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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | cholestasis | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | cholestasis | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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# | Reference Title | Reference Citation |
1. | GOAs Human GO annotations | GOA_HUMAN data from the GO Consortium |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10833435 | PMID:11054535 | PMID:12477932 | PMID:14574404 | PMID:14702039 | PMID:15146197 | PMID:15489334 | PMID:21873635 | PMID:21903422 | PMID:23455924 | PMID:24778252 |
PMID:26186194 | PMID:26496610 | PMID:26675814 | PMID:28514442 | PMID:29449720 | PMID:30108131 | PMID:30790272 | PMID:31091453 | PMID:31343991 | PMID:31753913 | PMID:32296183 | PMID:32513696 |
PMID:32694731 | PMID:33961781 | PMID:35007762 | PMID:35013218 | PMID:35509820 | PMID:35559673 | PMID:35563538 | PMID:35844135 |
GTPBP2 (Homo sapiens - human) |
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Gtpbp2 (Mus musculus - house mouse) |
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Gtpbp2 (Rattus norvegicus - Norway rat) |
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Gtpbp2 (Chinchilla lanigera - long-tailed chinchilla) |
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GTPBP2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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GTPBP2 (Canis lupus familiaris - dog) |
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Gtpbp2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GTPBP2 (Sus scrofa - pig) |
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GTPBP2 (Chlorocebus sabaeus - green monkey) |
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Gtpbp2 (Heterocephalus glaber - naked mole-rat) |
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Variants in GTPBP2
121 total Variants ![]() |
Name | Type | Condition(s) | Position(s) | Clinical significance |
NM_019096.5(GTPBP2):c.1219C>T (p.Gln407Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV000655891] | Chr6:43623950 [GRCh38] Chr6:43591687 [GRCh37] Chr6:6p21.1 |
pathogenic |
GRCh38/hg38 6p21.1(chr6:42368558-44590544)x1 | copy number loss | See cases [RCV000051011] | Chr6:42368558..44590544 [GRCh38] Chr6:42336296..44558281 [GRCh37] Chr6:42444274..44666259 [NCBI36] Chr6:6p21.1 |
pathogenic |
GRCh38/hg38 6p21.1(chr6:42133625-44106194)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051899]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051899]|See cases [RCV000051899] | Chr6:42133625..44106194 [GRCh38] Chr6:42101363..44073931 [GRCh37] Chr6:42209341..44181909 [NCBI36] Chr6:6p21.1 |
pathogenic |
GRCh38/hg38 6p21.2-21.1(chr6:37777369-45653843)x1 | copy number loss | See cases [RCV000052181] | Chr6:37777369..45653843 [GRCh38] Chr6:37745145..45621580 [GRCh37] Chr6:37853123..45729558 [NCBI36] Chr6:6p21.2-21.1 |
pathogenic |
GRCh38/hg38 6p21.1-12.3(chr6:41638061-46512949)x1 | copy number loss | See cases [RCV000052182] | Chr6:41638061..46512949 [GRCh38] Chr6:41605799..46480686 [GRCh37] Chr6:41713777..46588645 [NCBI36] Chr6:6p21.1-12.3 |
pathogenic |
NM_019096.4(GTPBP2):c.1397G>C (p.Cys466Ser) | single nucleotide variant | Malignant melanoma [RCV000061437] | Chr6:43622703 [GRCh38] Chr6:43590440 [GRCh37] Chr6:43698418 [NCBI36] Chr6:6p21.1 |
not provided |
GRCh38/hg38 6p21.1(chr6:43537357-43784452)x3 | copy number gain | See cases [RCV000138182] | Chr6:43537357..43784452 [GRCh38] Chr6:43505094..43752189 [GRCh37] Chr6:43613072..43860167 [NCBI36] Chr6:6p21.1 |
uncertain significance |
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 | copy number gain | See cases [RCV000143497] | Chr6:156974..46789291 [GRCh38] Chr6:156974..46757028 [GRCh37] Chr6:101974..46864987 [NCBI36] Chr6:6p25.3-12.3 |
pathogenic |
NM_019096.5(GTPBP2):c.655C>T (p.Arg219Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV002281894] | Chr6:43625413 [GRCh38] Chr6:43593150 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1237-1G>T | single nucleotide variant | Jaberi-Elahi syndrome [RCV000655889] | Chr6:43623796 [GRCh38] Chr6:43591533 [GRCh37] Chr6:6p21.1 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 | copy number gain | See cases [RCV000512067] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) | copy number gain | See cases [RCV000510595] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
NM_019096.5(GTPBP2):c.1408C>T (p.Arg470Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV000655892] | Chr6:43622692 [GRCh38] Chr6:43590429 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.430C>T (p.Arg144Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV000655890] | Chr6:43625833 [GRCh38] Chr6:43593570 [GRCh37] Chr6:6p21.1 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 | copy number gain | not provided [RCV000745403] | Chr6:108666..170980171 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 | copy number gain | not provided [RCV000745400] | Chr6:60107..171054786 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 | copy number gain | not provided [RCV000745404] | Chr6:165632..170919470 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
NM_019096.5(GTPBP2):c.-5G>A | single nucleotide variant | not provided [RCV001692654] | Chr6:43629167 [GRCh38] Chr6:43596904 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.450C>T (p.Ser150=) | single nucleotide variant | not provided [RCV000970141] | Chr6:43625813 [GRCh38] Chr6:43593550 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.398+10C>G | single nucleotide variant | not provided [RCV000972426] | Chr6:43626216 [GRCh38] Chr6:43593953 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.1743C>T (p.Gly581=) | single nucleotide variant | not provided [RCV000971887] | Chr6:43621680 [GRCh38] Chr6:43589417 [GRCh37] Chr6:6p21.1 |
benign |
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) | copy number gain | not provided [RCV000767714] | Chr6:29455465..81447367 [GRCh37] Chr6:6p22.1-q14.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1236+1G>A | single nucleotide variant | Jaberi-Elahi syndrome [RCV000985150] | Chr6:43623932 [GRCh38] Chr6:43591669 [GRCh37] Chr6:6p21.1 |
likely pathogenic |
NM_019096.5(GTPBP2):c.1629C>G (p.Ala543=) | single nucleotide variant | not provided [RCV003116834] | Chr6:43622006 [GRCh38] Chr6:43589743 [GRCh37] Chr6:6p21.1 |
likely benign |
NC_000006.11:g.(?_42162409)_(44154249_?)del | deletion | not provided [RCV003107587] | Chr6:42162409..44154249 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.881-18G>A | single nucleotide variant | See cases [RCV002253105] | Chr6:43624747 [GRCh38] Chr6:43592484 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.213+200T>C | single nucleotide variant | not provided [RCV001720652] | Chr6:43626722 [GRCh38] Chr6:43594459 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.399-156A>G | single nucleotide variant | not provided [RCV001710461] | Chr6:43626020 [GRCh38] Chr6:43593757 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.1295+23C>T | single nucleotide variant | not provided [RCV001539549] | Chr6:43623714 [GRCh38] Chr6:43591451 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.1527_1528del (p.Glu509fs) | microsatellite | Jaberi-Elahi syndrome [RCV001251123] | Chr6:43622107..43622108 [GRCh38] Chr6:43589844..43589845 [GRCh37] Chr6:6p21.1 |
likely pathogenic |
NM_019096.5(GTPBP2):c.1467+106AC[2] | microsatellite | not provided [RCV001538727] | Chr6:43622522..43622523 [GRCh38] Chr6:43590259..43590260 [GRCh37] Chr6:6p21.1 |
benign |
NC_000006.11:g.(?_42928506)_(43737486_?)del | deletion | not provided [RCV001384708] | Chr6:42928506..43737486 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1429C>T (p.Leu477=) | single nucleotide variant | not provided [RCV001520394] | Chr6:43622671 [GRCh38] Chr6:43590408 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.398+63G>T | single nucleotide variant | not provided [RCV001538501] | Chr6:43626163 [GRCh38] Chr6:43593900 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.1761T>C (p.Asp587=) | single nucleotide variant | not provided [RCV001450690] | Chr6:43621662 [GRCh38] Chr6:43589399 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1101-183_1101-180del | deletion | not provided [RCV001685684] | Chr6:43624248..43624251 [GRCh38] Chr6:43591985..43591988 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.86G>C (p.Gly29Ala) | single nucleotide variant | not provided [RCV001515476] | Chr6:43629077 [GRCh38] Chr6:43596814 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.114dup (p.Pro39fs) | duplication | Jaberi-Elahi syndrome [RCV001782237] | Chr6:43629048..43629049 [GRCh38] Chr6:43596785..43596786 [GRCh37] Chr6:6p21.1 |
likely pathogenic |
NM_019096.5(GTPBP2):c.1187_1188insT (p.Asn397fs) | insertion | Jaberi-Elahi syndrome [RCV001782238] | Chr6:43623981..43623982 [GRCh38] Chr6:43591718..43591719 [GRCh37] Chr6:6p21.1 |
likely pathogenic |
NM_019096.5(GTPBP2):c.1053_1054del (p.Glu352fs) | deletion | Jaberi-Elahi syndrome [RCV001807965] | Chr6:43624556..43624557 [GRCh38] Chr6:43592293..43592294 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.92_93delinsAA (p.Gly31Glu) | indel | not provided [RCV001875222] | Chr6:43629070..43629071 [GRCh38] Chr6:43596807..43596808 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1512G>A (p.Ser504=) | single nucleotide variant | not provided [RCV002008221] | Chr6:43622123 [GRCh38] Chr6:43589860 [GRCh37] Chr6:6p21.1 |
likely benign|uncertain significance |
NM_019096.5(GTPBP2):c.301G>A (p.Val101Ile) | single nucleotide variant | not provided [RCV002020509] | Chr6:43626323 [GRCh38] Chr6:43594060 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.217A>G (p.Lys73Glu) | single nucleotide variant | not provided [RCV001896093] | Chr6:43626407 [GRCh38] Chr6:43594144 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.547T>G (p.Ser183Ala) | single nucleotide variant | not provided [RCV001987909] | Chr6:43625521 [GRCh38] Chr6:43593258 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.165C>A (p.Asn55Lys) | single nucleotide variant | Inborn genetic diseases [RCV002563478]|not provided [RCV001987940] | Chr6:43628998 [GRCh38] Chr6:43596735 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.179C>T (p.Pro60Leu) | single nucleotide variant | not provided [RCV001931619] | Chr6:43628984 [GRCh38] Chr6:43596721 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1667G>A (p.Arg556His) | single nucleotide variant | Inborn genetic diseases [RCV002550341]|not provided [RCV001907837] | Chr6:43621756 [GRCh38] Chr6:43589493 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1784A>C (p.Glu595Ala) | single nucleotide variant | not provided [RCV001964667] | Chr6:43621639 [GRCh38] Chr6:43589376 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.418G>A (p.Val140Ile) | single nucleotide variant | not provided [RCV001893323] | Chr6:43625845 [GRCh38] Chr6:43593582 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1757C>G (p.Thr586Ser) | single nucleotide variant | not provided [RCV001954882] | Chr6:43621666 [GRCh38] Chr6:43589403 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1650C>T (p.Gly550=) | single nucleotide variant | not provided [RCV001882025] | Chr6:43621773 [GRCh38] Chr6:43589510 [GRCh37] Chr6:6p21.1 |
likely benign|uncertain significance |
NM_019096.5(GTPBP2):c.520C>T (p.Arg174Cys) | single nucleotide variant | not provided [RCV001970760] | Chr6:43625548 [GRCh38] Chr6:43593285 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.290G>A (p.Arg97His) | single nucleotide variant | not provided [RCV001921478] | Chr6:43626334 [GRCh38] Chr6:43594071 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1526A>C (p.Glu509Ala) | single nucleotide variant | not provided [RCV001892375] | Chr6:43622109 [GRCh38] Chr6:43589846 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.705+9G>A | single nucleotide variant | not provided [RCV002081552] | Chr6:43625354 [GRCh38] Chr6:43593091 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.36C>T (p.Cys12=) | single nucleotide variant | not provided [RCV002212684] | Chr6:43629127 [GRCh38] Chr6:43596864 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1404G>A (p.Val468=) | single nucleotide variant | not provided [RCV002125006] | Chr6:43622696 [GRCh38] Chr6:43590433 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.846C>T (p.Cys282=) | single nucleotide variant | not provided [RCV002216963] | Chr6:43624922 [GRCh38] Chr6:43592659 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1206G>A (p.Glu402=) | single nucleotide variant | not provided [RCV002219658] | Chr6:43623963 [GRCh38] Chr6:43591700 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.909G>A (p.Leu303=) | single nucleotide variant | not provided [RCV002101996] | Chr6:43624701 [GRCh38] Chr6:43592438 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.213+11G>A | single nucleotide variant | not provided [RCV002178216] | Chr6:43626911 [GRCh38] Chr6:43594648 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.398+18C>T | single nucleotide variant | not provided [RCV002198144] | Chr6:43626208 [GRCh38] Chr6:43593945 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.507+13C>T | single nucleotide variant | not provided [RCV002075096] | Chr6:43625743 [GRCh38] Chr6:43593480 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1572G>A (p.Gln524=) | single nucleotide variant | not provided [RCV002160486] | Chr6:43622063 [GRCh38] Chr6:43589800 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1746C>T (p.Ile582=) | single nucleotide variant | not provided [RCV002163077] | Chr6:43621677 [GRCh38] Chr6:43589414 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.881-17C>T | single nucleotide variant | not provided [RCV002166410] | Chr6:43624746 [GRCh38] Chr6:43592483 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.399-13C>G | single nucleotide variant | not provided [RCV002137835] | Chr6:43625877 [GRCh38] Chr6:43593614 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.705+20C>T | single nucleotide variant | not provided [RCV002162172] | Chr6:43625343 [GRCh38] Chr6:43593080 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.880+11T>A | single nucleotide variant | not provided [RCV002081718] | Chr6:43624877 [GRCh38] Chr6:43592614 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.963T>C (p.Cys321=) | single nucleotide variant | not provided [RCV002197843] | Chr6:43624647 [GRCh38] Chr6:43592384 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.219G>A (p.Lys73=) | single nucleotide variant | not provided [RCV002197846] | Chr6:43626405 [GRCh38] Chr6:43594142 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1468-14C>T | single nucleotide variant | not provided [RCV002096258] | Chr6:43622181 [GRCh38] Chr6:43589918 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.516C>T (p.Asp172=) | single nucleotide variant | not provided [RCV002208411] | Chr6:43625552 [GRCh38] Chr6:43593289 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.60C>A (p.Ala20=) | single nucleotide variant | not provided [RCV002154622] | Chr6:43629103 [GRCh38] Chr6:43596840 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.62T>C (p.Val21Ala) | single nucleotide variant | not provided [RCV002220257] | Chr6:43629101 [GRCh38] Chr6:43596838 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.186+19G>A | single nucleotide variant | not provided [RCV002163494] | Chr6:43628958 [GRCh38] Chr6:43596695 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1719G>A (p.Leu573=) | single nucleotide variant | not provided [RCV002205912] | Chr6:43621704 [GRCh38] Chr6:43589441 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1179G>A (p.Pro393=) | single nucleotide variant | not provided [RCV002105463] | Chr6:43623990 [GRCh38] Chr6:43591727 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1698G>C (p.Leu566=) | single nucleotide variant | not provided [RCV002106683] | Chr6:43621725 [GRCh38] Chr6:43589462 [GRCh37] Chr6:6p21.1 |
likely benign |
NC_000006.11:g.(?_41126341)_(43752536_?)del | deletion | Peroxisome biogenesis disorder [RCV003110948] | Chr6:41126341..43752536 [GRCh37] Chr6:6p21.1 |
pathogenic |
NC_000006.11:g.(?_41126341)_(43737486_?)dup | duplication | PRPH2-Related Disorders [RCV003111022] | Chr6:41126341..43737486 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.93C>T (p.Gly31=) | single nucleotide variant | not provided [RCV002263409] | Chr6:43629070 [GRCh38] Chr6:43596807 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1558C>T (p.Arg520Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV002281893] | Chr6:43622077 [GRCh38] Chr6:43589814 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1632+3G>A | single nucleotide variant | not provided [RCV002858375] | Chr6:43622000 [GRCh38] Chr6:43589737 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.532C>T (p.Leu178=) | single nucleotide variant | not provided [RCV002819236] | Chr6:43625536 [GRCh38] Chr6:43593273 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.386G>A (p.Arg129Gln) | single nucleotide variant | Inborn genetic diseases [RCV002865898] | Chr6:43626238 [GRCh38] Chr6:43593975 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1672C>T (p.Arg558Cys) | single nucleotide variant | not provided [RCV002616658] | Chr6:43621751 [GRCh38] Chr6:43589488 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1509C>T (p.Cys503=) | single nucleotide variant | not provided [RCV002613654] | Chr6:43622126 [GRCh38] Chr6:43589863 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.858C>T (p.Leu286=) | single nucleotide variant | not provided [RCV003095648] | Chr6:43624910 [GRCh38] Chr6:43592647 [GRCh37] Chr6:6p21.1 |
likely benign |
GRCh37/hg19 6p21.1(chr6:43571555-44154599)x3 | copy number gain | not provided [RCV002475643] | Chr6:43571555..44154599 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.454A>G (p.Met152Val) | single nucleotide variant | not provided [RCV002970645] | Chr6:43625809 [GRCh38] Chr6:43593546 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.859G>C (p.Val287Leu) | single nucleotide variant | Inborn genetic diseases [RCV002799002] | Chr6:43624909 [GRCh38] Chr6:43592646 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1605G>A (p.Thr535=) | single nucleotide variant | not provided [RCV002590683] | Chr6:43622030 [GRCh38] Chr6:43589767 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.109G>T (p.Gly37Trp) | single nucleotide variant | Inborn genetic diseases [RCV002693805] | Chr6:43629054 [GRCh38] Chr6:43596791 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.52G>T (p.Gly18Cys) | single nucleotide variant | Inborn genetic diseases [RCV002703739] | Chr6:43629111 [GRCh38] Chr6:43596848 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1077C>T (p.Ala359=) | single nucleotide variant | not provided [RCV002636907] | Chr6:43624533 [GRCh38] Chr6:43592270 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1609G>C (p.Val537Leu) | single nucleotide variant | not provided [RCV002690906] | Chr6:43622026 [GRCh38] Chr6:43589763 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.27C>T (p.Phe9=) | single nucleotide variant | not provided [RCV002912680] | Chr6:43629136 [GRCh38] Chr6:43596873 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.507+17C>T | single nucleotide variant | not provided [RCV002870695] | Chr6:43625739 [GRCh38] Chr6:43593476 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.84G>A (p.Arg28=) | single nucleotide variant | not provided [RCV002659488] | Chr6:43629079 [GRCh38] Chr6:43596816 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.643A>G (p.Ile215Val) | single nucleotide variant | not provided [RCV003038604] | Chr6:43625425 [GRCh38] Chr6:43593162 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.369G>C (p.Ser123=) | single nucleotide variant | not provided [RCV002658716] | Chr6:43626255 [GRCh38] Chr6:43593992 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1434G>A (p.Ala478=) | single nucleotide variant | not provided [RCV002870876] | Chr6:43622666 [GRCh38] Chr6:43590403 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.67G>C (p.Gly23Arg) | single nucleotide variant | Inborn genetic diseases [RCV002693899] | Chr6:43629096 [GRCh38] Chr6:43596833 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1101-3C>T | single nucleotide variant | not provided [RCV002619679] | Chr6:43624071 [GRCh38] Chr6:43591808 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1606G>T (p.Ala536Ser) | single nucleotide variant | Inborn genetic diseases [RCV003079345]|not provided [RCV003079346] | Chr6:43622029 [GRCh38] Chr6:43589766 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1546G>A (p.Ala516Thr) | single nucleotide variant | Inborn genetic diseases [RCV002954781] | Chr6:43622089 [GRCh38] Chr6:43589826 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.471C>T (p.Thr157=) | single nucleotide variant | not provided [RCV002644369] | Chr6:43625792 [GRCh38] Chr6:43593529 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.881-12C>T | single nucleotide variant | not provided [RCV002790278] | Chr6:43624741 [GRCh38] Chr6:43592478 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.457C>T (p.Pro153Ser) | single nucleotide variant | not provided [RCV002574792] | Chr6:43625806 [GRCh38] Chr6:43593543 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.300C>T (p.Ala100=) | single nucleotide variant | not provided [RCV002572402] | Chr6:43626324 [GRCh38] Chr6:43594061 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.480A>G (p.Leu160=) | single nucleotide variant | not provided [RCV002914746] | Chr6:43625783 [GRCh38] Chr6:43593520 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.451G>A (p.Asp151Asn) | single nucleotide variant | not provided [RCV002875728] | Chr6:43625812 [GRCh38] Chr6:43593549 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.417C>T (p.Thr139=) | single nucleotide variant | not provided [RCV002700346] | Chr6:43625846 [GRCh38] Chr6:43593583 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.589dup (p.Leu197fs) | duplication | not provided [RCV002791274] | Chr6:43625478..43625479 [GRCh38] Chr6:43593215..43593216 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1146G>C (p.Leu382=) | single nucleotide variant | not provided [RCV002786739] | Chr6:43624023 [GRCh38] Chr6:43591760 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1578A>G (p.Thr526=) | single nucleotide variant | not provided [RCV002958202] | Chr6:43622057 [GRCh38] Chr6:43589794 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.77A>C (p.Lys26Thr) | single nucleotide variant | Inborn genetic diseases [RCV002698921] | Chr6:43629086 [GRCh38] Chr6:43596823 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.546C>T (p.Asp182=) | single nucleotide variant | not provided [RCV003044491] | Chr6:43625522 [GRCh38] Chr6:43593259 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1625A>G (p.His542Arg) | single nucleotide variant | Inborn genetic diseases [RCV002935674] | Chr6:43622010 [GRCh38] Chr6:43589747 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.359T>C (p.Met120Thr) | single nucleotide variant | Inborn genetic diseases [RCV002936539] | Chr6:43626265 [GRCh38] Chr6:43594002 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.129G>A (p.Lys43=) | single nucleotide variant | not provided [RCV002599794] | Chr6:43629034 [GRCh38] Chr6:43596771 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1650C>A (p.Gly550=) | single nucleotide variant | not provided [RCV003010108] | Chr6:43621773 [GRCh38] Chr6:43589510 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1182A>G (p.Pro394=) | single nucleotide variant | not provided [RCV002599592] | Chr6:43623987 [GRCh38] Chr6:43591724 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1468-19G>C | single nucleotide variant | not provided [RCV002646552] | Chr6:43622186 [GRCh38] Chr6:43589923 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1187C>T (p.Thr396Ile) | single nucleotide variant | not provided [RCV002959222] | Chr6:43623982 [GRCh38] Chr6:43591719 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.8C>A (p.Ser3Ter) | single nucleotide variant | Jaberi-Elahi syndrome [RCV002810018] | Chr6:43629155 [GRCh38] Chr6:43596892 [GRCh37] Chr6:6p21.1 |
pathogenic |
NM_019096.5(GTPBP2):c.1400G>C (p.Arg467Pro) | single nucleotide variant | Inborn genetic diseases [RCV002717844] | Chr6:43622700 [GRCh38] Chr6:43590437 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.841G>A (p.Asp281Asn) | single nucleotide variant | Inborn genetic diseases [RCV002835702] | Chr6:43624927 [GRCh38] Chr6:43592664 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.777C>T (p.Ile259=) | single nucleotide variant | not provided [RCV002577455] | Chr6:43624991 [GRCh38] Chr6:43592728 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1236+10T>G | single nucleotide variant | not provided [RCV002899513] | Chr6:43623923 [GRCh38] Chr6:43591660 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1779A>C (p.Ala593=) | single nucleotide variant | not provided [RCV002601508] | Chr6:43621644 [GRCh38] Chr6:43589381 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1673G>A (p.Arg558His) | single nucleotide variant | not provided [RCV002943448] | Chr6:43621750 [GRCh38] Chr6:43589487 [GRCh37] Chr6:6p21.1 |
benign |
NM_019096.5(GTPBP2):c.214-7C>T | single nucleotide variant | not provided [RCV002604165] | Chr6:43626417 [GRCh38] Chr6:43594154 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1548C>T (p.Ala516=) | single nucleotide variant | not provided [RCV003050712] | Chr6:43622087 [GRCh38] Chr6:43589824 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1295+14C>T | single nucleotide variant | not provided [RCV002603808] | Chr6:43623723 [GRCh38] Chr6:43591460 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.361C>G (p.Arg121Gly) | single nucleotide variant | Inborn genetic diseases [RCV002607554]|not provided [RCV002607553] | Chr6:43626263 [GRCh38] Chr6:43594000 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.13G>T (p.Val5Leu) | single nucleotide variant | Inborn genetic diseases [RCV002724232] | Chr6:43629150 [GRCh38] Chr6:43596887 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1003C>T (p.Arg335Trp) | single nucleotide variant | not provided [RCV002606787] | Chr6:43624607 [GRCh38] Chr6:43592344 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.1633-7G>A | single nucleotide variant | not provided [RCV002608976] | Chr6:43621797 [GRCh38] Chr6:43589534 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.1584C>T (p.His528=) | single nucleotide variant | not provided [RCV002582834] | Chr6:43622051 [GRCh38] Chr6:43589788 [GRCh37] Chr6:6p21.1 |
likely benign |
NM_019096.5(GTPBP2):c.445G>A (p.Asp149Asn) | single nucleotide variant | not provided [RCV002589558] | Chr6:43625818 [GRCh38] Chr6:43593555 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.939C>G (p.Ile313Met) | single nucleotide variant | Jaberi-Elahi syndrome [RCV003135494] | Chr6:43624671 [GRCh38] Chr6:43592408 [GRCh37] Chr6:6p21.1 |
uncertain significance |
NM_019096.5(GTPBP2):c.326A>G (p.Asn109Ser) | single nucleotide variant | Inborn genetic diseases [RCV003208092] | Chr6:43626298 [GRCh38] Chr6:43594035 [GRCh37] Chr6:6p21.1 |
uncertain significance |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
WI-20627 |
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D6S2189 |
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G20859 |
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A006I45 |
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RH46731 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 2425 | 2688 | 1554 | 458 | 1882 | 300 | 4215 | 1863 | 2404 | 359 | 1444 | 1605 | 171 | 1204 | 2649 | 3 | ||
Low | 14 | 300 | 172 | 165 | 68 | 165 | 142 | 333 | 1318 | 59 | 14 | 7 | 2 | 139 | 3 | 1 | ||
Below cutoff | 9 | 1 | 2 | 1 | 1 |
RefSeq Transcripts | NG_028283 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001286216 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_019096 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017010976 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_024446475 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_024446476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_024446477 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_024446478 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_047418938 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054355729 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054355730 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054355731 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054355732 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB024574 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF168990 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AJ420518 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK000430 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK290267 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL353602 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL834331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC020980 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC028347 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC032315 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC064968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BU736981 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471081 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CN263880 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CP068272 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENST00000307114 ⟹ ENSP00000304893 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000307126 ⟹ ENSP00000303997 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000419497 ⟹ ENSP00000392944 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000432918 ⟹ ENSP00000398905 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000442748 ⟹ ENSP00000411358 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000452781 ⟹ ENSP00000410676 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000459959 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000476510 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000480263 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENST00000496137 ⟹ ENSP00000436973 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001286216 ⟹ NP_001273145 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
|
||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | NM_019096 ⟹ NP_061969 | ||||||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_024446476 ⟹ XP_024302244 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
||||||||
Sequence: |
RefSeq Acc Id: | XM_024446477 ⟹ XP_024302245 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
||||||||
Sequence: |
RefSeq Acc Id: | XM_024446478 ⟹ XP_024302246 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
||||||||
Sequence: |
RefSeq Acc Id: | XM_047418938 ⟹ XP_047274894 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054355729 ⟹ XP_054211704 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054355730 ⟹ XP_054211705 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054355731 ⟹ XP_054211706 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_054355732 ⟹ XP_054211707 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001273145 | (Get FASTA) | NCBI Sequence Viewer |
NP_061969 | (Get FASTA) | NCBI Sequence Viewer | |
XP_024302244 | (Get FASTA) | NCBI Sequence Viewer | |
XP_024302245 | (Get FASTA) | NCBI Sequence Viewer | |
XP_024302246 | (Get FASTA) | NCBI Sequence Viewer | |
XP_047274894 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054211704 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054211705 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054211706 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054211707 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAF78884 | (Get FASTA) | NCBI Sequence Viewer |
AAH20980 | (Get FASTA) | NCBI Sequence Viewer | |
AAH28347 | (Get FASTA) | NCBI Sequence Viewer | |
AAH64968 | (Get FASTA) | NCBI Sequence Viewer | |
BAA91160 | (Get FASTA) | NCBI Sequence Viewer | |
BAB12431 | (Get FASTA) | NCBI Sequence Viewer | |
BAF82956 | (Get FASTA) | NCBI Sequence Viewer | |
CAD38999 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04213 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04214 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04215 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04216 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04217 | (Get FASTA) | NCBI Sequence Viewer | |
EAX04218 | (Get FASTA) | NCBI Sequence Viewer | |
Q9BX10 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_061969 ⟸ NM_019096 |
- Peptide Label: | isoform a |
- UniProtKB: | Q9NX60 (UniProtKB/Swiss-Prot), Q9BX10 (UniProtKB/Swiss-Prot), A0A024RD30 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001273145 ⟸ NM_001286216 |
- Peptide Label: | isoform b |
- UniProtKB: | Q9BX10 (UniProtKB/Swiss-Prot), A8K2K2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_024302244 ⟸ XM_024446476 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_024302246 ⟸ XM_024446478 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_024302245 ⟸ XM_024446477 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | ENSP00000303997 ⟸ ENST00000307126 |
RefSeq Acc Id: | ENSP00000304893 ⟸ ENST00000307114 |
RefSeq Acc Id: | ENSP00000410676 ⟸ ENST00000452781 |
RefSeq Acc Id: | ENSP00000411358 ⟸ ENST00000442748 |
RefSeq Acc Id: | ENSP00000436973 ⟸ ENST00000496137 |
RefSeq Acc Id: | ENSP00000392944 ⟸ ENST00000419497 |
RefSeq Acc Id: | ENSP00000398905 ⟸ ENST00000432918 |
RefSeq Acc Id: | XP_047274894 ⟸ XM_047418938 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054211704 ⟸ XM_054355729 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_054211705 ⟸ XM_054355730 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054211707 ⟸ XM_054355732 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_054211706 ⟸ XM_054355731 |
- Peptide Label: | isoform X3 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9BX10-F1-model_v2 | AlphaFold | Q9BX10 | 1-602 | view protein structure |
RGD ID: | 7208153 | ||||||||
Promoter ID: | EPDNEW_H9823 | ||||||||
Type: | initiation region | ||||||||
Name: | GTPBP2_1 | ||||||||
Description: | GTP binding protein 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H9825 EPDNEW_H9826 EPDNEW_H9833 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
|
RGD ID: | 7208157 | ||||||||
Promoter ID: | EPDNEW_H9825 | ||||||||
Type: | initiation region | ||||||||
Name: | GTPBP2_3 | ||||||||
Description: | GTP binding protein 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H9823 EPDNEW_H9826 EPDNEW_H9833 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
|
RGD ID: | 7208161 | ||||||||
Promoter ID: | EPDNEW_H9826 | ||||||||
Type: | initiation region | ||||||||
Name: | GTPBP2_2 | ||||||||
Description: | GTP binding protein 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H9823 EPDNEW_H9825 EPDNEW_H9833 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6804278 | ||||||||
Promoter ID: | HG_KWN:53667 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell_12Hour, HeLa_S3, K562, Lymphoblastoid | ||||||||
Transcripts: | OTTHUMT00000040671, OTTHUMT00000040672, OTTHUMT00000040673 | ||||||||
Position: |
|
RGD ID: | 6804279 | ||||||||
Promoter ID: | HG_KWN:53668 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | HeLa_S3, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | OTTHUMT00000040675, OTTHUMT00000040676 | ||||||||
Position: |
|
RGD ID: | 6804280 | ||||||||
Promoter ID: | HG_KWN:53669 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | HeLa_S3, K562, Lymphoblastoid | ||||||||
Transcripts: | ENST00000393882, OTTHUMT00000040678 | ||||||||
Position: |
|
RGD ID: | 6804276 | ||||||||
Promoter ID: | HG_KWN:53670 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | HeLa_S3, K562, Lymphoblastoid | ||||||||
Transcripts: | OTTHUMT00000040669, OTTHUMT00000040670, UC010JYV.1 | ||||||||
Position: |
|
RGD ID: | 6804429 | ||||||||
Promoter ID: | HG_KWN:53671 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | ENST00000307114, ENST00000372177, NM_001003690, NM_019096, OTTHUMT00000040674, OTTHUMT00000040677, UC003OVT.1 | ||||||||
Position: |
|
RGD ID: | 6812972 | ||||||||
Promoter ID: | HG_ACW:68546 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | K562 | ||||||||
Transcripts: | GTPBP2.KAPR07 | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | HGNC:4670 | AgrOrtholog |
COSMIC | GTPBP2 | COSMIC |
Ensembl Genes | ENSG00000172432 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSP00000303997 | ENTREZGENE |
ENSP00000303997.5 | UniProtKB/Swiss-Prot | |
ENSP00000304893 | ENTREZGENE | |
ENSP00000304893.7 | UniProtKB/Swiss-Prot | |
ENSP00000392944.1 | UniProtKB/TrEMBL | |
ENSP00000398905.1 | UniProtKB/TrEMBL | |
ENSP00000410676.1 | UniProtKB/TrEMBL | |
ENSP00000411358.1 | UniProtKB/TrEMBL | |
ENSP00000436973.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000307114 | ENTREZGENE |
ENST00000307114.11 | UniProtKB/Swiss-Prot | |
ENST00000307126 | ENTREZGENE | |
ENST00000307126.10 | UniProtKB/Swiss-Prot | |
ENST00000419497.5 | UniProtKB/TrEMBL | |
ENST00000432918.5 | UniProtKB/TrEMBL | |
ENST00000442748.5 | UniProtKB/TrEMBL | |
ENST00000452781.1 | UniProtKB/TrEMBL | |
ENST00000476510 | ENTREZGENE | |
ENST00000496137.5 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.40.50.300 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Translation factors | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GTEx | ENSG00000172432 | GTEx |
HGNC ID | HGNC:4670 | ENTREZGENE |
Human Proteome Map | GTPBP2 | Human Proteome Map |
InterPro | GTPBP1-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
P-loop_NTPase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TF_GTP-bd_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Transl_B-barrel_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Transl_elong_EF1A/Init_IF2_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:54676 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 54676 | ENTREZGENE |
OMIM | 607434 | OMIM |
PANTHER | ELONGATION FACTOR TU-RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GTP-BINDING PROTEIN 2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | GTP_EFTU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA29058 | PharmGKB |
PROSITE | G_TR_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF50447 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF50465 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF52540 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A024RD30 | ENTREZGENE, UniProtKB/TrEMBL |
A8K2K2 | ENTREZGENE, UniProtKB/TrEMBL | |
GTPB2_HUMAN | UniProtKB/Swiss-Prot | |
H0Y4M5_HUMAN | UniProtKB/TrEMBL | |
H0Y5J1_HUMAN | UniProtKB/TrEMBL | |
H0Y7A5_HUMAN | UniProtKB/TrEMBL | |
H0YF05_HUMAN | UniProtKB/TrEMBL | |
Q9BX10 | ENTREZGENE | |
Q9NX60 | ENTREZGENE | |
X6RJ09_HUMAN | UniProtKB/TrEMBL | |
UniProt Secondary | Q5T7E8 | UniProtKB/Swiss-Prot |
Q8ND84 | UniProtKB/Swiss-Prot | |
Q8TAH7 | UniProtKB/Swiss-Prot | |
Q8WUA5 | UniProtKB/Swiss-Prot | |
Q9HCS9 | UniProtKB/Swiss-Prot | |
Q9NRU4 | UniProtKB/Swiss-Prot | |
Q9NX60 | UniProtKB/Swiss-Prot |