GTPBP2 (GTP binding protein 2) - Rat Genome Database

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Gene: GTPBP2 (GTP binding protein 2) Homo sapiens
Analyze
Symbol: GTPBP2
Name: GTP binding protein 2
RGD ID: 1314943
HGNC Page HGNC:4670
Description: Enables identical protein binding activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, no-go decay and rescue of stalled ribosome. Predicted to be located in extracellular region and platelet alpha granule lumen.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GTP-binding protein 2; JABELS; MGC74725
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,620,494 - 43,631,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl643,605,316 - 43,629,264 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,588,231 - 43,597,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,696,196 - 43,704,914 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,696,195 - 43,704,914NCBI
Celera645,139,839 - 45,148,557 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,307,393 - 43,316,111 (-)NCBIHuRef
CHM1_1643,591,281 - 43,599,999 (-)NCBICHM1_1
T2T-CHM13v2.0643,449,227 - 43,460,058 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (EXP)
3',5'-cyclic AMP  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
5-aza-2'-deoxycytidine  (EXP)
acetylsalicylic acid  (EXP)
acrolein  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
aristolochic acid A  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bicalutamide  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (EXP)
C60 fullerene  (ISO)
carbamazepine  (EXP)
celastrol  (EXP)
chromium(6+)  (ISO)
cisplatin  (EXP)
clofibrate  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (EXP)
cyclosporin A  (EXP,ISO)
diclofenac  (ISO)
doxorubicin  (EXP)
endosulfan  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
fipronil  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
gedunin  (EXP)
genistein  (ISO)
gentamycin  (ISO)
hydrogen chloride  (EXP)
hydrogen cyanide  (ISO)
hydroquinone  (EXP)
lucanthone  (EXP)
methapyrilene  (ISO)
methotrexate  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-methylformamide  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
pentanal  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (EXP)
potassium cyanide  (ISO)
rac-lactic acid  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
trichostatin A  (EXP)
trovafloxacin  (ISO)
tunicamycin  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10833435   PMID:11054535   PMID:12477932   PMID:14574404   PMID:14702039   PMID:15146197   PMID:15489334   PMID:21873635   PMID:21903422   PMID:23455924   PMID:24778252  
PMID:26186194   PMID:26496610   PMID:26675814   PMID:28514442   PMID:29449720   PMID:30108131   PMID:30790272   PMID:31091453   PMID:31343991   PMID:31753913   PMID:32296183   PMID:32513696  
PMID:32694731   PMID:33961781   PMID:35007762   PMID:35013218   PMID:35509820   PMID:35559673   PMID:35563538   PMID:35844135  


Genomics

Comparative Map Data
GTPBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,620,494 - 43,631,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl643,605,316 - 43,629,264 (-)EnsemblGRCh38hg38GRCh38
GRCh37643,588,231 - 43,597,001 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,696,196 - 43,704,914 (-)NCBINCBI36Build 36hg18NCBI36
Build 34643,696,195 - 43,704,914NCBI
Celera645,139,839 - 45,148,557 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,307,393 - 43,316,111 (-)NCBIHuRef
CHM1_1643,591,281 - 43,599,999 (-)NCBICHM1_1
T2T-CHM13v2.0643,449,227 - 43,460,058 (-)NCBIT2T-CHM13v2.0
Gtpbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,470,153 - 46,480,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,471,958 - 46,480,296 (+)EnsemblGRCm39 Ensembl
GRCm381746,159,227 - 46,169,370 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,161,032 - 46,169,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv371746,297,981 - 46,306,319 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,624,652 - 45,632,949 (+)NCBIMGSCv36mm8
Celera1749,592,493 - 49,600,833 (+)NCBICelera
Cytogenetic Map17CNCBI
Gtpbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2914,813,964 - 14,823,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,813,964 - 14,823,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,398,503 - 23,406,541 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0928,461,081 - 28,469,121 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0926,761,927 - 26,769,965 (-)NCBIRnor_WKY
Rnor_6.0917,198,957 - 17,208,456 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,198,957 - 17,209,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,095,446 - 16,104,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,377,808 - 10,385,845 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,375,131 - 10,384,425 (-)NCBI
Celera912,561,278 - 12,569,316 (-)NCBICelera
Cytogenetic Map9q12NCBI
Gtpbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,412,934 - 9,424,365 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,414,128 - 9,425,671 (-)NCBIChiLan1.0ChiLan1.0
GTPBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1653,988,453 - 53,997,156 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,210,517 - 43,219,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,500,581 - 44,509,303 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,500,159 - 44,511,300 (-)Ensemblpanpan1.1panPan2
GTPBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,073,233 - 12,082,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,074,264 - 12,080,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,063,741 - 12,107,420 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,520,899 - 12,564,921 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,557,235 - 12,564,888 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,046,366 - 12,090,006 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,132,509 - 12,177,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,226,883 - 12,270,550 (-)NCBIUU_Cfam_GSD_1.0
Gtpbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,562,610 - 47,572,009 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,389,639 - 16,397,603 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647616,389,659 - 16,397,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTPBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,603,474 - 38,613,647 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,598,763 - 38,613,217 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,185,990 - 44,197,077 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTPBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,533,531 - 28,544,055 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,535,410 - 28,542,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,673,684 - 43,682,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtpbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,053,822 - 16,060,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,052,001 - 16,060,925 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GTPBP2
121 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_019096.5(GTPBP2):c.1219C>T (p.Gln407Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV000655891] Chr6:43623950 [GRCh38]
Chr6:43591687 [GRCh37]
Chr6:6p21.1
pathogenic
GRCh38/hg38 6p21.1(chr6:42368558-44590544)x1 copy number loss See cases [RCV000051011] Chr6:42368558..44590544 [GRCh38]
Chr6:42336296..44558281 [GRCh37]
Chr6:42444274..44666259 [NCBI36]
Chr6:6p21.1
pathogenic
GRCh38/hg38 6p21.1(chr6:42133625-44106194)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051899]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051899]|See cases [RCV000051899] Chr6:42133625..44106194 [GRCh38]
Chr6:42101363..44073931 [GRCh37]
Chr6:42209341..44181909 [NCBI36]
Chr6:6p21.1
pathogenic
GRCh38/hg38 6p21.2-21.1(chr6:37777369-45653843)x1 copy number loss See cases [RCV000052181] Chr6:37777369..45653843 [GRCh38]
Chr6:37745145..45621580 [GRCh37]
Chr6:37853123..45729558 [NCBI36]
Chr6:6p21.2-21.1
pathogenic
GRCh38/hg38 6p21.1-12.3(chr6:41638061-46512949)x1 copy number loss See cases [RCV000052182] Chr6:41638061..46512949 [GRCh38]
Chr6:41605799..46480686 [GRCh37]
Chr6:41713777..46588645 [NCBI36]
Chr6:6p21.1-12.3
pathogenic
NM_019096.4(GTPBP2):c.1397G>C (p.Cys466Ser) single nucleotide variant Malignant melanoma [RCV000061437] Chr6:43622703 [GRCh38]
Chr6:43590440 [GRCh37]
Chr6:43698418 [NCBI36]
Chr6:6p21.1
not provided
GRCh38/hg38 6p21.1(chr6:43537357-43784452)x3 copy number gain See cases [RCV000138182] Chr6:43537357..43784452 [GRCh38]
Chr6:43505094..43752189 [GRCh37]
Chr6:43613072..43860167 [NCBI36]
Chr6:6p21.1
uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
NM_019096.5(GTPBP2):c.655C>T (p.Arg219Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV002281894] Chr6:43625413 [GRCh38]
Chr6:43593150 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.1237-1G>T single nucleotide variant Jaberi-Elahi syndrome [RCV000655889] Chr6:43623796 [GRCh38]
Chr6:43591533 [GRCh37]
Chr6:6p21.1
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_019096.5(GTPBP2):c.1408C>T (p.Arg470Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV000655892] Chr6:43622692 [GRCh38]
Chr6:43590429 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.430C>T (p.Arg144Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV000655890] Chr6:43625833 [GRCh38]
Chr6:43593570 [GRCh37]
Chr6:6p21.1
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_019096.5(GTPBP2):c.-5G>A single nucleotide variant not provided [RCV001692654] Chr6:43629167 [GRCh38]
Chr6:43596904 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.450C>T (p.Ser150=) single nucleotide variant not provided [RCV000970141] Chr6:43625813 [GRCh38]
Chr6:43593550 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.398+10C>G single nucleotide variant not provided [RCV000972426] Chr6:43626216 [GRCh38]
Chr6:43593953 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.1743C>T (p.Gly581=) single nucleotide variant not provided [RCV000971887] Chr6:43621680 [GRCh38]
Chr6:43589417 [GRCh37]
Chr6:6p21.1
benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
NM_019096.5(GTPBP2):c.1236+1G>A single nucleotide variant Jaberi-Elahi syndrome [RCV000985150] Chr6:43623932 [GRCh38]
Chr6:43591669 [GRCh37]
Chr6:6p21.1
likely pathogenic
NM_019096.5(GTPBP2):c.1629C>G (p.Ala543=) single nucleotide variant not provided [RCV003116834] Chr6:43622006 [GRCh38]
Chr6:43589743 [GRCh37]
Chr6:6p21.1
likely benign
NC_000006.11:g.(?_42162409)_(44154249_?)del deletion not provided [RCV003107587] Chr6:42162409..44154249 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.881-18G>A single nucleotide variant See cases [RCV002253105] Chr6:43624747 [GRCh38]
Chr6:43592484 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.213+200T>C single nucleotide variant not provided [RCV001720652] Chr6:43626722 [GRCh38]
Chr6:43594459 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.399-156A>G single nucleotide variant not provided [RCV001710461] Chr6:43626020 [GRCh38]
Chr6:43593757 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.1295+23C>T single nucleotide variant not provided [RCV001539549] Chr6:43623714 [GRCh38]
Chr6:43591451 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.1527_1528del (p.Glu509fs) microsatellite Jaberi-Elahi syndrome [RCV001251123] Chr6:43622107..43622108 [GRCh38]
Chr6:43589844..43589845 [GRCh37]
Chr6:6p21.1
likely pathogenic
NM_019096.5(GTPBP2):c.1467+106AC[2] microsatellite not provided [RCV001538727] Chr6:43622522..43622523 [GRCh38]
Chr6:43590259..43590260 [GRCh37]
Chr6:6p21.1
benign
NC_000006.11:g.(?_42928506)_(43737486_?)del deletion not provided [RCV001384708] Chr6:42928506..43737486 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.1429C>T (p.Leu477=) single nucleotide variant not provided [RCV001520394] Chr6:43622671 [GRCh38]
Chr6:43590408 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.398+63G>T single nucleotide variant not provided [RCV001538501] Chr6:43626163 [GRCh38]
Chr6:43593900 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.1761T>C (p.Asp587=) single nucleotide variant not provided [RCV001450690] Chr6:43621662 [GRCh38]
Chr6:43589399 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1101-183_1101-180del deletion not provided [RCV001685684] Chr6:43624248..43624251 [GRCh38]
Chr6:43591985..43591988 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.86G>C (p.Gly29Ala) single nucleotide variant not provided [RCV001515476] Chr6:43629077 [GRCh38]
Chr6:43596814 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.114dup (p.Pro39fs) duplication Jaberi-Elahi syndrome [RCV001782237] Chr6:43629048..43629049 [GRCh38]
Chr6:43596785..43596786 [GRCh37]
Chr6:6p21.1
likely pathogenic
NM_019096.5(GTPBP2):c.1187_1188insT (p.Asn397fs) insertion Jaberi-Elahi syndrome [RCV001782238] Chr6:43623981..43623982 [GRCh38]
Chr6:43591718..43591719 [GRCh37]
Chr6:6p21.1
likely pathogenic
NM_019096.5(GTPBP2):c.1053_1054del (p.Glu352fs) deletion Jaberi-Elahi syndrome [RCV001807965] Chr6:43624556..43624557 [GRCh38]
Chr6:43592293..43592294 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.92_93delinsAA (p.Gly31Glu) indel not provided [RCV001875222] Chr6:43629070..43629071 [GRCh38]
Chr6:43596807..43596808 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1512G>A (p.Ser504=) single nucleotide variant not provided [RCV002008221] Chr6:43622123 [GRCh38]
Chr6:43589860 [GRCh37]
Chr6:6p21.1
likely benign|uncertain significance
NM_019096.5(GTPBP2):c.301G>A (p.Val101Ile) single nucleotide variant not provided [RCV002020509] Chr6:43626323 [GRCh38]
Chr6:43594060 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.217A>G (p.Lys73Glu) single nucleotide variant not provided [RCV001896093] Chr6:43626407 [GRCh38]
Chr6:43594144 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.547T>G (p.Ser183Ala) single nucleotide variant not provided [RCV001987909] Chr6:43625521 [GRCh38]
Chr6:43593258 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.165C>A (p.Asn55Lys) single nucleotide variant Inborn genetic diseases [RCV002563478]|not provided [RCV001987940] Chr6:43628998 [GRCh38]
Chr6:43596735 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.179C>T (p.Pro60Leu) single nucleotide variant not provided [RCV001931619] Chr6:43628984 [GRCh38]
Chr6:43596721 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1667G>A (p.Arg556His) single nucleotide variant Inborn genetic diseases [RCV002550341]|not provided [RCV001907837] Chr6:43621756 [GRCh38]
Chr6:43589493 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1784A>C (p.Glu595Ala) single nucleotide variant not provided [RCV001964667] Chr6:43621639 [GRCh38]
Chr6:43589376 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.418G>A (p.Val140Ile) single nucleotide variant not provided [RCV001893323] Chr6:43625845 [GRCh38]
Chr6:43593582 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1757C>G (p.Thr586Ser) single nucleotide variant not provided [RCV001954882] Chr6:43621666 [GRCh38]
Chr6:43589403 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1650C>T (p.Gly550=) single nucleotide variant not provided [RCV001882025] Chr6:43621773 [GRCh38]
Chr6:43589510 [GRCh37]
Chr6:6p21.1
likely benign|uncertain significance
NM_019096.5(GTPBP2):c.520C>T (p.Arg174Cys) single nucleotide variant not provided [RCV001970760] Chr6:43625548 [GRCh38]
Chr6:43593285 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.290G>A (p.Arg97His) single nucleotide variant not provided [RCV001921478] Chr6:43626334 [GRCh38]
Chr6:43594071 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1526A>C (p.Glu509Ala) single nucleotide variant not provided [RCV001892375] Chr6:43622109 [GRCh38]
Chr6:43589846 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.705+9G>A single nucleotide variant not provided [RCV002081552] Chr6:43625354 [GRCh38]
Chr6:43593091 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.36C>T (p.Cys12=) single nucleotide variant not provided [RCV002212684] Chr6:43629127 [GRCh38]
Chr6:43596864 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1404G>A (p.Val468=) single nucleotide variant not provided [RCV002125006] Chr6:43622696 [GRCh38]
Chr6:43590433 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.846C>T (p.Cys282=) single nucleotide variant not provided [RCV002216963] Chr6:43624922 [GRCh38]
Chr6:43592659 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1206G>A (p.Glu402=) single nucleotide variant not provided [RCV002219658] Chr6:43623963 [GRCh38]
Chr6:43591700 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.909G>A (p.Leu303=) single nucleotide variant not provided [RCV002101996] Chr6:43624701 [GRCh38]
Chr6:43592438 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.213+11G>A single nucleotide variant not provided [RCV002178216] Chr6:43626911 [GRCh38]
Chr6:43594648 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.398+18C>T single nucleotide variant not provided [RCV002198144] Chr6:43626208 [GRCh38]
Chr6:43593945 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.507+13C>T single nucleotide variant not provided [RCV002075096] Chr6:43625743 [GRCh38]
Chr6:43593480 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1572G>A (p.Gln524=) single nucleotide variant not provided [RCV002160486] Chr6:43622063 [GRCh38]
Chr6:43589800 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1746C>T (p.Ile582=) single nucleotide variant not provided [RCV002163077] Chr6:43621677 [GRCh38]
Chr6:43589414 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.881-17C>T single nucleotide variant not provided [RCV002166410] Chr6:43624746 [GRCh38]
Chr6:43592483 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.399-13C>G single nucleotide variant not provided [RCV002137835] Chr6:43625877 [GRCh38]
Chr6:43593614 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.705+20C>T single nucleotide variant not provided [RCV002162172] Chr6:43625343 [GRCh38]
Chr6:43593080 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.880+11T>A single nucleotide variant not provided [RCV002081718] Chr6:43624877 [GRCh38]
Chr6:43592614 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.963T>C (p.Cys321=) single nucleotide variant not provided [RCV002197843] Chr6:43624647 [GRCh38]
Chr6:43592384 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.219G>A (p.Lys73=) single nucleotide variant not provided [RCV002197846] Chr6:43626405 [GRCh38]
Chr6:43594142 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1468-14C>T single nucleotide variant not provided [RCV002096258] Chr6:43622181 [GRCh38]
Chr6:43589918 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.516C>T (p.Asp172=) single nucleotide variant not provided [RCV002208411] Chr6:43625552 [GRCh38]
Chr6:43593289 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.60C>A (p.Ala20=) single nucleotide variant not provided [RCV002154622] Chr6:43629103 [GRCh38]
Chr6:43596840 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.62T>C (p.Val21Ala) single nucleotide variant not provided [RCV002220257] Chr6:43629101 [GRCh38]
Chr6:43596838 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.186+19G>A single nucleotide variant not provided [RCV002163494] Chr6:43628958 [GRCh38]
Chr6:43596695 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1719G>A (p.Leu573=) single nucleotide variant not provided [RCV002205912] Chr6:43621704 [GRCh38]
Chr6:43589441 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1179G>A (p.Pro393=) single nucleotide variant not provided [RCV002105463] Chr6:43623990 [GRCh38]
Chr6:43591727 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1698G>C (p.Leu566=) single nucleotide variant not provided [RCV002106683] Chr6:43621725 [GRCh38]
Chr6:43589462 [GRCh37]
Chr6:6p21.1
likely benign
NC_000006.11:g.(?_41126341)_(43752536_?)del deletion Peroxisome biogenesis disorder [RCV003110948] Chr6:41126341..43752536 [GRCh37]
Chr6:6p21.1
pathogenic
NC_000006.11:g.(?_41126341)_(43737486_?)dup duplication PRPH2-Related Disorders [RCV003111022] Chr6:41126341..43737486 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.93C>T (p.Gly31=) single nucleotide variant not provided [RCV002263409] Chr6:43629070 [GRCh38]
Chr6:43596807 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1558C>T (p.Arg520Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV002281893] Chr6:43622077 [GRCh38]
Chr6:43589814 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.1632+3G>A single nucleotide variant not provided [RCV002858375] Chr6:43622000 [GRCh38]
Chr6:43589737 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.532C>T (p.Leu178=) single nucleotide variant not provided [RCV002819236] Chr6:43625536 [GRCh38]
Chr6:43593273 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.386G>A (p.Arg129Gln) single nucleotide variant Inborn genetic diseases [RCV002865898] Chr6:43626238 [GRCh38]
Chr6:43593975 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1672C>T (p.Arg558Cys) single nucleotide variant not provided [RCV002616658] Chr6:43621751 [GRCh38]
Chr6:43589488 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1509C>T (p.Cys503=) single nucleotide variant not provided [RCV002613654] Chr6:43622126 [GRCh38]
Chr6:43589863 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.858C>T (p.Leu286=) single nucleotide variant not provided [RCV003095648] Chr6:43624910 [GRCh38]
Chr6:43592647 [GRCh37]
Chr6:6p21.1
likely benign
GRCh37/hg19 6p21.1(chr6:43571555-44154599)x3 copy number gain not provided [RCV002475643] Chr6:43571555..44154599 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.454A>G (p.Met152Val) single nucleotide variant not provided [RCV002970645] Chr6:43625809 [GRCh38]
Chr6:43593546 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.859G>C (p.Val287Leu) single nucleotide variant Inborn genetic diseases [RCV002799002] Chr6:43624909 [GRCh38]
Chr6:43592646 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1605G>A (p.Thr535=) single nucleotide variant not provided [RCV002590683] Chr6:43622030 [GRCh38]
Chr6:43589767 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.109G>T (p.Gly37Trp) single nucleotide variant Inborn genetic diseases [RCV002693805] Chr6:43629054 [GRCh38]
Chr6:43596791 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.52G>T (p.Gly18Cys) single nucleotide variant Inborn genetic diseases [RCV002703739] Chr6:43629111 [GRCh38]
Chr6:43596848 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1077C>T (p.Ala359=) single nucleotide variant not provided [RCV002636907] Chr6:43624533 [GRCh38]
Chr6:43592270 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1609G>C (p.Val537Leu) single nucleotide variant not provided [RCV002690906] Chr6:43622026 [GRCh38]
Chr6:43589763 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.27C>T (p.Phe9=) single nucleotide variant not provided [RCV002912680] Chr6:43629136 [GRCh38]
Chr6:43596873 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.507+17C>T single nucleotide variant not provided [RCV002870695] Chr6:43625739 [GRCh38]
Chr6:43593476 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.84G>A (p.Arg28=) single nucleotide variant not provided [RCV002659488] Chr6:43629079 [GRCh38]
Chr6:43596816 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.643A>G (p.Ile215Val) single nucleotide variant not provided [RCV003038604] Chr6:43625425 [GRCh38]
Chr6:43593162 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.369G>C (p.Ser123=) single nucleotide variant not provided [RCV002658716] Chr6:43626255 [GRCh38]
Chr6:43593992 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1434G>A (p.Ala478=) single nucleotide variant not provided [RCV002870876] Chr6:43622666 [GRCh38]
Chr6:43590403 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.67G>C (p.Gly23Arg) single nucleotide variant Inborn genetic diseases [RCV002693899] Chr6:43629096 [GRCh38]
Chr6:43596833 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1101-3C>T single nucleotide variant not provided [RCV002619679] Chr6:43624071 [GRCh38]
Chr6:43591808 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1606G>T (p.Ala536Ser) single nucleotide variant Inborn genetic diseases [RCV003079345]|not provided [RCV003079346] Chr6:43622029 [GRCh38]
Chr6:43589766 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1546G>A (p.Ala516Thr) single nucleotide variant Inborn genetic diseases [RCV002954781] Chr6:43622089 [GRCh38]
Chr6:43589826 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.471C>T (p.Thr157=) single nucleotide variant not provided [RCV002644369] Chr6:43625792 [GRCh38]
Chr6:43593529 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.881-12C>T single nucleotide variant not provided [RCV002790278] Chr6:43624741 [GRCh38]
Chr6:43592478 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.457C>T (p.Pro153Ser) single nucleotide variant not provided [RCV002574792] Chr6:43625806 [GRCh38]
Chr6:43593543 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.300C>T (p.Ala100=) single nucleotide variant not provided [RCV002572402] Chr6:43626324 [GRCh38]
Chr6:43594061 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.480A>G (p.Leu160=) single nucleotide variant not provided [RCV002914746] Chr6:43625783 [GRCh38]
Chr6:43593520 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.451G>A (p.Asp151Asn) single nucleotide variant not provided [RCV002875728] Chr6:43625812 [GRCh38]
Chr6:43593549 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.417C>T (p.Thr139=) single nucleotide variant not provided [RCV002700346] Chr6:43625846 [GRCh38]
Chr6:43593583 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.589dup (p.Leu197fs) duplication not provided [RCV002791274] Chr6:43625478..43625479 [GRCh38]
Chr6:43593215..43593216 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.1146G>C (p.Leu382=) single nucleotide variant not provided [RCV002786739] Chr6:43624023 [GRCh38]
Chr6:43591760 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1578A>G (p.Thr526=) single nucleotide variant not provided [RCV002958202] Chr6:43622057 [GRCh38]
Chr6:43589794 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.77A>C (p.Lys26Thr) single nucleotide variant Inborn genetic diseases [RCV002698921] Chr6:43629086 [GRCh38]
Chr6:43596823 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.546C>T (p.Asp182=) single nucleotide variant not provided [RCV003044491] Chr6:43625522 [GRCh38]
Chr6:43593259 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1625A>G (p.His542Arg) single nucleotide variant Inborn genetic diseases [RCV002935674] Chr6:43622010 [GRCh38]
Chr6:43589747 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.359T>C (p.Met120Thr) single nucleotide variant Inborn genetic diseases [RCV002936539] Chr6:43626265 [GRCh38]
Chr6:43594002 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.129G>A (p.Lys43=) single nucleotide variant not provided [RCV002599794] Chr6:43629034 [GRCh38]
Chr6:43596771 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1650C>A (p.Gly550=) single nucleotide variant not provided [RCV003010108] Chr6:43621773 [GRCh38]
Chr6:43589510 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1182A>G (p.Pro394=) single nucleotide variant not provided [RCV002599592] Chr6:43623987 [GRCh38]
Chr6:43591724 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1468-19G>C single nucleotide variant not provided [RCV002646552] Chr6:43622186 [GRCh38]
Chr6:43589923 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1187C>T (p.Thr396Ile) single nucleotide variant not provided [RCV002959222] Chr6:43623982 [GRCh38]
Chr6:43591719 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.8C>A (p.Ser3Ter) single nucleotide variant Jaberi-Elahi syndrome [RCV002810018] Chr6:43629155 [GRCh38]
Chr6:43596892 [GRCh37]
Chr6:6p21.1
pathogenic
NM_019096.5(GTPBP2):c.1400G>C (p.Arg467Pro) single nucleotide variant Inborn genetic diseases [RCV002717844] Chr6:43622700 [GRCh38]
Chr6:43590437 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.841G>A (p.Asp281Asn) single nucleotide variant Inborn genetic diseases [RCV002835702] Chr6:43624927 [GRCh38]
Chr6:43592664 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.777C>T (p.Ile259=) single nucleotide variant not provided [RCV002577455] Chr6:43624991 [GRCh38]
Chr6:43592728 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1236+10T>G single nucleotide variant not provided [RCV002899513] Chr6:43623923 [GRCh38]
Chr6:43591660 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1779A>C (p.Ala593=) single nucleotide variant not provided [RCV002601508] Chr6:43621644 [GRCh38]
Chr6:43589381 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1673G>A (p.Arg558His) single nucleotide variant not provided [RCV002943448] Chr6:43621750 [GRCh38]
Chr6:43589487 [GRCh37]
Chr6:6p21.1
benign
NM_019096.5(GTPBP2):c.214-7C>T single nucleotide variant not provided [RCV002604165] Chr6:43626417 [GRCh38]
Chr6:43594154 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1548C>T (p.Ala516=) single nucleotide variant not provided [RCV003050712] Chr6:43622087 [GRCh38]
Chr6:43589824 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1295+14C>T single nucleotide variant not provided [RCV002603808] Chr6:43623723 [GRCh38]
Chr6:43591460 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.361C>G (p.Arg121Gly) single nucleotide variant Inborn genetic diseases [RCV002607554]|not provided [RCV002607553] Chr6:43626263 [GRCh38]
Chr6:43594000 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.13G>T (p.Val5Leu) single nucleotide variant Inborn genetic diseases [RCV002724232] Chr6:43629150 [GRCh38]
Chr6:43596887 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1003C>T (p.Arg335Trp) single nucleotide variant not provided [RCV002606787] Chr6:43624607 [GRCh38]
Chr6:43592344 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.1633-7G>A single nucleotide variant not provided [RCV002608976] Chr6:43621797 [GRCh38]
Chr6:43589534 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.1584C>T (p.His528=) single nucleotide variant not provided [RCV002582834] Chr6:43622051 [GRCh38]
Chr6:43589788 [GRCh37]
Chr6:6p21.1
likely benign
NM_019096.5(GTPBP2):c.445G>A (p.Asp149Asn) single nucleotide variant not provided [RCV002589558] Chr6:43625818 [GRCh38]
Chr6:43593555 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.939C>G (p.Ile313Met) single nucleotide variant Jaberi-Elahi syndrome [RCV003135494] Chr6:43624671 [GRCh38]
Chr6:43592408 [GRCh37]
Chr6:6p21.1
uncertain significance
NM_019096.5(GTPBP2):c.326A>G (p.Asn109Ser) single nucleotide variant Inborn genetic diseases [RCV003208092] Chr6:43626298 [GRCh38]
Chr6:43594035 [GRCh37]
Chr6:6p21.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3422
Count of miRNA genes:938
Interacting mature miRNAs:1154
Transcripts:ENST00000307114, ENST00000307126, ENST00000419497, ENST00000432918, ENST00000442748, ENST00000452781, ENST00000459959, ENST00000476510, ENST00000480263, ENST00000496137
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
WI-20627  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37643,588,326 - 43,588,552UniSTSGRCh37
Build 36643,696,304 - 43,696,530RGDNCBI36
Celera645,139,947 - 45,140,173RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef643,307,501 - 43,307,727UniSTS
GeneMap99-GB4 RH Map6149.3UniSTS
Whitehead-RH Map6247.6UniSTS
NCBI RH Map6663.5UniSTS
D6S2189  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37643,588,326 - 43,588,458UniSTSGRCh37
Build 36643,696,304 - 43,696,436RGDNCBI36
Celera645,139,947 - 45,140,079RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef643,307,501 - 43,307,633UniSTS
Stanford-G3 RH Map62435.0UniSTS
NCBI RH Map6659.8UniSTS
GeneMap99-G3 RH Map62567.0UniSTS
G20859  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37643,588,298 - 43,588,471UniSTSGRCh37
Build 36643,696,276 - 43,696,449RGDNCBI36
Celera645,139,919 - 45,140,092RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef643,307,473 - 43,307,646UniSTS
A006I45  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37643,588,298 - 43,588,471UniSTSGRCh37
Build 36643,696,276 - 43,696,449RGDNCBI36
Celera645,139,919 - 45,140,092RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef643,307,473 - 43,307,646UniSTS
GeneMap99-GB4 RH Map6165.72UniSTS
RH46731  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37643,588,346 - 43,588,518UniSTSGRCh37
Build 36643,696,324 - 43,696,496RGDNCBI36
Celera645,139,967 - 45,140,139RGD
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p21UniSTS
HuRef643,307,521 - 43,307,693UniSTS
GeneMap99-GB4 RH Map6153.36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2425 2688 1554 458 1882 300 4215 1863 2404 359 1444 1605 171 1204 2649 3
Low 14 300 172 165 68 165 142 333 1318 59 14 7 2 139 3 1
Below cutoff 9 1 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017010976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054355729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054355730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054355731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054355732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB024574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF168990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ420518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL353602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU736981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN263880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000307114   ⟹   ENSP00000304893
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,620,482 - 43,627,353 (-)Ensembl
RefSeq Acc Id: ENST00000307126   ⟹   ENSP00000303997
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,620,494 - 43,629,264 (-)Ensembl
RefSeq Acc Id: ENST00000419497   ⟹   ENSP00000392944
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,620,490 - 43,622,804 (-)Ensembl
RefSeq Acc Id: ENST00000432918   ⟹   ENSP00000398905
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,620,490 - 43,622,804 (-)Ensembl
RefSeq Acc Id: ENST00000442748   ⟹   ENSP00000411358
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,624,561 - 43,628,871 (-)Ensembl
RefSeq Acc Id: ENST00000452781   ⟹   ENSP00000410676
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,625,363 - 43,629,162 (-)Ensembl
RefSeq Acc Id: ENST00000459959
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,622,951 - 43,623,795 (-)Ensembl
RefSeq Acc Id: ENST00000476510
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,620,490 - 43,627,017 (-)Ensembl
RefSeq Acc Id: ENST00000480263
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,624,614 - 43,625,864 (-)Ensembl
RefSeq Acc Id: ENST00000496137   ⟹   ENSP00000436973
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl643,605,316 - 43,622,167 (-)Ensembl
RefSeq Acc Id: NM_001286216   ⟹   NP_001273145
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,627,341 (-)NCBI
HuRef643,307,393 - 43,316,158 (-)NCBI
CHM1_1643,591,281 - 43,598,153 (-)NCBI
T2T-CHM13v2.0643,449,227 - 43,456,074 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019096   ⟹   NP_061969
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,629,264 (-)NCBI
GRCh37643,588,218 - 43,596,977 (-)NCBI
Build 36643,696,196 - 43,704,914 (-)NCBI Archive
Celera645,139,839 - 45,148,557 (-)RGD
HuRef643,307,393 - 43,316,158 (-)NCBI
CHM1_1643,591,281 - 43,600,046 (-)NCBI
T2T-CHM13v2.0643,449,227 - 43,457,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446476   ⟹   XP_024302244
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,631,333 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446477   ⟹   XP_024302245
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,628,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024446478   ⟹   XP_024302246
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,629,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047418938   ⟹   XP_047274894
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,620,494 - 43,629,264 (-)NCBI
RefSeq Acc Id: XM_054355729   ⟹   XP_054211704
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0643,449,227 - 43,460,058 (-)NCBI
RefSeq Acc Id: XM_054355730   ⟹   XP_054211705
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0643,449,227 - 43,457,997 (-)NCBI
RefSeq Acc Id: XM_054355731   ⟹   XP_054211706
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0643,449,227 - 43,457,649 (-)NCBI
RefSeq Acc Id: XM_054355732   ⟹   XP_054211707
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0643,449,227 - 43,457,983 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_061969   ⟸   NM_019096
- Peptide Label: isoform a
- UniProtKB: Q9NX60 (UniProtKB/Swiss-Prot),   Q9BX10 (UniProtKB/Swiss-Prot),   A0A024RD30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273145   ⟸   NM_001286216
- Peptide Label: isoform b
- UniProtKB: Q9BX10 (UniProtKB/Swiss-Prot),   A8K2K2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024302244   ⟸   XM_024446476
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024302246   ⟸   XM_024446478
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_024302245   ⟸   XM_024446477
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000303997   ⟸   ENST00000307126
RefSeq Acc Id: ENSP00000304893   ⟸   ENST00000307114
RefSeq Acc Id: ENSP00000410676   ⟸   ENST00000452781
RefSeq Acc Id: ENSP00000411358   ⟸   ENST00000442748
RefSeq Acc Id: ENSP00000436973   ⟸   ENST00000496137
RefSeq Acc Id: ENSP00000392944   ⟸   ENST00000419497
RefSeq Acc Id: ENSP00000398905   ⟸   ENST00000432918
RefSeq Acc Id: XP_047274894   ⟸   XM_047418938
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054211704   ⟸   XM_054355729
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054211705   ⟸   XM_054355730
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054211707   ⟸   XM_054355732
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054211706   ⟸   XM_054355731
- Peptide Label: isoform X3
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BX10-F1-model_v2 AlphaFold Q9BX10 1-602 view protein structure

Promoters
RGD ID:7208153
Promoter ID:EPDNEW_H9823
Type:initiation region
Name:GTPBP2_1
Description:GTP binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9825  EPDNEW_H9826  EPDNEW_H9833  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,629,264 - 43,629,324EPDNEW
RGD ID:7208157
Promoter ID:EPDNEW_H9825
Type:initiation region
Name:GTPBP2_3
Description:GTP binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9823  EPDNEW_H9826  EPDNEW_H9833  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,630,031 - 43,630,091EPDNEW
RGD ID:7208161
Promoter ID:EPDNEW_H9826
Type:initiation region
Name:GTPBP2_2
Description:GTP binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9823  EPDNEW_H9825  EPDNEW_H9833  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38643,631,330 - 43,631,390EPDNEW
RGD ID:6804278
Promoter ID:HG_KWN:53667
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000040671,   OTTHUMT00000040672,   OTTHUMT00000040673
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,697,816 - 43,698,627 (-)MPROMDB
RGD ID:6804279
Promoter ID:HG_KWN:53668
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000040675,   OTTHUMT00000040676
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,699,486 - 43,700,687 (-)MPROMDB
RGD ID:6804280
Promoter ID:HG_KWN:53669
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000393882,   OTTHUMT00000040678
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,701,486 - 43,702,082 (-)MPROMDB
RGD ID:6804276
Promoter ID:HG_KWN:53670
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000040669,   OTTHUMT00000040670,   UC010JYV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,702,866 - 43,703,366 (-)MPROMDB
RGD ID:6804429
Promoter ID:HG_KWN:53671
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000307114,   ENST00000372177,   NM_001003690,   NM_019096,   OTTHUMT00000040674,   OTTHUMT00000040677,   UC003OVT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,704,481 - 43,705,902 (+)MPROMDB
RGD ID:6812972
Promoter ID:HG_ACW:68546
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:GTPBP2.KAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 36643,706,781 - 43,707,281 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4670 AgrOrtholog
COSMIC GTPBP2 COSMIC
Ensembl Genes ENSG00000172432 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000303997 ENTREZGENE
  ENSP00000303997.5 UniProtKB/Swiss-Prot
  ENSP00000304893 ENTREZGENE
  ENSP00000304893.7 UniProtKB/Swiss-Prot
  ENSP00000392944.1 UniProtKB/TrEMBL
  ENSP00000398905.1 UniProtKB/TrEMBL
  ENSP00000410676.1 UniProtKB/TrEMBL
  ENSP00000411358.1 UniProtKB/TrEMBL
  ENSP00000436973.1 UniProtKB/TrEMBL
Ensembl Transcript ENST00000307114 ENTREZGENE
  ENST00000307114.11 UniProtKB/Swiss-Prot
  ENST00000307126 ENTREZGENE
  ENST00000307126.10 UniProtKB/Swiss-Prot
  ENST00000419497.5 UniProtKB/TrEMBL
  ENST00000432918.5 UniProtKB/TrEMBL
  ENST00000442748.5 UniProtKB/TrEMBL
  ENST00000452781.1 UniProtKB/TrEMBL
  ENST00000476510 ENTREZGENE
  ENST00000496137.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation factors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000172432 GTEx
HGNC ID HGNC:4670 ENTREZGENE
Human Proteome Map GTPBP2 Human Proteome Map
InterPro GTPBP1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:54676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 54676 ENTREZGENE
OMIM 607434 OMIM
PANTHER ELONGATION FACTOR TU-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP-BINDING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29058 PharmGKB
PROSITE G_TR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50465 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024RD30 ENTREZGENE, UniProtKB/TrEMBL
  A8K2K2 ENTREZGENE, UniProtKB/TrEMBL
  GTPB2_HUMAN UniProtKB/Swiss-Prot
  H0Y4M5_HUMAN UniProtKB/TrEMBL
  H0Y5J1_HUMAN UniProtKB/TrEMBL
  H0Y7A5_HUMAN UniProtKB/TrEMBL
  H0YF05_HUMAN UniProtKB/TrEMBL
  Q9BX10 ENTREZGENE
  Q9NX60 ENTREZGENE
  X6RJ09_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q5T7E8 UniProtKB/Swiss-Prot
  Q8ND84 UniProtKB/Swiss-Prot
  Q8TAH7 UniProtKB/Swiss-Prot
  Q8WUA5 UniProtKB/Swiss-Prot
  Q9HCS9 UniProtKB/Swiss-Prot
  Q9NRU4 UniProtKB/Swiss-Prot
  Q9NX60 UniProtKB/Swiss-Prot