Zmym5 (zinc finger, MYM-type 5) - Rat Genome Database

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Gene: Zmym5 (zinc finger, MYM-type 5) Mus musculus
Analyze
Symbol: Zmym5
Name: zinc finger, MYM-type 5
RGD ID: 1314923
MGI Page MGI
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in central nervous system and genitourinary system. Orthologous to human ZMYM5 (zinc finger MYM-type containing 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9830124H08Rik; MGC38922; zinc finger MYM-type protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15302   Gm15303   Gm15304   Gm15314   Gm2869   Gm7869  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,028,042 - 57,049,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,028,042 - 57,049,173 (-)EnsemblGRCm39 Ensembl
GRCm381456,790,585 - 56,815,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,790,585 - 56,811,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,409,425 - 57,430,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,747,431 - 55,765,807 (-)NCBIMGSCv36mm8
Celera1454,588,485 - 54,608,539 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693  
PMID:20412781   PMID:21677750   PMID:21873635   PMID:26275350   PMID:34709266  


Genomics

Comparative Map Data
Zmym5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,028,042 - 57,049,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,028,042 - 57,049,173 (-)EnsemblGRCm39 Ensembl
GRCm381456,790,585 - 56,815,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,790,585 - 56,811,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,409,425 - 57,430,553 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,747,431 - 55,765,807 (-)NCBIMGSCv36mm8
Celera1454,588,485 - 54,608,539 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.45NCBI
ZMYM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381319,823,482 - 19,863,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1319,823,482 - 19,863,649 (-)EnsemblGRCh38hg38GRCh38
GRCh371320,397,622 - 20,437,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361319,309,593 - 19,335,773 (-)NCBINCBI36Build 36hg18NCBI36
Build 341319,309,604 - 19,335,664NCBI
Celera131,459,413 - 1,499,564 (-)NCBICelera
Cytogenetic Map13q12.11NCBI
HuRef131,202,818 - 1,243,159 (-)NCBIHuRef
CHM1_11320,366,146 - 20,406,297 (-)NCBICHM1_1
T2T-CHM13v2.01319,019,698 - 19,059,861 (-)NCBIT2T-CHM13v2.0
Zmym5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81535,036,226 - 35,056,842 (-)NCBIGRCr8
mRatBN7.21530,920,479 - 30,941,249 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,923,241 - 30,941,240 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01537,039,481 - 37,061,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1537,042,396 - 37,056,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,891,187 - 40,912,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,792,204 - 35,810,436 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,798,619 - 35,828,186 (-)NCBI
Celera1530,633,534 - 30,654,333 (-)NCBICelera
Cytogenetic Map15p12NCBI
Zmym5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497673,697 - 697,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497664,382 - 697,772 (-)NCBIChiLan1.0ChiLan1.0
ZMYM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21419,419,899 - 19,490,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11310,532,352 - 10,603,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0131,147,873 - 1,187,375 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11319,462,920 - 19,501,541 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1319,462,306 - 19,501,541 (-)Ensemblpanpan1.1panPan2
ZMYM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,218,630 - 18,296,232 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,219,956 - 18,260,315 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,248,828 - 18,325,768 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,356,479 - 18,434,306 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,358,456 - 18,399,417 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,229,863 - 18,265,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,234,407 - 18,312,258 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,291,603 - 18,368,730 (+)NCBIUU_Cfam_GSD_1.0
Zmym5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,279,812 - 120,316,253 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367201,829,183 - 1,863,713 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367201,826,715 - 1,863,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11576,723 - 630,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111576,721 - 630,607 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,976,055 - 87,007,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,091,376 - 1,133,664 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl31,102,694 - 1,132,641 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605743,436,843 - 43,477,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmym5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477617,841,895 - 17,874,261 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zmym5
622 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2081
Count of miRNA genes:534
Interacting mature miRNAs:619
Transcripts:ENSMUST00000039812, ENSMUST00000111285, ENSMUST00000173954
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE982095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU518427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN534727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000039812   ⟹   ENSMUSP00000043625
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,028,042 - 57,049,173 (-)Ensembl
GRCm38.p6 Ensembl1456,790,585 - 56,811,716 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111285   ⟹   ENSMUSP00000106916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,028,045 - 57,049,173 (-)Ensembl
GRCm38.p6 Ensembl1456,790,588 - 56,811,716 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173954   ⟹   ENSMUSP00000134057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,028,045 - 57,048,921 (-)Ensembl
GRCm38.p6 Ensembl1456,790,588 - 56,811,464 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,034,643 - 57,049,090 (-)Ensembl
GRCm38.p6 Ensembl1456,797,186 - 56,811,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225699   ⟹   ENSMUSP00000153263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,030,785 - 57,049,154 (-)Ensembl
GRCm38.p6 Ensembl1456,793,328 - 56,811,697 (-)Ensembl
RefSeq Acc Id: NM_001253752   ⟹   NP_001240681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,042 - 57,049,173 (-)NCBI
GRCm381456,790,585 - 56,811,716 (-)NCBI
Celera1454,588,482 - 54,609,144 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253753   ⟹   NP_001240682
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,042 - 57,048,921 (-)NCBI
GRCm381456,790,585 - 56,811,464 (-)NCBI
Celera1454,588,482 - 54,609,144 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_144842   ⟹   NP_659091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,042 - 57,049,173 (-)NCBI
GRCm381456,790,585 - 56,811,716 (-)NCBI
MGSCv371457,409,425 - 57,430,553 (-)RGD
Celera1454,588,482 - 54,609,144 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_136882
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,042 - 57,049,173 (-)NCBI
GRCm381456,790,585 - 56,811,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006518852   ⟹   XP_006518915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,056 - 57,049,213 (-)NCBI
GRCm381456,790,600 - 56,811,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006518857   ⟹   XP_006518920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,060 - 57,048,947 (-)NCBI
GRCm381456,790,600 - 56,811,598 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245022   ⟹   XP_011243324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,056 - 57,046,935 (-)NCBI
GRCm381456,790,600 - 56,809,483 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315967   ⟹   XP_017171456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,057 - 57,046,935 (-)NCBI
GRCm381456,792,923 - 56,809,478 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247759   ⟹   XP_030103619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,056 - 57,044,639 (-)NCBI
GRCm381456,790,600 - 56,810,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247761   ⟹   XP_030103621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,060 - 57,048,934 (-)NCBI
GRCm381456,790,600 - 56,811,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158560   ⟹   XP_036014453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,028,056 - 57,046,037 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_659091   ⟸   NM_144842
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240681   ⟸   NM_001253752
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240682   ⟸   NM_001253753
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518915   ⟸   XM_006518852
- Peptide Label: isoform X1
- UniProtKB: Q3U2E2 (UniProtKB/Swiss-Prot),   Q8R1W3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518920   ⟸   XM_006518857
- Peptide Label: isoform X1
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011243324   ⟸   XM_011245022
- Peptide Label: isoform X1
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017171456   ⟸   XM_017315967
- Peptide Label: isoform X1
- UniProtKB: Q8R1W3 (UniProtKB/Swiss-Prot),   Q3U2E2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030103621   ⟸   XM_030247761
- Peptide Label: isoform X1
- UniProtKB: Q3U2E2 (UniProtKB/Swiss-Prot),   Q8R1W3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030103619   ⟸   XM_030247759
- Peptide Label: isoform X1
- UniProtKB: Q3U2E2 (UniProtKB/Swiss-Prot),   Q8R1W3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000106916   ⟸   ENSMUST00000111285
RefSeq Acc Id: ENSMUSP00000153263   ⟸   ENSMUST00000225699
RefSeq Acc Id: ENSMUSP00000134057   ⟸   ENSMUST00000173954
RefSeq Acc Id: ENSMUSP00000043625   ⟸   ENSMUST00000039812
RefSeq Acc Id: XP_036014453   ⟸   XM_036158560
- Peptide Label: isoform X1
- UniProtKB: Q3U2E2 (UniProtKB/Swiss-Prot),   Q8R1W3 (UniProtKB/Swiss-Prot)
Protein Domains
TRASH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U2E2-F1-model_v2 AlphaFold Q3U2E2 1-627 view protein structure

Promoters
RGD ID:8682530
Promoter ID:EPDNEW_M19295
Type:initiation region
Name:Zmym5_1
Description:Mus musculus zinc finger, MYM-type 5 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19296  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381456,811,445 - 56,811,505EPDNEW
RGD ID:8682532
Promoter ID:EPDNEW_M19296
Type:initiation region
Name:Zmym5_2
Description:Mus musculus zinc finger, MYM-type 5 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19295  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381456,811,694 - 56,811,754EPDNEW
RGD ID:6824565
Promoter ID:MM_KWN:17041
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:AK163489_2410022M11RIK,   ENSMUST00000039812,   NM_144842,   UC007UCL.1,   UC007UCN.1,   UC007UCO.1,   UC007UCP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361457,429,246 - 57,432,992 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3041170 AgrOrtholog
Ensembl Genes ENSMUSG00000040123 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039812 ENTREZGENE
  ENSMUST00000039812.16 UniProtKB/Swiss-Prot
  ENSMUST00000111285 ENTREZGENE
  ENSMUST00000111285.9 UniProtKB/Swiss-Prot
  ENSMUST00000173954 ENTREZGENE
  ENSMUST00000173954.3 UniProtKB/Swiss-Prot
  ENSMUST00000225699.2 UniProtKB/TrEMBL
InterPro TRASH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_MYM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:219105 UniProtKB/Swiss-Prot
MGD MGI:3041170 ENTREZGENE
NCBI Gene 219105 ENTREZGENE
PANTHER ZINC FINGER MYM-TYPE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER MYM-TYPE PROTEIN 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-FCS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zmym5 PhenoGen
SMART TRASH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286YDI0_MOUSE UniProtKB/TrEMBL
  Q3TML8_MOUSE UniProtKB/TrEMBL
  Q3TR70_MOUSE UniProtKB/TrEMBL
  Q3U2E2 ENTREZGENE
  Q8BZ73_MOUSE UniProtKB/TrEMBL
  Q8R1W3 ENTREZGENE
  ZMYM5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8R1W3 UniProtKB/Swiss-Prot