Chfr (checkpoint with forkhead and ring finger domains) - Rat Genome Database

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Gene: Chfr (checkpoint with forkhead and ring finger domains) Mus musculus
Analyze
Symbol: Chfr
Name: checkpoint with forkhead and ring finger domains
RGD ID: 1314933
MGI Page MGI
Description: Enables ubiquitin protein ligase activity. Acts upstream of or within several processes, including cellular protein metabolic process; positive regulation of cellular protein metabolic process; and protein destabilization. Predicted to be located in PML body. Predicted to be active in nucleus. Is expressed in embryo. Orthologous to human CHFR (checkpoint with forkhead and ring finger domains); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3-methylcholanthrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5730484M20Rik; C230082M18; checkpoint with forkhead and RING finger domains protein; E3 ubiquitin-protein ligase CHFR; RING-type E3 ubiquitin transferase CHFR; RNF1; RNF116
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,283,599 - 110,319,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl5110,283,708 - 110,319,838 (+)Ensembl
GRCm385110,135,755 - 110,171,973 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,135,842 - 110,171,972 (+)EnsemblGRCm38mm10GRCm38
MGSCv375110,564,859 - 110,600,991 (+)NCBIGRCm37mm9NCBIm37
MGSCv365110,376,162 - 110,412,271 (+)NCBImm8
Celera5107,262,325 - 107,298,846 (+)NCBICelera
Cytogenetic Map5FNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15467728   PMID:15489334   PMID:15782199   PMID:15793587   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18799693   PMID:19690386   PMID:21245198   PMID:21677750   PMID:21706008   PMID:21873635   PMID:22285184   PMID:22337872   PMID:23268447   PMID:26566864  


Genomics

Comparative Map Data
Chfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,283,599 - 110,319,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl5110,283,708 - 110,319,838 (+)Ensembl
GRCm385110,135,755 - 110,171,973 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,135,842 - 110,171,972 (+)EnsemblGRCm38mm10GRCm38
MGSCv375110,564,859 - 110,600,991 (+)NCBIGRCm37mm9NCBIm37
MGSCv365110,376,162 - 110,412,271 (+)NCBImm8
Celera5107,262,325 - 107,298,846 (+)NCBICelera
Cytogenetic Map5FNCBI
CHFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12132,822,187 - 132,956,304 (-)EnsemblGRCh38hg38GRCh38
GRCh3812132,832,356 - 132,887,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712133,408,942 - 133,464,204 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,927,011 - 131,974,257 (-)NCBINCBI36hg18NCBI36
Build 3412132,027,287 - 132,074,534NCBI
Celera12133,115,986 - 133,164,103 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12130,193,539 - 130,240,836 (-)NCBIHuRef
CHM1_112133,236,937 - 133,284,187 (-)NCBICHM1_1
Chfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21246,504,497 - 46,538,104 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1246,504,497 - 46,538,014 (-)Ensembl
Rnor_6.01252,562,594 - 52,596,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,562,597 - 52,596,076 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01254,299,046 - 54,333,048 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41246,651,265 - 46,684,689 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11246,518,196 - 46,551,621 (-)NCBI
Celera1248,060,734 - 48,093,877 (-)NCBICelera
Cytogenetic Map12q16NCBI
Chfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482233,486 - 267,064 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955482233,485 - 267,064 (+)NCBIChiLan1.0ChiLan1.0
LOC100974874
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112134,922,800 - 134,969,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,923,458 - 134,968,832 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012130,201,704 - 130,247,891 (-)NCBIMhudiblu_PPA_v0panPan3
CHFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126251,369 - 324,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26294,909 - 324,696 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26338,249 - 368,017 (+)NCBI
ROS_Cfam_1.026353,329 - 383,335 (+)NCBI
UMICH_Zoey_3.126294,908 - 324,410 (+)NCBI
UNSW_CanFamBas_1.026381,698 - 411,681 (+)NCBI
UU_Cfam_GSD_1.026313,264 - 342,862 (+)NCBI
Chfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118121,966,521 - 121,996,058 (+)NCBI
SpeTri2.0NW_0049366602,725,019 - 2,754,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,175,768 - 128,207,710 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl11128,175,515 - 128,207,443 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037116,651,258 - 116,683,461 (+)NCBIVero_WHO_p1.0
Chfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474728,187,356 - 28,222,041 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH137227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385110,171,731 - 110,171,923UniSTSGRCm38
MGSCv375110,600,750 - 110,600,942UniSTSGRCm37
Celera5107,298,605 - 107,298,797UniSTS
Cytogenetic Map5FUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575154687119880564Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576297205110297366Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576297205110297366Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576297205110297366Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576297205110297366Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579391781113391927Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580701400114701400Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined580871790114871944Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582690609116690738Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582690609116690738Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587239005121239199Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587239005121239199Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587239005121239199Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587239005121239199Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587239005121239199Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589271017118725963Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589271017124100176Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590173096124173175Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590413140124413285Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590413140124413285Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592682300126682419Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595085348129085464Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595286714129286920Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595317683129317856Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595317683129317856Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595317683129317856Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596172519130172667Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined596883692130883925Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined596883692130883925Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined597871790113883925Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined597871790116738565Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599307426112317856Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99801563126805880Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100527900134527900Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100527900134527900Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101194514135194514Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101725767135725963Mouse
14746986Manh58_mmandible shape 58 (mouse)5102308218136308218Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102806972136807131Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5102900000115400000Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104200000114600000Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104239005120573921Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104350872114963481Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104435822138557193Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104567876138567876Mouse
1357901Mdmsc2_mmodifier of muscularity 2 (mouse)Not determined5107413140112286920Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107829235141829348Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107829235141829348Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107829235141829348Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108614643126805880Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109090758139133150Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110105240117955608Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:828
Count of miRNA genes:295
Interacting mature miRNAs:346
Transcripts:ENSMUST00000014812, ENSMUST00000112519
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY142662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ199205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014812   ⟹   ENSMUSP00000014812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,726 - 110,319,838 (+)Ensembl
GRCm38.p6 Ensembl5110,135,860 - 110,171,972 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112519   ⟹   ENSMUSP00000108138
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,715 - 110,319,837 (+)Ensembl
GRCm38.p6 Ensembl5110,135,849 - 110,171,971 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,311,672 - 110,318,871 (+)Ensembl
GRCm38.p6 Ensembl5110,163,806 - 110,171,005 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197010
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,726 - 110,316,267 (+)Ensembl
GRCm38.p6 Ensembl5110,135,860 - 110,168,401 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,302,700 - 110,310,820 (+)Ensembl
GRCm38.p6 Ensembl5110,154,834 - 110,162,954 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198066   ⟹   ENSMUSP00000142482
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,744 - 110,319,835 (+)Ensembl
GRCm38.p6 Ensembl5110,135,878 - 110,171,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198633   ⟹   ENSMUSP00000143480
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,723 - 110,319,525 (+)Ensembl
GRCm38.p6 Ensembl5110,135,857 - 110,171,659 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199283   ⟹   ENSMUSP00000143389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,773 - 110,294,413 (+)Ensembl
GRCm38.p6 Ensembl5110,135,907 - 110,146,547 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199557   ⟹   ENSMUSP00000143113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,717 - 110,319,386 (+)Ensembl
GRCm38.p6 Ensembl5110,135,851 - 110,171,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199672   ⟹   ENSMUSP00000143310
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,715 - 110,311,673 (+)Ensembl
GRCm38.p6 Ensembl5110,135,849 - 110,163,807 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199811   ⟹   ENSMUSP00000143737
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,791 - 110,291,526 (+)Ensembl
GRCm38.p6 Ensembl5110,135,925 - 110,143,660 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200038   ⟹   ENSMUSP00000142354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5110,283,708 - 110,284,429 (+)Ensembl
GRCm38.p6 Ensembl5110,135,842 - 110,136,563 (+)Ensembl
RefSeq Acc Id: NM_001289577   ⟹   NP_001276506
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,696 - 110,319,839 (+)NCBI
GRCm385110,135,830 - 110,171,973 (+)NCBI
Celera5107,262,315 - 107,298,847 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289578   ⟹   NP_001276507
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,696 - 110,319,839 (+)NCBI
GRCm385110,135,830 - 110,171,973 (+)NCBI
Celera5107,262,315 - 107,298,847 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289579   ⟹   NP_001276508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,696 - 110,319,839 (+)NCBI
GRCm385110,135,830 - 110,171,973 (+)NCBI
Celera5107,262,315 - 107,298,847 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289580   ⟹   NP_001276509
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,696 - 110,319,839 (+)NCBI
GRCm385110,135,830 - 110,171,973 (+)NCBI
Celera5107,262,315 - 107,298,847 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172717   ⟹   NP_766305
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,696 - 110,319,839 (+)NCBI
GRCm385110,135,830 - 110,171,973 (+)NCBI
MGSCv375110,564,859 - 110,600,991 (+)RGD
Celera5107,262,315 - 107,298,847 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011249445   ⟹   XP_011247747
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,635 - 110,319,838 (+)NCBI
GRCm385110,135,766 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249446   ⟹   XP_011247748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,635 - 110,319,838 (+)NCBI
GRCm385110,135,766 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254418   ⟹   XP_030110278
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,633 - 110,319,838 (+)NCBI
GRCm385110,135,765 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254419   ⟹   XP_030110279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,717 - 110,319,838 (+)NCBI
GRCm385110,135,855 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254420   ⟹   XP_030110280
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,744 - 110,319,838 (+)NCBI
GRCm385110,135,770 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165085   ⟹   XP_036020978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,744 - 110,319,838 (+)NCBI
RefSeq Acc Id: XM_036165086   ⟹   XP_036020979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,971 - 110,319,838 (+)NCBI
RefSeq Acc Id: XM_036165087   ⟹   XP_036020980
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,707 - 110,319,838 (+)NCBI
RefSeq Acc Id: XM_036165088   ⟹   XP_036020981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,746 - 110,319,838 (+)NCBI
RefSeq Acc Id: XR_001784679
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,599 - 110,319,838 (+)NCBI
GRCm385110,135,760 - 110,171,972 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942506
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395110,283,599 - 110,319,838 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001276506 (Get FASTA)   NCBI Sequence Viewer  
  NP_001276507 (Get FASTA)   NCBI Sequence Viewer  
  NP_001276508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001276509 (Get FASTA)   NCBI Sequence Viewer  
  NP_766305 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247747 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247748 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110278 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110279 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110280 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020978 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020979 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020980 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020981 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH49792 (Get FASTA)   NCBI Sequence Viewer  
  BAC35008 (Get FASTA)   NCBI Sequence Viewer  
  BAC36912 (Get FASTA)   NCBI Sequence Viewer  
  BAE21536 (Get FASTA)   NCBI Sequence Viewer  
  BAE28209 (Get FASTA)   NCBI Sequence Viewer  
  BAE32331 (Get FASTA)   NCBI Sequence Viewer  
  BAE33172 (Get FASTA)   NCBI Sequence Viewer  
  BAE33309 (Get FASTA)   NCBI Sequence Viewer  
  BAE40960 (Get FASTA)   NCBI Sequence Viewer  
  BAE40969 (Get FASTA)   NCBI Sequence Viewer  
  EDL20037 (Get FASTA)   NCBI Sequence Viewer  
  EDL20038 (Get FASTA)   NCBI Sequence Viewer  
  EDL20039 (Get FASTA)   NCBI Sequence Viewer  
  EDL20040 (Get FASTA)   NCBI Sequence Viewer  
  EDL20041 (Get FASTA)   NCBI Sequence Viewer  
  Q810L3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_766305   ⟸   NM_172717
- Peptide Label: isoform 2
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276509   ⟸   NM_001289580
- Peptide Label: isoform 5
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276508   ⟸   NM_001289579
- Peptide Label: isoform 4
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276506   ⟸   NM_001289577
- Peptide Label: isoform 1
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276507   ⟸   NM_001289578
- Peptide Label: isoform 3
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247747   ⟸   XM_011249445
- Peptide Label: isoform X2
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247748   ⟸   XM_011249446
- Peptide Label: isoform X2
- UniProtKB: Q810L3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030110278   ⟸   XM_030254418
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030110280   ⟸   XM_030254420
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030110279   ⟸   XM_030254419
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000143480   ⟸   ENSMUST00000198633
RefSeq Acc Id: ENSMUSP00000142482   ⟸   ENSMUST00000198066
RefSeq Acc Id: ENSMUSP00000143737   ⟸   ENSMUST00000199811
RefSeq Acc Id: ENSMUSP00000108138   ⟸   ENSMUST00000112519
RefSeq Acc Id: ENSMUSP00000143113   ⟸   ENSMUST00000199557
RefSeq Acc Id: ENSMUSP00000143310   ⟸   ENSMUST00000199672
RefSeq Acc Id: ENSMUSP00000014812   ⟸   ENSMUST00000014812
RefSeq Acc Id: ENSMUSP00000143389   ⟸   ENSMUST00000199283
RefSeq Acc Id: ENSMUSP00000142354   ⟸   ENSMUST00000200038
RefSeq Acc Id: XP_036020980   ⟸   XM_036165087
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036020978   ⟸   XM_036165085
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036020981   ⟸   XM_036165088
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036020979   ⟸   XM_036165086
- Peptide Label: isoform X2
Protein Domains
FHA

Promoters
RGD ID:6887512
Promoter ID:EPDNEW_M7206
Type:initiation region
Name:Chfr_1
Description:Mus musculus checkpoint with forkhead and ring finger domains, transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385110,135,878 - 110,135,938EPDNEW
RGD ID:6837249
Promoter ID:MM_KWN:43351
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000100932,   ENSMUST00000112519,   NM_172717,   UC008YPU.1,   UC008YPV.1,   UC008YPX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365110,564,521 - 110,565,021 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444898 AgrOrtholog
Ensembl Genes ENSMUSG00000014668 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000014812 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108138 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142354 UniProtKB/TrEMBL
  ENSMUSP00000142482 UniProtKB/TrEMBL
  ENSMUSP00000143113 UniProtKB/TrEMBL
  ENSMUSP00000143310 UniProtKB/TrEMBL
  ENSMUSP00000143389 UniProtKB/TrEMBL
  ENSMUSP00000143480 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000143737 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000014812 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112519 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000198066 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000198633 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000199283 UniProtKB/TrEMBL
  ENSMUST00000199557 UniProtKB/TrEMBL
  ENSMUST00000199672 UniProtKB/TrEMBL
  ENSMUST00000199811 UniProtKB/TrEMBL
  ENSMUST00000200038 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro APLF_PBZ UniProtKB/Swiss-Prot
  CHFR_Znf-CRD UniProtKB/Swiss-Prot
  FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
KEGG Report mmu:231600 UniProtKB/Swiss-Prot
MGD MGI:2444898 ENTREZGENE
NCBI Gene 231600 ENTREZGENE
Pfam FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCHH UniProtKB/Swiss-Prot
  zf-CRD UniProtKB/Swiss-Prot
PhenoGen Chfr PhenoGen
PROSITE FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDG0_MOUSE UniProtKB/TrEMBL
  A0A0G2JFC1_MOUSE UniProtKB/TrEMBL
  A0A0G2JFU4_MOUSE UniProtKB/TrEMBL
  A0A0G2JG18_MOUSE UniProtKB/TrEMBL
  A0A0G2JGX6_MOUSE UniProtKB/TrEMBL
  CHFR_MOUSE UniProtKB/Swiss-Prot
  Q3V0G8_MOUSE UniProtKB/TrEMBL
  Q810L3 ENTREZGENE
UniProt Secondary Q3TFD8 UniProtKB/Swiss-Prot
  Q3U233 UniProtKB/Swiss-Prot
  Q3U4U9 UniProtKB/Swiss-Prot
  Q3UGJ9 UniProtKB/Swiss-Prot
  Q8BJZ9 UniProtKB/Swiss-Prot
  Q8BWH4 UniProtKB/Swiss-Prot