP)
Photophobia  (IAGP)
Pleuritis  (IAGP)
Polyarticular arthritis  (IAGP)
Posterior uveitis  (IAGP)
Pulmonary arterial hypertension  (IAGP)
Recurrent aphthous stomatitis  (IAGP)
Recurrent fever  (IAGP)
Retinopathy  (IAGP)
Retrobulbar optic neuritis  (IAGP)
Sepsis  (IAGP)
Skin rash  (IAGP)
Skin ulcer  (IAGP)
Splenomegaly  (IAGP)
Stage 5 chronic kidney disease  (IAGP)
Synovitis  (IAGP)
Tendonitis  (IAGP)
Ulcerative colitis  (IAGP)
Uveitis  (IAGP)
Ventricular hypertrophy  (IAGP)
Visual acuity test abnormality  (IAGP)
Visual loss  (IAGP)
Weight loss  (IAGP)
Xerostomia  (IAGP)
References

References - curated
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Additional References at PubMed
PMID:7809109   PMID:8587604   PMID:8894707   PMID:9541106   PMID:9797359   PMID:9924607   PMID:10053016   PMID:10439963   PMID:11087742   PMID:11318544   PMID:11385577   PMID:11425413  
PMID:11472070   PMID:11752413   PMID:11834373   PMID:11837220   PMID:11875755   PMID:11890351   PMID:11910336   PMID:11910337   PMID:11938034   PMID:11976792   PMID:12019209   PMID:12019468  
PMID:12020527   PMID:12105836   PMID:12105838   PMID:12115195   PMID:12115249   PMID:12198692   PMID:12202985   PMID:12210321   PMID:12360101   PMID:12397216   PMID:12415614   PMID:12454871  
PMID:12459523   PMID:12474146   PMID:12492195   PMID:12508397   PMID:12512038   PMID:12512064   PMID:12514169   PMID:12527755   PMID:12529700   PMID:12532667   PMID:12556233   PMID:12563685  
PMID:12577202   PMID:12595627   PMID:12595906   PMID:12617879   PMID:12618963   PMID:12626759   PMID:12631666   PMID:12631668   PMID:12631669   PMID:12649405   PMID:12650796   PMID:12671896  
PMID:12671897   PMID:12673278   PMID:12810925   PMID:12823148   PMID:12851870   PMID:12871942   PMID:12876263   PMID:12879366   PMID:12923865   PMID:12930309   PMID:12940436   PMID:13680285  
PMID:14508222   PMID:14516815   PMID:14522785   PMID:14555911   PMID:14597055   PMID:14627676   PMID:14638352   PMID:14644139   PMID:14690304   PMID:14743885   PMID:14747834   PMID:14750643  
PMID:14971813   PMID:14996717   PMID:15002819   PMID:15008984   PMID:15016407   PMID:15024686   PMID:15044951   PMID:15046221   PMID:15046222   PMID:15052696   PMID:15056084   PMID:15075345  
PMID:15095853   PMID:15107016   PMID:15107849   PMID:15140210   PMID:15142196   PMID:15145460   PMID:15168811   PMID:15180737   PMID:15190267   PMID:15194649   PMID:15202784   PMID:15214053  
PMID:15276183   PMID:15279649   PMID:15289769   PMID:15308523   PMID:15320482   PMID:15367194   PMID:15377357   PMID:15459013   PMID:15468360   PMID:15472511   PMID:15479689   PMID:15489579  
PMID:15492242   PMID:15516360   PMID:15520108   PMID:15527324   PMID:15539411   PMID:15539413   PMID:15551253   PMID:15571586   PMID:15571588   PMID:15578724   PMID:15620648   PMID:15626887  
PMID:15626888   PMID:15637755   PMID:15638227   PMID:15643611   PMID:15653568   PMID:15654786   PMID:15655821   PMID:15666202   PMID:15667501   PMID:15685536   PMID:15712650   PMID:15753091  
PMID:15770725   PMID:15778542   PMID:15785318   PMID:15795594   PMID:15800781   PMID:15803022   PMID:15807862   PMID:15840263   PMID:15842589   PMID:15843082   PMID:15927452   PMID:15930978  
PMID:15967635   PMID:15967716   PMID:15973116   PMID:15973118   PMID:15984988   PMID:15990626   PMID:15998797   PMID:16000642   PMID:16002353   PMID:16009674   PMID:16010583   PMID:16080653  
PMID:16115863   PMID:16126943   PMID:16133971   PMID:16134725   PMID:16134731   PMID:16148063   PMID:16161956   PMID:16167972   PMID:16174099   PMID:16179784   PMID:16198136   PMID:16203728  
PMID:16230083   PMID:16239840   PMID:16239841   PMID:16244543   PMID:16255050   PMID:16257953   PMID:16260731   PMID:16266221   PMID:16278823   PMID:16279904   PMID:16306764   PMID:16315780  
PMID:16319062   PMID:16344053   PMID:16344054   PMID:16385250   PMID:16389181   PMID:16393227   PMID:16397396   PMID:16402184   PMID:16414084   PMID:16416181   PMID:16424393   PMID:16436969  
PMID:16437636   PMID:16437728   PMID:16441470   PMID:16446977   PMID:16454837   PMID:16461743   PMID:16485124   PMID:16489646   PMID:16492792   PMID:16493424   PMID:16493449   PMID:16494109  
PMID:16494592   PMID:16510569   PMID:16519819   PMID:16522788   PMID:16534418   PMID:16611251   PMID:16614992   PMID:16641610   PMID:16669960   PMID:16670523   PMID:16670524   PMID:16714539  
PMID:16716969   PMID:16741608   PMID:16771961   PMID:16773683   PMID:16804398   PMID:16804670   PMID:16819374   PMID:16825909   PMID:16840031   PMID:16897777   PMID:16907704   PMID:16920047  
PMID:16933467   PMID:16949315   PMID:16952484   PMID:16965521   PMID:16977346   PMID:17005562   PMID:17006998   PMID:17009307   PMID:17012967   PMID:17018387   PMID:17020469   PMID:17030188  
PMID:17057186   PMID:17058067   PMID:17068223   PMID:17096091   PMID:17100974   PMID:17100976   PMID:17101573   PMID:17113749   PMID:17119385   PMID:17131470   PMID:17142621   PMID:17156146  
PMID:17156193   PMID:17157607   PMID:17160430   PMID:17171451   PMID:17174426   PMID:17187069   PMID:17200669   PMID:17206080   PMID:17206636   PMID:17206688   PMID:17258734   PMID:17269998  
PMID:17278126   PMID:17285593   PMID:17301648   PMID:17303577   PMID:17319929   PMID:17333217   PMID:17337451   PMID:17337463   PMID:17348859   PMID:17351900   PMID:17355968   PMID:17356065  
PMID:17379562   PMID:17389014   PMID:17389035   PMID:17393391   PMID:17403538   PMID:17404888   PMID:17417801   PMID:17420470   PMID:17435756   PMID:17447842   PMID:17451203   PMID:17452051  
PMID:17460484   PMID:17476680   PMID:17484863   PMID:17484864   PMID:17486745   PMID:17489054   PMID:17498224   PMID:17509030   PMID:17538984   PMID:17548659   PMID:17554300   PMID:17558494  
PMID:17558906   PMID:17563761   PMID:17565648   PMID:17570063   PMID:17595233   PMID:17600378   PMID:17613538   PMID:17620097   PMID:17652449   PMID:17660460   PMID:17661913   PMID:17666747  
PMID:17684544   PMID:17690884   PMID:17703412   PMID:17705850   PMID:17719742   PMID:17724347   PMID:17725592   PMID:17763471   PMID:17786191   PMID:17804789   PMID:17852840   PMID:17876878  
PMID:17877509   PMID:17892524   PMID:17894849   PMID:17907287   PMID:17911997   PMID:17919942   PMID:17941079   PMID:17964196   PMID:17964870   PMID:17965022   PMID:17968944   PMID:17976376  
PMID:17978873   PMID:17980027   PMID:18022867   PMID:18022871   PMID:18028374   PMID:18047543   PMID:18052659   PMID:18069758   PMID:18088053   PMID:18090989   PMID:18092344   PMID:18092345  
PMID:18096043   PMID:18157816   PMID:18162085   PMID:18166373   PMID:18182678   PMID:18184136   PMID:18200509   PMID:18200510   PMID:18213697   PMID:18219096   PMID:18227809   PMID:18240302  
PMID:18243161   PMID:18248772   PMID:18253730   PMID:18256385   PMID:18271063   PMID:18305068   PMID:18317454   PMID:18329614   PMID:18340358   PMID:18341489   PMID:18367950   PMID:18371139  
PMID:18371140   PMID:18382655   PMID:18383179   PMID:18384487   PMID:18413660   PMID:18433468   PMID:18438406   PMID:18466472   PMID:18489434   PMID:18507017   PMID:18511561   PMID:18521914  
PMID:18521924   PMID:18541930   PMID:18563169   PMID:18573991   PMID:18574154   PMID:18576390   PMID:18587394   PMID:18594982   PMID:18617779   PMID:18619921   PMID:18633131   PMID:18640012  
PMID:18647548   PMID:18670786   PMID:18676680   PMID:18680223   PMID:18698678   PMID:18715515   PMID:18756601   PMID:18758419   PMID:18758464   PMID:18787464   PMID:18804983   PMID:18818748  
PMID:18819462   PMID:18824555   PMID:18855982   PMID:18938111   PMID:18942751   PMID:18942754   PMID:18972554   PMID:18976442   PMID:18985712   PMID:19019335   PMID:19050632   PMID:19058231  
PMID:19074885   PMID:19079230   PMID:19098858   PMID:19103524   PMID:19103559   PMID:19112191   PMID:19120480   PMID:19139201   PMID:19169908   PMID:19170196   PMID:19174806   PMID:19183163  
PMID:19184348   PMID:19184350   PMID:19189651   PMID:19200604   PMID:19219079   PMID:19235913   PMID:19240061   PMID:19244164   PMID:19247692   PMID:19253375   PMID:19258923   PMID:19262523  
PMID:19266573   PMID:19273470   PMID:19275920   PMID:19299732   PMID:19305026   PMID:19319132   PMID:19337309   PMID:19337385   PMID:19349988   PMID:19397946   PMID:19406482   PMID:19422935  
PMID:19423540   PMID:19426395   PMID:19434699   PMID:19479836   PMID:19482182   PMID:19527514   PMID:19535145   PMID:19570052   PMID:19570976   PMID:19572373   PMID:19579027   PMID:19579029  
PMID:19590455   PMID:19592251   PMID:19625176   PMID:19638967   PMID:19641059   PMID:19659808   PMID:19664207   PMID:19667203   PMID:19679065   PMID:19692168   PMID:19693669   PMID:19701189  
PMID:19701969   PMID:19713276   PMID:19721713   PMID:19728064   PMID:19759286   PMID:19760754   PMID:19787357   PMID:19809335   PMID:19822951   PMID:19826411   PMID:19830732   PMID:19843337  
PMID:19853919   PMID:19880660   PMID:19888426   PMID:19896081   PMID:19898471   PMID:19907652   PMID:19912254   PMID:19913121   PMID:19948723   PMID:19966812   PMID:20002790   PMID:20018961  
PMID:20024904   PMID:20027650   PMID:20032092   PMID:20047977   PMID:20066736   PMID:20079790   PMID:20082483   PMID:20087966   PMID:20110711   PMID:20124104   PMID:20140262   PMID:20155851  
PMID:20177049   PMID:20182871   PMID:20232407   PMID:20298285   PMID:20332463   PMID:20346235   PMID:20362271   PMID:20371648   PMID:20373538   PMID:20379614   PMID:20380008   PMID:20384614  
PMID:20385562   PMID:20387682   PMID:20403997   PMID:20406964   PMID:20412372   PMID:20428899   PMID:20436512   PMID:20438785   PMID:20441518   PMID:20452482   PMID:20453000   PMID:20483763  
PMID:20485703   PMID:20503287   PMID:20524760   PMID:20525885   PMID:20534456   PMID:20537165   PMID:20541026   PMID:20549515   PMID:20565245   PMID:20570966   PMID:20583427   PMID:20601676  
PMID:20622911   PMID:20628086   PMID:20632099   PMID:20637199   PMID:20646321   PMID:20673868   PMID:20676658   PMID:20698950   PMID:20713205   PMID:20800603   PMID:20839241   PMID:20844241  
PMID:20850627   PMID:20854823   PMID:20865702   PMID:20875485   PMID:20886065   PMID:20940596   PMID:20959815   PMID:20962850   PMID:21039068   PMID:21040192   PMID:21040358   PMID:21042538  
PMID:21097508   PMID:21102463   PMID:21123652   PMID:21172192   PMID:21206965   PMID:21209938   PMID:21215810   PMID:21218092   PMID:21241317   PMID:21263023   PMID:21274544   PMID:21310790  
PMID:21335489   PMID:21337670   PMID:21342182   PMID:21343918   PMID:21385537   PMID:21388357   PMID:21391291   PMID:21410503   PMID:21448648   PMID:21573891   PMID:21596301   PMID:21625457  
PMID:21659536   PMID:21665963   PMID:21690088   PMID:21699783   PMID:21716313   PMID:21730793   PMID:21734346   PMID:21734790   PMID:21739538   PMID:21744420   PMID:21745302   PMID:21745515  
PMID:21799103   PMID:21873635   PMID:21887730   PMID:21931826   PMID:21978001   PMID:22139875   PMID:22147245   PMID:22212192   PMID:22218461   PMID:22266421   PMID:22275320   PMID:22286692  
PMID:22289211   PMID:22319155   PMID:22346247   PMID:22397822   PMID:22412388   PMID:22416979   PMID:22426692   PMID:22464675   PMID:22502597   PMID:22504414   PMID:22509093   PMID:22549783  
PMID:22563200   PMID:22571967   PMID:22605977   PMID:22607974   PMID:22665475   PMID:22684479   PMID:22700971   PMID:22719818   PMID:22730064   PMID:22739221   PMID:22795647   PMID:22807259  
PMID:22815893   PMID:22829933   PMID:22879519   PMID:22936669   PMID:22997500   PMID:22998942   PMID:23019338   PMID:23085276   PMID:23102769   PMID:23109427   PMID:23121969   PMID:23128233  
PMID:23173613   PMID:23287275   PMID:23300079   PMID:23322906   PMID:23376921   PMID:23409731   PMID:23437331   PMID:23488593   PMID:23493074   PMID:23558906   PMID:23562557   PMID:23594678  
PMID:23615072   PMID:23651603   PMID:23709157   PMID:23711367   PMID:23712977   PMID:23740944   PMID:23806334   PMID:23818254   PMID:23824692   PMID:23850724   PMID:23868940   PMID:23872065  
PMID:23888881   PMID:23892590   PMID:23901396   PMID:23977330   PMID:23991106   PMID:24015287   PMID:24018334   PMID:24047397   PMID:24054330   PMID:24076061   PMID:24098051   PMID:24099766  
PMID:24295830   PMID:24297055   PMID:24298015   PMID:24345423   PMID:24360029   PMID:24366254   PMID:24391456   PMID:24393249   PMID:24444388   PMID:24586700   PMID:24597572   PMID:24627602  
PMID:24651958   PMID:24656308   PMID:24670424   PMID:24671169   PMID:24679666   PMID:24682985   PMID:24695226   PMID:24719038   PMID:24722226   PMID:24781050   PMID:24782627   PMID:24790089  
PMID:24803813   PMID:24832447   PMID:24901824   PMID:24932916   PMID:24960071   PMID:25024364   PMID:25042478   PMID:25048429   PMID:25053139   PMID:25093298   PMID:25148897   PMID:25170077  
PMID:25171511   PMID:25183734   PMID:25248089   PMID:25259511   PMID:25326182   PMID:25335775   PMID:25365249   PMID:25367361   PMID:25549945   PMID:25642632   PMID:25649363   PMID:25664710  
PMID:25670499   PMID:25674246   PMID:25722298   PMID:25801769   PMID:25825396   PMID:25840495   PMID:25891078   PMID:25910289   PMID:25922834   PMID:25933107   PMID:25988661   PMID:26019273  
PMID:26042516   PMID:26070941   PMID:26116899   PMID:26147989   PMID:26167078   PMID:26235265   PMID:26238283   PMID:26316104   PMID:26332444   PMID:26388234   PMID:26517420   PMID:26521691  
PMID:26562405   PMID:26606664   PMID:26670046   PMID:26725065   PMID:26752461   PMID:26752466   PMID:26836588   PMID:26902226   PMID:26902715   PMID:26946932   PMID:26976200   PMID:26980698  
PMID:27000222   PMID:27004566   PMID:27007849   PMID:27050483   PMID:27077833   PMID:27107867   PMID:27273576   PMID:27290609   PMID:27297389   PMID:27306066   PMID:27335178   PMID:27357501  
PMID:27404661   PMID:27419275   PMID:27426943   PMID:27533749   PMID:27545878   PMID:27563808   PMID:27625029   PMID:27651416   PMID:27748583   PMID:27791288   PMID:27812135   PMID:27830463  
PMID:27885704   PMID:27889082   PMID:27917621   PMID:27932194   PMID:28130683   PMID:28137583   PMID:28204942   PMID:28266028   PMID:28403163   PMID:28404814   PMID:28436939   PMID:28608226  
PMID:28656966   PMID:28668336   PMID:28673961   PMID:28682159   PMID:28715406   PMID:28765628   PMID:28792733   PMID:28819537   PMID:28834747   PMID:28836875   PMID:28912259   PMID:29055077  
PMID:29096557   PMID:29123157   PMID:29211798   PMID:29235260   PMID:29358789   PMID:29462388   PMID:29471675   PMID:29554915   PMID:29572197   PMID:29615116   PMID:29723492   PMID:29880914  
PMID:29902461   PMID:29980664   PMID:30026309   PMID:30069743   PMID:30167848   PMID:30213296   PMID:30279485   PMID:30284387   PMID:30289892   PMID:30321637   PMID:30323326   PMID:30353760  
PMID:30367515   PMID:30378174   PMID:30430799   PMID:30445599   PMID:30594350   PMID:30702490   PMID:30760380   PMID:30762338   PMID:30769939   PMID:30833792   PMID:30874883   PMID:30903318  
PMID:30950247   PMID:31084224   PMID:31114588   PMID:31186034   PMID:31379806   PMID:31556326   PMID:31649195   PMID:31651650   PMID:31714311   PMID:31757425   PMID:31760574   PMID:31875558  
PMID:32085886   PMID:32094205   PMID:32204157   PMID:32319602   PMID:32424308   PMID:32433683   PMID:32514016   PMID:32578848   PMID:32596371   PMID:32597225   PMID:32647028   PMID:32707200  
PMID:32986710   PMID:33011746   PMID:33059653   PMID:33413510   PMID:33431850   PMID:33789339   PMID:34307192  


Genomics

Comparative Map Data
NOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1650,693,588 - 50,734,041 (+)EnsemblGRCh38hg38GRCh38
GRCh381650,693,587 - 50,733,077 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371650,727,517 - 50,766,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361649,288,551 - 49,324,488 (+)NCBINCBI36hg18NCBI36
Build 341649,288,550 - 49,324,488NCBI
Celera1635,246,377 - 35,282,313 (+)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1636,618,016 - 36,653,950 (+)NCBIHuRef
CHM1_11652,138,579 - 52,174,513 (+)NCBICHM1_1
Nod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,373,943 - 89,415,103 (+)NCBIGRCm39mm39
GRCm39 Ensembl889,373,943 - 89,415,102 (+)Ensembl
GRCm38888,647,315 - 88,688,474 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,647,315 - 88,688,474 (+)EnsemblGRCm38mm10GRCm38
MGSCv37891,171,246 - 91,212,373 (+)NCBIGRCm37mm9NCBIm37
MGSCv36891,537,452 - 91,578,579 (+)NCBImm8
Celera892,927,621 - 92,968,882 (+)NCBICelera
Cytogenetic Map8C3NCBI
Nod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21918,379,720 - 18,422,817 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1918,382,439 - 18,417,177 (-)Ensembl
Rnor_6.01919,342,061 - 19,389,366 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,332,594 - 19,377,492 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01930,375,065 - 30,409,527 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41919,662,337 - 19,697,341 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11919,670,606 - 19,715,845 (-)NCBI
Celera1918,269,940 - 18,304,004 (-)NCBICelera
Cytogenetic Map19p11NCBI
Nod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,746,004 - 8,782,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554338,746,213 - 8,780,119 (+)NCBIChiLan1.0ChiLan1.0
NOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11649,834,385 - 49,873,783 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,837,891 - 49,873,773 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01630,955,976 - 30,995,451 (+)NCBIMhudiblu_PPA_v0panPan3
NOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,636,850 - 64,667,232 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,635,519 - 64,667,232 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,209,788 - 61,240,085 (-)NCBI
ROS_Cfam_1.0265,182,339 - 65,218,538 (-)NCBI
UMICH_Zoey_3.1262,006,039 - 62,036,328 (-)NCBI
UNSW_CanFamBas_1.0263,025,931 - 63,056,292 (-)NCBI
UU_Cfam_GSD_1.0263,913,478 - 63,943,824 (-)NCBI
Nod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934955,844,066 - 55,881,006 (-)NCBI
SpeTri2.0NW_0049364753,708,069 - 3,742,845 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,130,938 - 34,177,534 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1634,132,127 - 34,167,446 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NOD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,492,158 - 36,531,766 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl536,496,414 - 36,530,499 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604739,970,704 - 40,009,792 (-)NCBIVero_WHO_p1.0
Nod2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247575,956,873 - 6,000,052 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D16S503  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371663,598,803 - 63,599,029UniSTSGRCh37
Build 361662,156,304 - 62,156,530RGDNCBI36
Celera1648,102,119 - 48,102,351RGD
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map16q21UniSTS
HuRef1649,467,627 - 49,467,828UniSTS
Marshfield Genetic Map1683.55RGD
Marshfield Genetic Map1683.55UniSTS
Genethon Genetic Map1681.8UniSTS
GeneMap99-GB4 RH Map16384.01UniSTS
Whitehead-RH Map16283.8UniSTS
Whitehead-YAC Contig Map16 UniSTS
NCBI RH Map16486.1UniSTS
D16S3089  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371660,509,450 - 60,509,641UniSTSGRCh37
Build 361659,066,951 - 59,067,142RGDNCBI36
Celera1645,014,114 - 45,014,287RGD
Cytogenetic Map16q21UniSTS
HuRef1646,378,494 - 46,378,667UniSTS
Marshfield Genetic Map1680.0UniSTS
Marshfield Genetic Map1680.0RGD
Genethon Genetic Map1678.1UniSTS
TNG Radiation Hybrid Map1625346.0UniSTS
deCODE Assembly Map1679.52UniSTS
Stanford-G3 RH Map162211.0UniSTS
GeneMap99-GB4 RH Map16377.37UniSTS
Whitehead-YAC Contig Map16 UniSTS
NCBI RH Map16483.3UniSTS
GeneMap99-G3 RH Map162655.0UniSTS
D16S415  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371653,670,735 - 53,670,960UniSTSGRCh37
Build 361652,228,236 - 52,228,461RGDNCBI36
Celera1638,185,543 - 38,185,768RGD
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map16p11.2UniSTS
HuRef1639,557,855 - 39,558,082UniSTS
Marshfield Genetic Map1667.62RGD
Marshfield Genetic Map1667.62UniSTS
Genethon Genetic Map1665.6UniSTS
Whitehead-RH Map16264.0UniSTS
Whitehead-YAC Contig Map16 UniSTS
D16S409  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371648,775,871 - 48,776,009UniSTSGRCh37
GRCh371648,775,868 - 48,776,017UniSTSGRCh37
Build 361647,333,369 - 47,333,518RGDNCBI36
Celera1633,288,574 - 33,288,723RGD
Celera1633,288,577 - 33,288,715UniSTS
HuRef1634,666,518 - 34,666,667UniSTS
HuRef1634,666,521 - 34,666,659UniSTS
Marshfield Genetic Map1658.46RGD
Marshfield Genetic Map1658.46UniSTS
Genethon Genetic Map1656.2UniSTS
TNG Radiation Hybrid Map1619101.0UniSTS
deCODE Assembly Map1658.41UniSTS
Stanford-G3 RH Map161676.0UniSTS
GeneMap99-GB4 RH Map16327.21UniSTS
Whitehead-RH Map16254.8UniSTS
Whitehead-YAC Contig Map16 UniSTS
NCBI RH Map16357.6UniSTS
GeneMap99-G3 RH Map162120.0UniSTS
D16S419  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371652,953,362 - 52,953,511UniSTSGRCh37
Build 361651,510,863 - 51,511,012RGDNCBI36
Celera1637,468,252 - 37,468,401RGD
Cytogenetic Map16q21UniSTS
Cytogenetic Map16p11.2UniSTS
HuRef1638,840,950 - 38,841,099UniSTS
Marshfield Genetic Map1667.4RGD
Marshfield Genetic Map1667.4UniSTS
Genethon Genetic Map1665.6UniSTS
deCODE Assembly Map1665.31UniSTS
GeneMap99-GB4 RH Map16347.05UniSTS
Whitehead-RH Map16232.1UniSTS
Whitehead-YAC Contig Map16 UniSTS
D16S753  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371631,273,504 - 31,273,772UniSTSGRCh37
Build 361631,181,005 - 31,181,273RGDNCBI36
Celera1629,024,285 - 29,024,549RGD
Cytogenetic Map16q21UniSTS
Cytogenetic Map16p11.2UniSTS
HuRef1628,834,287 - 28,834,547UniSTS
Marshfield Genetic Map1657.79UniSTS
Marshfield Genetic Map1657.79RGD
deCODE Assembly Map1656.8UniSTS
D16S514  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371662,338,076 - 62,338,196UniSTSGRCh37
GRCh371662,338,056 - 62,338,203UniSTSGRCh37
Build 361660,895,557 - 60,895,704RGDNCBI36
Celera1646,841,923 - 46,842,076RGD
Celera1646,841,943 - 46,842,069UniSTS
HuRef1648,207,159 - 48,207,306UniSTS
HuRef1648,207,179 - 48,207,299UniSTS
Marshfield Genetic Map1681.15RGD
Marshfield Genetic Map1681.15UniSTS
Genethon Genetic Map1680.0UniSTS
TNG Radiation Hybrid Map1626463.0UniSTS
Stanford-G3 RH Map162258.0UniSTS
GeneMap99-GB4 RH Map16381.58UniSTS
Whitehead-RH Map16283.9UniSTS
Whitehead-YAC Contig Map16 UniSTS
NCBI RH Map16486.1UniSTS
GeneMap99-G3 RH Map162702.0UniSTS
D16S267  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371663,086,608 - 63,086,760UniSTSGRCh37
Build 361661,644,109 - 61,644,261RGDNCBI36
Celera1647,589,932 - 47,590,096RGD
Cytogenetic Map16q21UniSTS
HuRef1648,955,203 - 48,955,367UniSTS
Marshfield Genetic Map1681.15UniSTS
Marshfield Genetic Map1681.15RGD
deCODE Assembly Map1681.25UniSTS
D16S408  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371656,320,496 - 56,320,744UniSTSGRCh37
GRCh371656,320,527 - 56,320,708UniSTSGRCh37
Build 361654,878,028 - 54,878,209RGDNCBI36
Celera1640,817,346 - 40,817,525RGD
Celera1640,817,315 - 40,817,561UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map16q13-q21UniSTS
Cytogenetic Map16q13UniSTS
HuRef1642,190,927 - 42,191,173UniSTS
HuRef1642,190,958 - 42,191,137UniSTS
Marshfield Genetic Map1674.44RGD
Marshfield Genetic Map1674.44UniSTS
Genethon Genetic Map1672.6UniSTS
deCODE Assembly Map1671.56UniSTS
Stanford-G3 RH Map161982.0UniSTS
GeneMap99-GB4 RH Map16359.62UniSTS
Whitehead-RH Map16269.4UniSTS
Whitehead-YAC Contig Map16 UniSTS
NCBI RH Map16441.9UniSTS
GeneMap99-G3 RH Map162426.0UniSTS
D16S411  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371649,736,739 - 49,736,966UniSTSGRCh37
GRCh371649,736,735 - 49,736,972UniSTSGRCh37
Build 361648,294,236 - 48,294,473RGDNCBI36
Celera1634,249,791 - 34,250,014UniSTS
Celera1634,249,787 - 34,250,020RGD
Cytogenetic Map16q12UniSTS
Cytogenetic Map16q21UniSTS
HuRef1635,625,112 - 35,625,335UniSTS
HuRef1635,625,108 - 35,625,341UniSTS
Marshfield Genetic Map1659.68RGD
Genethon Genetic Map1657.8UniSTS
TNG Radiation Hybrid Map1619529.0UniSTS
deCODE Assembly Map1659.49UniSTS
Stanford-G3 RH Map161765.0UniSTS
GeneMap99-GB4 RH Map16340.44UniSTS
NCBI RH Map16360.2UniSTS
GeneMap99-G3 RH Map162209.0UniSTS
G09530  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,757,748 - 50,757,895UniSTSGRCh37
Build 361649,315,249 - 49,315,396RGDNCBI36
Celera1635,273,074 - 35,273,221RGD
Cytogenetic Map16q21UniSTS
HuRef1636,644,711 - 36,644,858UniSTS
Whitehead-RH Map16258.6UniSTS
D16S2730  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,732,667 - 50,732,770UniSTSGRCh37
Build 361649,290,168 - 49,290,271RGDNCBI36
Celera1635,247,994 - 35,248,097RGD
Cytogenetic Map16q21UniSTS
HuRef1636,619,633 - 36,619,736UniSTS
D16S2874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,762,971 - 50,763,113UniSTSGRCh37
Build 361649,320,472 - 49,320,614RGDNCBI36
Celera1635,278,297 - 35,278,439RGD
Cytogenetic Map16q21UniSTS
HuRef1636,649,934 - 36,650,076UniSTS
D16S2885  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,732,669 - 50,732,771UniSTSGRCh37
Build 361649,290,170 - 49,290,272RGDNCBI36
Celera1635,247,996 - 35,248,098RGD
Cytogenetic Map16q21UniSTS
HuRef1636,619,635 - 36,619,737UniSTS
D16S3393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371664,565,757 - 64,565,944UniSTSGRCh37
Build 361663,123,258 - 63,123,445RGDNCBI36
Celera1649,069,460 - 49,069,659RGD
Cytogenetic Map16q21UniSTS
HuRef1650,435,929 - 50,436,124UniSTS
Marshfield Genetic Map1684.75UniSTS
deCODE Assembly Map1682.7UniSTS
G67955  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,763,704 - 50,763,931UniSTSGRCh37
Build 361649,321,205 - 49,321,432RGDNCBI36
Celera1635,279,030 - 35,279,257RGD
Cytogenetic Map16q21UniSTS
HuRef1636,650,667 - 36,650,894UniSTS
G67947  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,744,447 - 50,744,868UniSTSGRCh37
Build 361649,301,948 - 49,302,369RGDNCBI36
Celera1635,259,774 - 35,260,195RGD
Cytogenetic Map16q21UniSTS
HuRef1636,631,414 - 36,631,835UniSTS
G67948  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,745,127 - 50,745,572UniSTSGRCh37
Build 361649,302,628 - 49,303,073RGDNCBI36
Celera1635,260,454 - 35,260,899RGD
Cytogenetic Map16q21UniSTS
HuRef1636,632,094 - 36,632,539UniSTS
G67949  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,745,500 - 50,745,955UniSTSGRCh37
Build 361649,303,001 - 49,303,456RGDNCBI36
Celera1635,260,827 - 35,261,282RGD
Cytogenetic Map16q21UniSTS
HuRef1636,632,467 - 36,632,922UniSTS
G67950  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,745,831 - 50,746,324UniSTSGRCh37
Build 361649,303,332 - 49,303,825RGDNCBI36
Celera1635,261,158 - 35,261,651RGD
Cytogenetic Map16q21UniSTS
HuRef1636,632,798 - 36,633,291UniSTS
G67951  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,756,300 - 50,756,679UniSTSGRCh37
Build 361649,313,801 - 49,314,180RGDNCBI36
Celera1635,271,627 - 35,272,006RGD
Cytogenetic Map16q21UniSTS
HuRef1636,643,264 - 36,643,643UniSTS
G67952  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,759,202 - 50,759,582UniSTSGRCh37
Build 361649,316,703 - 49,317,083RGDNCBI36
Celera1635,274,528 - 35,274,908RGD
Cytogenetic Map16q21UniSTS
HuRef1636,646,165 - 36,646,545UniSTS
G67946  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,730,141 - 50,730,347UniSTSGRCh37
Build 361649,287,642 - 49,287,848RGDNCBI36
Celera1635,245,468 - 35,245,674RGD
Cytogenetic Map16q21UniSTS
HuRef1636,617,107 - 36,617,313UniSTS
PMC356064P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,745,127 - 50,745,300UniSTSGRCh37
Build 361649,302,628 - 49,302,801RGDNCBI36
Celera1635,260,454 - 35,260,627RGD
Cytogenetic Map16q21UniSTS
HuRef1636,632,094 - 36,632,267UniSTS
CARD15_3616  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371650,766,282 - 50,767,162UniSTSGRCh37
Build 361649,323,783 - 49,324,663RGDNCBI36
Celera1635,281,608 - 35,282,488RGD
HuRef1636,653,245 - 36,654,125UniSTS
D16S409  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q21UniSTS
TNG Radiation Hybrid Map1619101.0UniSTS
Stanford-G3 RH Map161676.0UniSTS
NCBI RH Map16357.6UniSTS
GeneMap99-G3 RH Map162120.0UniSTS
D16S514  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q21UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map16q12.1UniSTS
TNG Radiation Hybrid Map1626463.0UniSTS
Stanford-G3 RH Map162258.0UniSTS
GeneMap99-GB4 RH Map16381.58UniSTS
NCBI RH Map16486.1UniSTS
GeneMap99-G3 RH Map162702.0UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4286
Count of miRNA genes:1191
Interacting mature miRNAs:1541
Transcripts:ENST00000300589, ENST00000524712, ENST00000526417, ENST00000527052, ENST00000527070, ENST00000529633, ENST00000531674, ENST00000532206, ENST00000534057, ENST00000534067
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2 483 4 8 942 3 1155 3 8 4 132 91 5 1 645
Low 2004 1878 1013 432 851 275 2452 1149 1276 190 1110 1121 165 1172 1570 2 2
Below cutoff 403 628 697 176 81 178 700 1012 2404 190 177 312 1 31 573 1

Sequence