Arid3b (AT-rich interaction domain 3B) - Rat Genome Database

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Gene: Arid3b (AT-rich interaction domain 3B) Mus musculus
Analyze
Symbol: Arid3b
Name: AT-rich interaction domain 3B (Ensembl:AT rich interactive domain 3B (BRIGHT-like))
RGD ID: 1314898
MGI Page MGI
Description: Predicted to enable DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; limb; and sensory organ. Orthologous to human ARID3B (AT-rich interaction domain 3B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ARID domain-containing protein 3B; AT rich interactive domain 3B (Bright like); AT rich interactive domain 3B (BRIGHT-like); AT-rich interactive domain-containing protein 3B; Bd; Bdp; bright and dead ringer gene product homologous protein Bdp; bright and dead ringer protein; bright-like protein; dead ringer homolog 2; Dr; Dri2; MGC59291
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,697,636 - 57,744,130 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,697,636 - 57,744,076 (-)EnsemblGRCm39 Ensembl
GRCm38957,790,353 - 57,836,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,790,353 - 57,836,793 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,638,303 - 57,684,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,588,633 - 57,634,621 (-)NCBIMGSCv36mm8
Celera955,019,699 - 55,065,691 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8543152   PMID:10349636   PMID:10838570   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15922553  
PMID:16141072   PMID:16141073   PMID:16325481   PMID:16530748   PMID:16951138   PMID:17093407   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20362541   PMID:20362542   PMID:20412781  
PMID:21199920   PMID:21267068   PMID:21307092   PMID:21677750   PMID:21873635   PMID:21955986   PMID:22083510   PMID:22751132   PMID:23395962   PMID:23630078   PMID:23892456   PMID:24704276  
PMID:25336743   PMID:27537840   PMID:34062094  


Genomics

Comparative Map Data
Arid3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,697,636 - 57,744,130 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,697,636 - 57,744,076 (-)EnsemblGRCm39 Ensembl
GRCm38957,790,353 - 57,836,847 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,790,353 - 57,836,793 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,638,303 - 57,684,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,588,633 - 57,634,621 (-)NCBIMGSCv36mm8
Celera955,019,699 - 55,065,691 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.56NCBI
ARID3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,541,220 - 74,598,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,541,206 - 74,598,131 (+)EnsemblGRCh38hg38GRCh38
GRCh371574,833,561 - 74,890,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,620,601 - 72,677,525 (+)NCBINCBI36Build 36hg18NCBI36
Build 341572,620,636 - 72,677,523NCBI
Celera1551,781,307 - 51,840,407 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,629,712 - 51,688,633 (+)NCBIHuRef
CHM1_11574,951,997 - 75,008,919 (+)NCBICHM1_1
T2T-CHM13v2.01572,408,943 - 72,468,032 (+)NCBIT2T-CHM13v2.0
Arid3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,089,141 - 67,136,764 (-)NCBIGRCr8
mRatBN7.2858,193,268 - 58,240,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,193,418 - 58,238,318 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,724,445 - 63,769,156 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,002,013 - 62,046,715 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,866,560 - 59,911,273 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,569,601 - 62,616,837 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,569,528 - 62,616,828 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,346,404 - 62,393,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,560,831 - 61,606,146 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1861,581,882 - 61,625,123 (-)NCBI
Celera857,659,216 - 57,704,045 (-)NCBICelera
Cytogenetic Map8q24NCBI
Arid3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,271,387 - 3,319,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,272,820 - 3,318,820 (-)NCBIChiLan1.0ChiLan1.0
ARID3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,768,154 - 63,827,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,931,744 - 67,990,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,482,870 - 53,542,063 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,102,315 - 73,161,788 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,104,984 - 73,159,422 (+)Ensemblpanpan1.1panPan2
ARID3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,640,673 - 37,694,291 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,640,663 - 37,692,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,574,016 - 37,628,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03037,845,795 - 37,899,986 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,845,834 - 37,898,533 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,798,578 - 37,852,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,824,147 - 37,878,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,079,489 - 38,133,526 (+)NCBIUU_Cfam_GSD_1.0
Arid3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,692,084 - 115,737,335 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,540,054 - 33,586,826 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,540,159 - 33,585,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,932,461 - 58,998,711 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,932,450 - 58,998,707 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,604,350 - 63,659,306 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARID3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1268,884,391 - 8,943,803 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl268,882,821 - 8,941,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048132,686,204 - 132,745,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478165,588 - 119,496 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478165,586 - 119,562 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arid3b
894 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4054
Count of miRNA genes:877
Interacting mature miRNAs:1188
Transcripts:ENSMUST00000004780, ENSMUST00000098686, ENSMUST00000114165, ENSMUST00000164010, ENSMUST00000164035, ENSMUST00000167670, ENSMUST00000169563, ENSMUST00000170477, ENSMUST00000171444, ENSMUST00000171949
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95750728363207282Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001379353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF116847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000004780   ⟹   ENSMUSP00000004780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,697,796 - 57,741,519 (-)Ensembl
GRCm38.p6 Ensembl957,790,513 - 57,834,236 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098686   ⟹   ENSMUSP00000096283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,701,970 - 57,744,076 (-)Ensembl
GRCm38.p6 Ensembl957,794,687 - 57,836,793 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114165   ⟹   ENSMUSP00000109802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,699,706 - 57,743,761 (-)Ensembl
GRCm38.p6 Ensembl957,792,423 - 57,836,478 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164010   ⟹   ENSMUSP00000126889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,697,636 - 57,743,989 (-)Ensembl
GRCm38.p6 Ensembl957,790,353 - 57,836,706 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164035   ⟹   ENSMUSP00000131677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,701,969 - 57,744,044 (-)Ensembl
GRCm38.p6 Ensembl957,794,686 - 57,836,761 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,715,413 - 57,744,053 (-)Ensembl
GRCm38.p6 Ensembl957,808,130 - 57,836,770 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,697,642 - 57,698,931 (-)Ensembl
GRCm38.p6 Ensembl957,790,359 - 57,791,648 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170477   ⟹   ENSMUSP00000130902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,705,433 - 57,727,910 (-)Ensembl
GRCm38.p6 Ensembl957,798,150 - 57,820,627 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171444   ⟹   ENSMUSP00000130173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,697,639 - 57,743,991 (-)Ensembl
GRCm38.p6 Ensembl957,790,356 - 57,836,708 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171949   ⟹   ENSMUSP00000127525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl957,699,444 - 57,703,504 (-)Ensembl
GRCm38.p6 Ensembl957,792,161 - 57,796,221 (-)Ensembl
RefSeq Acc Id: NM_001379353   ⟹   NP_001366282
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,697,636 - 57,744,062 (-)NCBI
GRCm38957,790,353 - 57,836,779 (-)NCBI
Sequence:
RefSeq Acc Id: NM_019689   ⟹   NP_062663
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,697,779 - 57,743,767 (-)NCBI
GRCm38957,790,496 - 57,836,484 (-)NCBI
MGSCv37957,638,303 - 57,684,291 (-)RGD
Celera955,019,699 - 55,065,691 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511292   ⟹   XP_006511355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,702,225 - 57,744,130 (-)NCBI
GRCm38957,794,951 - 57,836,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242774   ⟹   XP_011241076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,697,636 - 57,741,517 (-)NCBI
GRCm38957,790,353 - 57,834,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242776   ⟹   XP_011241078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,697,636 - 57,712,735 (-)NCBI
GRCm38957,790,353 - 57,805,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244462   ⟹   XP_030100322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39957,697,636 - 57,744,125 (-)NCBI
GRCm38957,790,353 - 57,836,842 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_062663   ⟸   NM_019689
- UniProtKB: Q3UTG1 (UniProtKB/Swiss-Prot),   Q810L9 (UniProtKB/Swiss-Prot),   Q9Z1N7 (UniProtKB/Swiss-Prot),   B2RWY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511355   ⟸   XM_006511292
- Peptide Label: isoform X1
- UniProtKB: F8WIN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241076   ⟸   XM_011242774
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011241078   ⟸   XM_011242776
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030100322   ⟸   XM_030244462
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001366282   ⟸   NM_001379353
- UniProtKB: Q9Z1N7 (UniProtKB/Swiss-Prot),   Q3UTG1 (UniProtKB/Swiss-Prot),   Q810L9 (UniProtKB/Swiss-Prot),   B2RWY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000130902   ⟸   ENSMUST00000170477
RefSeq Acc Id: ENSMUSP00000131677   ⟸   ENSMUST00000164035
RefSeq Acc Id: ENSMUSP00000126889   ⟸   ENSMUST00000164010
RefSeq Acc Id: ENSMUSP00000127525   ⟸   ENSMUST00000171949
RefSeq Acc Id: ENSMUSP00000130173   ⟸   ENSMUST00000171444
RefSeq Acc Id: ENSMUSP00000109802   ⟸   ENSMUST00000114165
RefSeq Acc Id: ENSMUSP00000096283   ⟸   ENSMUST00000098686
RefSeq Acc Id: ENSMUSP00000004780   ⟸   ENSMUST00000004780
Protein Domains
ARID   REKLES

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z1N7-F1-model_v2 AlphaFold Q9Z1N7 1-568 view protein structure

Promoters
RGD ID:6844179
Promoter ID:MM_KWN:57557
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung,   MEF_B4
Transcripts:ENSMUST00000052570,   ENSMUST00000098686,   ENSMUST00000114165,   UC009PVV.1,   UC009PVW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36957,684,381 - 57,684,881 (-)MPROMDB
RGD ID:8669766
Promoter ID:EPDNEW_M12913
Type:single initiation site
Name:Arid3b_2
Description:Mus musculus AT rich interactive domain 3B (BRIGHT-like) , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12914  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38957,834,154 - 57,834,214EPDNEW
RGD ID:8669768
Promoter ID:EPDNEW_M12914
Type:initiation region
Name:Arid3b_1
Description:Mus musculus AT rich interactive domain 3B (BRIGHT-like) , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12913  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38957,836,779 - 57,836,839EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1930768 AgrOrtholog
Ensembl Genes ENSMUSG00000004661 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004780.16 UniProtKB/Swiss-Prot
  ENSMUST00000098686 ENTREZGENE
  ENSMUST00000098686.4 UniProtKB/TrEMBL
  ENSMUST00000114165.9 UniProtKB/TrEMBL
  ENSMUST00000164010.8 UniProtKB/TrEMBL
  ENSMUST00000164035.8 UniProtKB/Swiss-Prot
  ENSMUST00000170477.2 UniProtKB/TrEMBL
  ENSMUST00000171444 ENTREZGENE
  ENSMUST00000171444.8 UniProtKB/Swiss-Prot
  ENSMUST00000171949.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARI3A/B/C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARID_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REKLES_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56380 UniProtKB/Swiss-Prot
MGD MGI:1930768 ENTREZGENE
NCBI Gene 56380 ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arid3b PhenoGen
PROSITE ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REKLES UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRIGHT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ARI3B_MOUSE UniProtKB/Swiss-Prot
  B2RWY2 ENTREZGENE, UniProtKB/TrEMBL
  E9PW42_MOUSE UniProtKB/TrEMBL
  E9Q9J9_MOUSE UniProtKB/TrEMBL
  F6TCR9_MOUSE UniProtKB/TrEMBL
  F8WIN2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UTG1 ENTREZGENE
  Q3V3M5_MOUSE UniProtKB/TrEMBL
  Q810L9 ENTREZGENE
  Q9Z1N7 ENTREZGENE
UniProt Secondary Q3UTG1 UniProtKB/Swiss-Prot
  Q810L9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Arid3b  AT-rich interaction domain 3B  Arid3b  AT rich interactive domain 3B (BRIGHT-like)  Symbol and/or name change 5135510 APPROVED