FBXO3 (F-box protein 3) - Rat Genome Database

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Gene: FBXO3 (F-box protein 3) Homo sapiens
Analyze
Symbol: FBXO3
Name: F-box protein 3
RGD ID: 1314921
HGNC Page HGNC:13582
Description: Enables ubiquitin ligase-substrate adaptor activity. Involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and response to lipopolysaccharide. Located in cytosol and nucleoplasm. Part of SCF ubiquitin ligase complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp564B092; F-box only protein 3; F-box protein FBX3; FBA; FBX3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,740,944 - 33,774,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,740,939 - 33,774,543 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,762,490 - 33,796,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,719,066 - 33,752,647 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,724,868 - 33,752,647NCBI
Celera1133,909,992 - 33,943,582 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,458,657 - 33,492,237 (-)NCBIHuRef
CHM1_11133,762,004 - 33,795,579 (-)NCBICHM1_1
T2T-CHM13v2.01133,877,954 - 33,911,529 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10531035   PMID:10531037   PMID:10945468   PMID:11230166   PMID:12477932   PMID:12481031   PMID:14702039   PMID:18809579   PMID:19028597   PMID:19615732   PMID:20379614   PMID:21145461  
PMID:21516116   PMID:21873635   PMID:22190034   PMID:22632967   PMID:22939624   PMID:23542741   PMID:23870195   PMID:24403578   PMID:24530506   PMID:24778252   PMID:25721664   PMID:25963833  
PMID:26037928   PMID:26186194   PMID:26972000   PMID:27010866   PMID:27365398   PMID:27462432   PMID:27565346   PMID:27705803   PMID:27880917   PMID:28380382   PMID:28514442   PMID:28515276  
PMID:28561026   PMID:28581483   PMID:28675297   PMID:29103612   PMID:29229926   PMID:29987050   PMID:30171069   PMID:30209976   PMID:30448480   PMID:31091453   PMID:31130363   PMID:31257023  
PMID:31391550   PMID:31515488   PMID:31586073   PMID:32296183   PMID:32552912   PMID:32891887   PMID:33504946   PMID:33545068   PMID:33853758   PMID:33961781   PMID:34315543   PMID:34635651  
PMID:35256949   PMID:35509820   PMID:35563538   PMID:35671810   PMID:36044955   PMID:36114006   PMID:38134227  


Genomics

Comparative Map Data
FBXO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,740,944 - 33,774,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,740,939 - 33,774,543 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,762,490 - 33,796,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,719,066 - 33,752,647 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,724,868 - 33,752,647NCBI
Celera1133,909,992 - 33,943,582 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,458,657 - 33,492,237 (-)NCBIHuRef
CHM1_11133,762,004 - 33,795,579 (-)NCBICHM1_1
T2T-CHM13v2.01133,877,954 - 33,911,529 (-)NCBIT2T-CHM13v2.0
Fbxo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,858,144 - 103,893,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,858,066 - 103,893,585 (+)EnsemblGRCm39 Ensembl
GRCm382104,027,799 - 104,063,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2104,027,721 - 104,063,240 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,867,956 - 103,903,394 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,828,638 - 103,864,076 (+)NCBIMGSCv36mm8
Celera2105,265,922 - 105,300,910 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.49NCBI
Fbxo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,872,185 - 110,904,479 (+)NCBIGRCr8
mRatBN7.2390,417,262 - 90,449,557 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,417,297 - 90,449,557 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,910,311 - 93,942,671 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,509,388 - 102,541,746 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,339,746 - 100,372,121 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,968,827 - 94,000,863 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,968,855 - 94,000,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,608,746 - 100,640,793 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,446,724 - 89,479,650 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera389,478,591 - 89,510,807 (+)NCBICelera
Cytogenetic Map3q32NCBI
Fbxo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542212,461,858 - 12,494,553 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542212,462,329 - 12,492,030 (+)NCBIChiLan1.0ChiLan1.0
FBXO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2935,960,609 - 35,994,171 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11135,965,323 - 35,998,916 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,713,147 - 33,746,730 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,594,854 - 33,628,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,594,854 - 33,628,399 (-)Ensemblpanpan1.1panPan2
FBXO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,944,441 - 33,974,944 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,944,451 - 33,973,968 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,550,035 - 33,580,545 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,555,537 - 34,586,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1834,555,537 - 34,594,140 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11834,114,297 - 34,144,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,707,460 - 33,737,980 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,343,094 - 34,373,628 (+)NCBIUU_Cfam_GSD_1.0
Fbxo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494731,075,996 - 31,108,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,200,757 - 4,234,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,200,791 - 4,232,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,146,444 - 27,184,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,146,407 - 27,183,496 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2229,513,804 - 29,539,556 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1131,509,950 - 31,543,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl131,509,956 - 31,543,611 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,605,747 - 128,639,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476713,379,895 - 13,410,210 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476713,382,187 - 13,410,143 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBXO3
17 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11p14.3-12(chr11:22550115-38199159)x1 copy number loss See cases [RCV000052648] Chr11:22550115..38199159 [GRCh38]
Chr11:22571661..38220709 [GRCh37]
Chr11:22528237..38177285 [NCBI36]
Chr11:11p14.3-12
pathogenic
NM_012175.3(FBXO3):c.1197C>T (p.Phe399=) single nucleotide variant Malignant melanoma [RCV000069338] Chr11:33747172 [GRCh38]
Chr11:33768718 [GRCh37]
Chr11:33725294 [NCBI36]
Chr11:11p13
not provided
NM_012175.3(FBXO3):c.1146C>T (p.Phe382=) single nucleotide variant Malignant melanoma [RCV000069339] Chr11:33747223 [GRCh38]
Chr11:33768769 [GRCh37]
Chr11:33725345 [NCBI36]
Chr11:11p13
not provided
GRCh38/hg38 11p14.2-13(chr11:26368962-35252976)x1 copy number loss See cases [RCV000135295] Chr11:26368962..35252976 [GRCh38]
Chr11:26390509..35274523 [GRCh37]
Chr11:26347085..35231099 [NCBI36]
Chr11:11p14.2-13
pathogenic
GRCh38/hg38 11p15.1-13(chr11:20079474-34463996)x1 copy number loss See cases [RCV000142499] Chr11:20079474..34463996 [GRCh38]
Chr11:20101020..34485543 [GRCh37]
Chr11:20057596..34442119 [NCBI36]
Chr11:11p15.1-13
pathogenic
GRCh37/hg19 11p14.1-12(chr11:30615127-40606139)x1 copy number loss See cases [RCV000240268] Chr11:30615127..40606139 [GRCh37]
Chr11:11p14.1-12
pathogenic
GRCh37/hg19 11p13(chr11:31210842-35436121)x1 copy number loss See cases [RCV000446864] Chr11:31210842..35436121 [GRCh37]
Chr11:11p13
pathogenic
GRCh37/hg19 11p14.1-11.2(chr11:29238811-45494063)x1 copy number loss See cases [RCV000445800] Chr11:29238811..45494063 [GRCh37]
Chr11:11p14.1-11.2
pathogenic
GRCh37/hg19 11p14.1-13(chr11:27895487-34494489)x1 copy number loss See cases [RCV000448524] Chr11:27895487..34494489 [GRCh37]
Chr11:11p14.1-13
pathogenic
GRCh37/hg19 11p13(chr11:31828509-34576695)x1 copy number loss See cases [RCV000448824] Chr11:31828509..34576695 [GRCh37]
Chr11:11p13
pathogenic
GRCh37/hg19 11p13-12(chr11:32782607-36404823)x3 copy number gain See cases [RCV000448055] Chr11:32782607..36404823 [GRCh37]
Chr11:11p13-12
uncertain significance
GRCh37/hg19 11p14.2-11.12(chr11:26574629-50508019)x3 copy number gain See cases [RCV000448603] Chr11:26574629..50508019 [GRCh37]
Chr11:11p14.2-11.12
pathogenic
GRCh37/hg19 11p14.3-13(chr11:25771208-35614978)x1 copy number loss See cases [RCV000512014] Chr11:25771208..35614978 [GRCh37]
Chr11:11p14.3-13
pathogenic
GRCh37/hg19 11p15.5-12(chr11:230615-37698540)x3 copy number gain See cases [RCV000511561] Chr11:230615..37698540 [GRCh37]
Chr11:11p15.5-12
pathogenic
GRCh37/hg19 11p14.1-12(chr11:27588560-41770792)x1 copy number loss See cases [RCV000511434] Chr11:27588560..41770792 [GRCh37]
Chr11:11p14.1-12
pathogenic|uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_012175.4(FBXO3):c.215A>T (p.Asn72Ile) single nucleotide variant Inborn genetic diseases [RCV003257559] Chr11:33768994 [GRCh38]
Chr11:33790540 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.26C>G (p.Ala9Gly) single nucleotide variant Inborn genetic diseases [RCV003303832] Chr11:33774472 [GRCh38]
Chr11:33796018 [GRCh37]
Chr11:11p13
uncertain significance
GRCh37/hg19 11p13(chr11:33297483-34359612)x3 copy number gain not provided [RCV000683354] Chr11:33297483..34359612 [GRCh37]
Chr11:11p13
uncertain significance
GRCh37/hg19 11p13(chr11:32573618-34130228)x1 copy number loss not provided [RCV000683359] Chr11:32573618..34130228 [GRCh37]
Chr11:11p13
uncertain significance
GRCh37/hg19 11p14.1-13(chr11:29883001-33865721)x1 copy number loss not provided [RCV000683364] Chr11:29883001..33865721 [GRCh37]
Chr11:11p14.1-13
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p14.3-12(chr11:24469451-37524085)x1 copy number loss not provided [RCV000737457] Chr11:24469451..37524085 [GRCh37]
Chr11:11p14.3-12
pathogenic
GRCh37/hg19 11p14.3-13(chr11:25196998-34196484)x1 copy number loss not provided [RCV000737466] Chr11:25196998..34196484 [GRCh37]
Chr11:11p14.3-13
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_012175.4(FBXO3):c.251C>G (p.Ser84Cys) single nucleotide variant Inborn genetic diseases [RCV003270979] Chr11:33768958 [GRCh38]
Chr11:33790504 [GRCh37]
Chr11:11p13
uncertain significance
GRCh37/hg19 11p14.3-13(chr11:22079154-35597645)x1 copy number loss not provided [RCV000849589] Chr11:22079154..35597645 [GRCh37]
Chr11:11p14.3-13
pathogenic
GRCh37/hg19 11p15.3-13(chr11:11053978-34732891)x3 copy number gain not provided [RCV001006387] Chr11:11053978..34732891 [GRCh37]
Chr11:11p15.3-13
pathogenic
GRCh37/hg19 11p15.5-13(chr11:235934-33826995)x3 copy number gain not provided [RCV001006372] Chr11:235934..33826995 [GRCh37]
Chr11:11p15.5-13
pathogenic
GRCh37/hg19 11p13(chr11:33221821-34569417)x1 copy number loss not provided [RCV001006402] Chr11:33221821..34569417 [GRCh37]
Chr11:11p13
uncertain significance
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
NM_012175.4(FBXO3):c.661G>A (p.Val221Ile) single nucleotide variant not provided [RCV001688360] Chr11:33755788 [GRCh38]
Chr11:33777334 [GRCh37]
Chr11:11p13
benign
GRCh37/hg19 11p13-12(chr11:32782607-36404823) copy number gain not specified [RCV002052921] Chr11:32782607..36404823 [GRCh37]
Chr11:11p13-12
uncertain significance
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25
pathogenic
GRCh37/hg19 11p13-12(chr11:31372721-38259316)x1 copy number loss not provided [RCV002472502] Chr11:31372721..38259316 [GRCh37]
Chr11:11p13-12
pathogenic
NM_012175.4(FBXO3):c.91C>T (p.Arg31Trp) single nucleotide variant Inborn genetic diseases [RCV002748789] Chr11:33774407 [GRCh38]
Chr11:33795953 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.1406G>C (p.Arg469Pro) single nucleotide variant Inborn genetic diseases [RCV002978362] Chr11:33741918 [GRCh38]
Chr11:33763464 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.1396C>T (p.Arg466Cys) single nucleotide variant Inborn genetic diseases [RCV002803581] Chr11:33741928 [GRCh38]
Chr11:33763474 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.509G>A (p.Arg170His) single nucleotide variant Inborn genetic diseases [RCV002916606] Chr11:33755940 [GRCh38]
Chr11:33777486 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.787A>C (p.Ile263Leu) single nucleotide variant Inborn genetic diseases [RCV002965935] Chr11:33751545 [GRCh38]
Chr11:33773091 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.1394G>A (p.Arg465His) single nucleotide variant Inborn genetic diseases [RCV002769112] Chr11:33741930 [GRCh38]
Chr11:33763476 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.1193G>A (p.Arg398Gln) single nucleotide variant Inborn genetic diseases [RCV002808695] Chr11:33747176 [GRCh38]
Chr11:33768722 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.832G>A (p.Val278Ile) single nucleotide variant Inborn genetic diseases [RCV003203545] Chr11:33750639 [GRCh38]
Chr11:33772185 [GRCh37]
Chr11:11p13
uncertain significance
NM_012175.4(FBXO3):c.1071A>G (p.Pro357=) single nucleotide variant not provided [RCV003394812] Chr11:33747298 [GRCh38]
Chr11:33768844 [GRCh37]
Chr11:11p13
likely benign
NM_012175.4(FBXO3):c.378C>T (p.Asp126=) single nucleotide variant not provided [RCV003394813] Chr11:33758582 [GRCh38]
Chr11:33780128 [GRCh37]
Chr11:11p13
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4258
Count of miRNA genes:1148
Interacting mature miRNAs:1432
Transcripts:ENST00000265651, ENST00000448981, ENST00000526785, ENST00000526952, ENST00000527772, ENST00000529137, ENST00000530013, ENST00000530401, ENST00000531080, ENST00000532057, ENST00000532927, ENST00000533103, ENST00000534136
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D11S4719  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,763,986 - 33,764,126UniSTSGRCh37
Build 361133,720,562 - 33,720,702RGDNCBI36
Celera1133,911,488 - 33,911,628RGD
Cytogenetic Map11p13UniSTS
HuRef1133,460,153 - 33,460,293UniSTS
SHGC-44450  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,765,900 - 33,766,012UniSTSGRCh37
Build 361133,722,476 - 33,722,588RGDNCBI36
Celera1133,913,402 - 33,913,514RGD
Cytogenetic Map11p13UniSTS
HuRef1133,462,067 - 33,462,179UniSTS
TNG Radiation Hybrid Map1115914.0UniSTS
FBXO3_2462  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,762,418 - 33,763,313UniSTSGRCh37
Build 361133,718,994 - 33,719,889RGDNCBI36
Celera1133,909,920 - 33,910,815RGD
HuRef1133,458,585 - 33,459,480UniSTS
WI-11454  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,762,514 - 33,762,645UniSTSGRCh37
Build 361133,719,090 - 33,719,221RGDNCBI36
Celera1133,910,016 - 33,910,147RGD
Cytogenetic Map11p13UniSTS
HuRef1133,458,681 - 33,458,812UniSTS
GeneMap99-GB4 RH Map11130.62UniSTS
Whitehead-RH Map11106.4UniSTS
A007J20  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,762,633 - 33,762,743UniSTSGRCh37
Build 361133,719,209 - 33,719,319RGDNCBI36
Celera1133,910,135 - 33,910,245RGD
Cytogenetic Map11p13UniSTS
HuRef1133,458,800 - 33,458,910UniSTS
GeneMap99-GB4 RH Map11124.58UniSTS
SGC44450  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,765,721 - 33,766,014UniSTSGRCh37
Build 361133,722,297 - 33,722,590RGDNCBI36
Celera1133,913,223 - 33,913,516RGD
Cytogenetic Map11p13UniSTS
HuRef1133,461,888 - 33,462,181UniSTS
GeneMap99-GB4 RH Map11130.62UniSTS
Whitehead-RH Map11113.7UniSTS
FBXO3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371133,768,680 - 33,768,867UniSTSGRCh37
Celera1133,916,182 - 33,916,369UniSTS
HuRef1133,464,847 - 33,465,034UniSTS
D1S3695  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map1p34-p12UniSTS
Cytogenetic Map6q27UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1218 1187 968 136 398 55 3145 872 1781 195 972 1231 94 1 711 2008 3 2
Low 1221 1777 758 488 1526 410 1212 1325 1953 224 488 382 81 493 780 3
Below cutoff 27 27

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_033406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017017533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF174595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF176702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK316286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL049629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG716664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000265651   ⟹   ENSP00000265651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,740,944 - 33,774,520 (-)Ensembl
RefSeq Acc Id: ENST00000448981   ⟹   ENSP00000408836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,746,743 - 33,774,543 (-)Ensembl
RefSeq Acc Id: ENST00000526785   ⟹   ENSP00000435680
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,740,939 - 33,774,347 (-)Ensembl
RefSeq Acc Id: ENST00000526952
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,763,206 - 33,772,003 (-)Ensembl
RefSeq Acc Id: ENST00000527772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,745,937 - 33,748,812 (-)Ensembl
RefSeq Acc Id: ENST00000529137   ⟹   ENSP00000431502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,755,953 - 33,774,504 (-)Ensembl
RefSeq Acc Id: ENST00000530013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,740,956 - 33,774,525 (-)Ensembl
RefSeq Acc Id: ENST00000530401   ⟹   ENSP00000433781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,740,965 - 33,774,518 (-)Ensembl
RefSeq Acc Id: ENST00000531080   ⟹   ENSP00000435165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,741,442 - 33,753,400 (-)Ensembl
RefSeq Acc Id: ENST00000532057   ⟹   ENSP00000434001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,741,739 - 33,753,399 (-)Ensembl
RefSeq Acc Id: ENST00000532927   ⟹   ENSP00000434099
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,747,242 - 33,774,520 (-)Ensembl
RefSeq Acc Id: ENST00000533103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,758,503 - 33,774,314 (-)Ensembl
RefSeq Acc Id: ENST00000534136   ⟹   ENSP00000431745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1133,744,685 - 33,774,504 (-)Ensembl
RefSeq Acc Id: NM_012175   ⟹   NP_036307
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,740,944 - 33,774,520 (-)NCBI
GRCh371133,762,490 - 33,796,071 (-)RGD
Build 361133,719,066 - 33,752,647 (-)NCBI Archive
Celera1133,909,992 - 33,943,582 (-)RGD
HuRef1133,458,657 - 33,492,237 (-)ENTREZGENE
CHM1_11133,762,004 - 33,795,579 (-)NCBI
T2T-CHM13v2.01133,877,954 - 33,911,529 (-)NCBI
Sequence:
RefSeq Acc Id: NM_033406   ⟹   NP_208385
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,740,944 - 33,774,520 (-)NCBI
GRCh371133,762,490 - 33,796,071 (-)RGD
Build 361133,724,865 - 33,752,647 (-)NCBI Archive
Celera1133,909,992 - 33,943,582 (-)RGD
HuRef1133,458,657 - 33,492,237 (-)ENTREZGENE
CHM1_11133,767,803 - 33,795,579 (-)NCBI
T2T-CHM13v2.01133,877,954 - 33,911,529 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519980   ⟹   XP_011518282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,742,773 - 33,774,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011519981   ⟹   XP_011518283
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,744,019 - 33,774,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047426752   ⟹   XP_047282708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,742,773 - 33,768,938 (-)NCBI
RefSeq Acc Id: XM_054368394   ⟹   XP_054224369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01133,879,783 - 33,911,529 (-)NCBI
RefSeq Acc Id: XM_054368395   ⟹   XP_054224370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01133,881,029 - 33,911,529 (-)NCBI
RefSeq Acc Id: XM_054368396   ⟹   XP_054224371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01133,879,783 - 33,905,949 (-)NCBI
Protein Sequences
Protein RefSeqs NP_036307 (Get FASTA)   NCBI Sequence Viewer  
  NP_208385 (Get FASTA)   NCBI Sequence Viewer  
  XP_011518282 (Get FASTA)   NCBI Sequence Viewer  
  XP_011518283 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282708 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224369 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224370 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224371 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF03702 (Get FASTA)   NCBI Sequence Viewer  
  AAF04516 (Get FASTA)   NCBI Sequence Viewer  
  AAH39291 (Get FASTA)   NCBI Sequence Viewer  
  AAH46110 (Get FASTA)   NCBI Sequence Viewer  
  BAA91991 (Get FASTA)   NCBI Sequence Viewer  
  BAD92276 (Get FASTA)   NCBI Sequence Viewer  
  BAG54678 (Get FASTA)   NCBI Sequence Viewer  
  BAG65604 (Get FASTA)   NCBI Sequence Viewer  
  BAH13334 (Get FASTA)   NCBI Sequence Viewer  
  BAH14657 (Get FASTA)   NCBI Sequence Viewer  
  CAB66560 (Get FASTA)   NCBI Sequence Viewer  
  EAW68186 (Get FASTA)   NCBI Sequence Viewer  
  EAW68187 (Get FASTA)   NCBI Sequence Viewer  
  EAW68188 (Get FASTA)   NCBI Sequence Viewer  
  EAW68189 (Get FASTA)   NCBI Sequence Viewer  
  EAW68190 (Get FASTA)   NCBI Sequence Viewer  
  EAW68191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000265651
  ENSP00000265651.3
  ENSP00000408836
  ENSP00000408836.2
  ENSP00000431502.1
  ENSP00000431745
  ENSP00000431745.1
  ENSP00000433781.1
  ENSP00000434001.1
  ENSP00000434099.1
  ENSP00000435165.1
  ENSP00000435680.1
GenBank Protein Q9UK99 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036307   ⟸   NM_012175
- Peptide Label: isoform 1
- UniProtKB: Q9H0V2 (UniProtKB/Swiss-Prot),   Q86X90 (UniProtKB/Swiss-Prot),   D3DR05 (UniProtKB/Swiss-Prot),   B3KY16 (UniProtKB/Swiss-Prot),   Q9NUX2 (UniProtKB/Swiss-Prot),   Q9UK99 (UniProtKB/Swiss-Prot),   Q59GS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_208385   ⟸   NM_033406
- Peptide Label: isoform 2
- UniProtKB: Q59GS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011518282   ⟸   XM_011519980
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011518283   ⟸   XM_011519981
- Peptide Label: isoform X2
- UniProtKB: Q59GS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000433781   ⟸   ENST00000530401
RefSeq Acc Id: ENSP00000435165   ⟸   ENST00000531080
RefSeq Acc Id: ENSP00000434001   ⟸   ENST00000532057
RefSeq Acc Id: ENSP00000434099   ⟸   ENST00000532927
RefSeq Acc Id: ENSP00000431745   ⟸   ENST00000534136
RefSeq Acc Id: ENSP00000435680   ⟸   ENST00000526785
RefSeq Acc Id: ENSP00000408836   ⟸   ENST00000448981
RefSeq Acc Id: ENSP00000265651   ⟸   ENST00000265651
RefSeq Acc Id: ENSP00000431502   ⟸   ENST00000529137
RefSeq Acc Id: XP_047282708   ⟸   XM_047426752
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054224369   ⟸   XM_054368394
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054224371   ⟸   XM_054368396
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054224370   ⟸   XM_054368395
- Peptide Label: isoform X2
- UniProtKB: Q59GS0 (UniProtKB/TrEMBL)
Protein Domains
ApaG   F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UK99-F1-model_v2 AlphaFold Q9UK99 1-471 view protein structure

Promoters
RGD ID:6788760
Promoter ID:HG_KWN:12601
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000321458,   NM_012175,   NM_033406,   UC001MUY.1,   UC001MVB.1,   UC009YKB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361133,752,001 - 33,752,802 (-)MPROMDB
RGD ID:7220025
Promoter ID:EPDNEW_H15758
Type:initiation region
Name:FBXO3_1
Description:F-box protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381133,774,520 - 33,774,580EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13582 AgrOrtholog
COSMIC FBXO3 COSMIC
Ensembl Genes ENSG00000110429 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000265651 ENTREZGENE
  ENST00000265651.8 UniProtKB/Swiss-Prot
  ENST00000448981 ENTREZGENE
  ENST00000448981.6 UniProtKB/Swiss-Prot
  ENST00000526785.5 UniProtKB/TrEMBL
  ENST00000529137.1 UniProtKB/TrEMBL
  ENST00000530401.5 UniProtKB/Swiss-Prot
  ENST00000531080.5 UniProtKB/TrEMBL
  ENST00000532057.5 UniProtKB/TrEMBL
  ENST00000532927.5 UniProtKB/TrEMBL
  ENST00000534136 ENTREZGENE
  ENST00000534136.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.1580.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000110429 GTEx
HGNC ID HGNC:13582 ENTREZGENE
Human Proteome Map FBXO3 Human Proteome Map
InterPro ApaG_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ApaG_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Knr4/Smi1-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Knr4/Smi1-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:26273 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 26273 ENTREZGENE
OMIM 609089 OMIM
PANTHER F-BOX ONLY PROTEIN 3 UniProtKB/Swiss-Prot
  F-BOX ONLY PROTEIN 3 UniProtKB/Swiss-Prot
  F-BOX ONLY PROTEIN 3 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 3 UniProtKB/TrEMBL
Pfam DUF525 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMI1_KNR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28040 PharmGKB
PROSITE APAG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMI1_KNR4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF110069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF160631 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B3KY16 ENTREZGENE
  B4E3U2_HUMAN UniProtKB/TrEMBL
  D3DR05 ENTREZGENE
  E9PJM3_HUMAN UniProtKB/TrEMBL
  E9PL46_HUMAN UniProtKB/TrEMBL
  FBX3_HUMAN UniProtKB/Swiss-Prot
  G3V1E0_HUMAN UniProtKB/TrEMBL
  Q49AF1_HUMAN UniProtKB/TrEMBL
  Q59GS0 ENTREZGENE, UniProtKB/TrEMBL
  Q86X90 ENTREZGENE
  Q9H0V2 ENTREZGENE
  Q9NUX2 ENTREZGENE
  Q9UK99 ENTREZGENE
UniProt Secondary B3KY16 UniProtKB/Swiss-Prot
  D3DR05 UniProtKB/Swiss-Prot
  Q86X90 UniProtKB/Swiss-Prot
  Q9H0V2 UniProtKB/Swiss-Prot
  Q9NUX2 UniProtKB/Swiss-Prot