Tjp1 (tight junction protein 1) - Rat Genome Database

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Gene: Tjp1 (tight junction protein 1) Mus musculus
Analyze
Symbol: Tjp1
Name: tight junction protein 1
RGD ID: 1314850
MGI Page MGI
Description: Exhibits connexin binding activity and protein domain specific binding activity. Involved in several processes, including negative regulation of stress fiber assembly; positive regulation of sprouting angiogenesis; and sensory perception of sound. Localizes to several cellular components, including apicolateral plasma membrane; bicellular tight junction; and intercellular canaliculus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and sensory organ. Orthologous to human TJP1 (tight junction protein 1); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Gm1693; predicted gene 1693; tight junction protein ZO-1; ZO; ZO-; ZO1; zona occludens protein 1; zonula occludens protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39764,945,913 - 65,177,629 (-)NCBIGRCm39mm39
GRCm39 Ensembl764,945,913 - 65,177,529 (-)Ensembl
GRCm38765,296,165 - 65,527,850 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,296,165 - 65,527,781 (-)EnsemblGRCm38mm10GRCm38
MGSCv37772,441,051 - 72,516,130 (-)NCBIGRCm37mm9NCBIm37
MGSCv36765,175,118 - 65,250,189 (-)NCBImm8
Celera762,713,602 - 62,789,529 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(R)-carnitine  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 17-glucosiduronic acid  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-D  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxy-17beta-estradiol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxynon-2-enal  (ISO)
5-(1,4-diazepane-1-sulfonyl)isoquinoline  (ISO)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-azacytidine  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (EXP)
alpha,alpha-trehalose  (EXP)
alpha-D-galactose  (EXP)
anthocyanin  (ISO)
antirheumatic drug  (ISO)
apocynin  (EXP,ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
bucladesine  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carrageenan  (ISO)
chelerythrine  (ISO)
chlorogenic acid  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP,ISO)
clopidogrel  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
crocidolite asbestos  (EXP,ISO)
curcumin  (EXP)
cycloheximide  (ISO)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP,ISO)
decabromodiphenyl ether  (ISO)
Deoxycorticosterone acetate  (EXP)
deoxynivalenol  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
dieldrin  (ISO)
diiodine  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
fasudil hydrochloride  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
folpet  (EXP)
furan  (EXP)
galactose  (EXP)
gamma-hexachlorocyclohexane  (EXP,ISO)
gamma-linolenic acid  (ISO)
genistein  (ISO)
Ginkgoic acid  (ISO)
Ginkgolide A  (EXP)
ginsenoside Re  (EXP)
glucose  (EXP,ISO)
glycyrrhizinic acid  (EXP)
Goe 6976  (ISO)
hexadecanoic acid  (EXP)
homocysteine  (EXP)
hydrogen peroxide  (ISO)
hydrogen sulfide  (EXP)
hydroquinone  (ISO)
imidacloprid  (ISO)
indometacin  (ISO)
kaempferol  (EXP)
L-ascorbic acid  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
levamisole  (EXP)
lipopolysaccharide  (EXP,ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
lithocholic acid  (ISO)
losartan  (ISO)
LY294002  (ISO)
malaoxon  (ISO)
malathion  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
microcystin-LR  (EXP,ISO)
mifepristone  (ISO)
ML-7  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
myricetin  (ISO)
N(6),N(6)-dimethyladenine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
nicotine  (ISO)
nitric oxide  (EXP,ISO)
Nonylphenol  (ISO)
ochratoxin A  (ISO)
octhilinone  (EXP)
okadaic acid  (ISO)
oroxylin A  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
patulin  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenol  (ISO)
phosgene  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
potassium iodide  (ISO)
probenecid  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rifampicin  (EXP)
ritonavir  (ISO)
rotenone  (ISO)
rottlerin  (ISO)
Salidroside  (EXP)
salubrinal  (EXP)
saquinavir  (ISO)
SB 203580  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sodium chloride  (EXP)
sodium fluoride  (EXP)
sodium sulfide (anhydrous)  (EXP)
sorafenib  (ISO)
staurosporine  (ISO)
streptozocin  (EXP)
tamoxifen  (EXP)
telmisartan  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thalidomide  (EXP)
thapsigargin  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tributylstannane  (ISO)
trichostatin A  (EXP,ISO)
trimellitic anhydride  (EXP)
Triptolide  (EXP)
troglitazone  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
wortmannin  (ISO)
zafirlukast  (EXP,ISO)
zardaverine  (ISO)
zileuton  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal developmental vascular remodeling  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal glomerular filtration barrier morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal kidney pelvis morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal podocyte foot process morphology  (IAGP)
abnormal podocyte slit diaphragm morphology  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
abnormal vitelline vascular remodeling  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
absent podocyte slit diaphragm  (IAGP)
albuminuria  (IAGP)
decreased embryo size  (IAGP)
detached podocyte  (IAGP)
dilated allantois  (IAGP)
dilated renal tubules  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
failure of chorioallantoic fusion  (IAGP)
failure of initiation of embryo turning  (IAGP)
fused podocyte foot processes  (IAGP)
glomerulosclerosis  (IAGP)
granular kidney  (IAGP)
increased allantois apoptosis  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased neural tube apoptosis  (IAGP)
increased renal glomerulus basement membrane thickness  (IAGP)
increased urine protein level  (IAGP)
kidney papillary atrophy  (IAGP)
no abnormal phenotype detected  (IAGP)
pale kidney  (IAGP)
podocyte foot process effacement  (IAGP)
postnatal growth retardation  (IAGP)
renal cast  (IAGP)
References

References - curated
1. Chen W, etal., J Neurochem. 2009 Nov;111(3):726-36. Epub 2009 Aug 27.
2. Khailova L, etal., Pediatr Res. 2009 Aug;66(2):140-4.
3. Khan M, etal., J Neuroinflammation. 2009 Nov 4;6:32.
4. Li FY and Li Y, World J Gastroenterol. 2009 Aug 7;15(29):3621-30.
5. Li Q, etal., J Cell Mol Med. 2009 Sep;13(9B):4061-76. Epub 2009 Nov 19.
6. Liang JR and Yang H, Biomed Pharmacother. 2020 May;125:109585. doi: 10.1016/j.biopha.2019.109585. Epub 2020 Feb 25.
7. Maly IP and Landmann L, Histochem Cell Biol. 2008 Mar;129(3):289-99. Epub 2008 Jan 15.
8. MGD data from the GO Consortium
9. Nemeth Z, etal., Pathol Oncol Res. 2009 Sep;15(3):533-9. Epub .
10. Pin CL, etal., J Cell Biol 2001 Nov 12;155(4):519-30. Epub 2001 Nov 5.
11. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12. Qu YZ, etal., Eur J Pharmacol. 2009 Mar 15;606(1-3):137-41. Epub 2009 Jan 25.
13. RGD automated import pipeline
14. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. RGD automated import pipeline for gene-chemical interactions
16. Rincon-Choles H, etal., Diabetes. 2006 Apr;55(4):894-900.
17. Ronaldson PT, etal., J Cereb Blood Flow Metab. 2009 Jun;29(6):1084-98. Epub 2009 Mar 25.
18. Simard JM, etal., J Cereb Blood Flow Metab. 2009 Feb;29(2):317-30. Epub 2008 Oct 15.
19. Trinh L, etal., Mol Vis. 2008 Jun 16;14:1149-56.
20. Wu Z, etal., Neurobiol Dis. 2008 Dec;32(3):543-51. Epub 2008 Sep 21.
Additional References at PubMed
PMID:1299356   PMID:7798316   PMID:8155583   PMID:8201022   PMID:8486731   PMID:8825647   PMID:8950514   PMID:9169849   PMID:9187087   PMID:9302265   PMID:9824655   PMID:10026224  
PMID:10191061   PMID:10320755   PMID:10349636   PMID:10395790   PMID:10469590   PMID:10477764   PMID:10482238   PMID:10601346   PMID:10613913   PMID:10623655   PMID:10811610   PMID:10862698  
PMID:10864459   PMID:10922068   PMID:11025210   PMID:11042159   PMID:11071758   PMID:11076861   PMID:11217851   PMID:11331305   PMID:11557048   PMID:11564885   PMID:11689568   PMID:11700038  
PMID:11706048   PMID:11731229   PMID:11781569   PMID:11891983   PMID:12023291   PMID:12060405   PMID:12064591   PMID:12068294   PMID:12203721   PMID:12403705   PMID:12424224   PMID:12435353  
PMID:12466851   PMID:12477932   PMID:12507281   PMID:12515806   PMID:12520002   PMID:12642503   PMID:12673830   PMID:12714971   PMID:12717711   PMID:12743111   PMID:12808044   PMID:12832289  
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PMID:15855237   PMID:15882861   PMID:15927725   PMID:15947259   PMID:15950600   PMID:16045494   PMID:16051690   PMID:16102745   PMID:16103213   PMID:16105026   PMID:16118245   PMID:16138077  
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PMID:18046313   PMID:18084280   PMID:18086565   PMID:18172007   PMID:18199970   PMID:18227155   PMID:18292208   PMID:18308723   PMID:18337546   PMID:18344992   PMID:18353970   PMID:18393386  
PMID:18403412   PMID:18423437   PMID:18582453   PMID:18596233   PMID:18603586   PMID:18618131   PMID:18652817   PMID:18718461   PMID:18757308   PMID:18799693   PMID:18804439   PMID:18809908  
PMID:18815262   PMID:18816447   PMID:18817772   PMID:18849982   PMID:19033388   PMID:19129494   PMID:19154719   PMID:19170756   PMID:19363157   PMID:19364920   PMID:19389377   PMID:19403103  
PMID:19407242   PMID:19429912   PMID:19439604   PMID:19447104   PMID:19506035   PMID:19509472   PMID:19538286   PMID:19551907   PMID:19553286   PMID:19590046   PMID:19623611   PMID:19640478  
PMID:19652092   PMID:19665016   PMID:19726564   PMID:19733164   PMID:19772664   PMID:19820184   PMID:19835853   PMID:19841136   PMID:19841260   PMID:19914171   PMID:20003423   PMID:20059958  
PMID:20080746   PMID:20081189   PMID:20089884   PMID:20093627   PMID:20181838   PMID:20371769   PMID:20404178   PMID:20473291   PMID:20506362   PMID:20533404   PMID:20551175   PMID:20554841  
PMID:20578065   PMID:20584329   PMID:20602916   PMID:20619750   PMID:20643355   PMID:20808826   PMID:20823064   PMID:20944625   PMID:20957455   PMID:20962046   PMID:20978075   PMID:21038445  
PMID:21074523   PMID:21074722   PMID:21098570   PMID:21186337   PMID:21191420   PMID:21203896   PMID:21209887   PMID:21267068   PMID:21269662   PMID:21282606   PMID:21284019   PMID:21285373  
PMID:21345181   PMID:21346149   PMID:21347296   PMID:21350012   PMID:21396893   PMID:21401944   PMID:21406566   PMID:21411630   PMID:21431884   PMID:21521738   PMID:21571225   PMID:21677750  
PMID:21693517   PMID:21734410   PMID:21736876   PMID:21769484   PMID:21798896   PMID:21839117   PMID:21873635   PMID:21880782   PMID:21884682   PMID:21920314   PMID:21925491   PMID:21947081  
PMID:21949412   PMID:21991385   PMID:22028439   PMID:22056358   PMID:22072575   PMID:22121117   PMID:22144466   PMID:22155109   PMID:22178591   PMID:22182523   PMID:22190459   PMID:22275141  
PMID:22321830   PMID:22334078   PMID:22340501   PMID:22357932   PMID:22410172   PMID:22479204   PMID:22491404   PMID:22510200   PMID:22512338   PMID:22538088   PMID:22627279   PMID:22665792  
PMID:22689267   PMID:22705452   PMID:22723298   PMID:22782886   PMID:22819673   PMID:22832491   PMID:22902295   PMID:22946046   PMID:23122850   PMID:23132931   PMID:23175628   PMID:23177622  
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PMID:23434913   PMID:23466739   PMID:23535656   PMID:23568966   PMID:23610556   PMID:23616926   PMID:23675446   PMID:23685254   PMID:23690951   PMID:23707896   PMID:23728800   PMID:23761676  
PMID:23789091   PMID:23791728   PMID:23816618   PMID:23824537   PMID:23863479   PMID:23900075   PMID:23977053   PMID:23979167   PMID:24043783   PMID:24058167   PMID:24095903   PMID:24135232  
PMID:24164893   PMID:24173802   PMID:24191021   PMID:24244596   PMID:24338688   PMID:24339795   PMID:24348274   PMID:24375017   PMID:24381198   PMID:24384391   PMID:24413171   PMID:24449844  
PMID:24457600   PMID:24574009   PMID:24603431   PMID:24715457   PMID:24753151   PMID:24801048   PMID:24872319   PMID:24875170   PMID:24889144   PMID:24905925   PMID:24915007   PMID:24927569  
PMID:24942165   PMID:24979729   PMID:24990151   PMID:25024228   PMID:25107366   PMID:25133425   PMID:25139745   PMID:25145929   PMID:25182747   PMID:25184792   PMID:25200553   PMID:25209997  
PMID:25248927   PMID:25296022   PMID:25340345   PMID:25382142   PMID:25403566   PMID:25410658   PMID:25486565   PMID:25512490   PMID:25588837   PMID:25596276   PMID:25605782   PMID:25636444  
PMID:25678108   PMID:25721514   PMID:25742799   PMID:25753039   PMID:25753534   PMID:25788872   PMID:25885041   PMID:26040287   PMID:26076477   PMID:26114479   PMID:26114487   PMID:26116663  
PMID:26184908   PMID:26209645   PMID:26212757   PMID:26231217   PMID:26235047   PMID:26243870   PMID:26258622   PMID:26289751   PMID:26332085   PMID:26336360   PMID:26382033   PMID:26416966  
PMID:26455409   PMID:26490995   PMID:26494538   PMID:26527742   PMID:26529256   PMID:26609154   PMID:26628093   PMID:26631503   PMID:26657766   PMID:26657772   PMID:26685160   PMID:26729464  
PMID:26755700   PMID:26802325   PMID:26809587   PMID:26839363   PMID:26856660   PMID:26859289   PMID:26897025   PMID:26903501   PMID:26921468   PMID:26921474   PMID:26929452   PMID:26965371  
PMID:26968737   PMID:27097562   PMID:27122169   PMID:27142930   PMID:27217206   PMID:27226313   PMID:27390776   PMID:27432740   PMID:27480037   PMID:27498049   PMID:27519653   PMID:27580405  
PMID:27616714   PMID:27664421   PMID:27789228   PMID:27870829   PMID:27993979   PMID:28292423   PMID:28323616   PMID:28369449   PMID:28387983   PMID:28430012   PMID:28482867   PMID:28552735  
PMID:28560318   PMID:28671696   PMID:28687623   PMID:28687930   PMID:28822114   PMID:28827364   PMID:28860115   PMID:28882402   PMID:28906292   PMID:28994651   PMID:29093447   PMID:29101242  
PMID:29136627   PMID:29155075   PMID:29170629   PMID:29202929   PMID:29225050   PMID:29229864   PMID:29229865   PMID:29237740   PMID:29321139   PMID:29330353   PMID:29339534   PMID:29360039  
PMID:29361518   PMID:29378301   PMID:29609731   PMID:29636380   PMID:29689194   PMID:29712669   PMID:29751817   PMID:29768210   PMID:29845705   PMID:29874522   PMID:29874580   PMID:29889984  
PMID:29899142   PMID:29964182   PMID:30026494   PMID:30098998   PMID:30237242   PMID:30242130   PMID:30304535   PMID:30452456   PMID:30485810   PMID:30523785   PMID:30526858   PMID:30550785  
PMID:30562487   PMID:30573686   PMID:30597194   PMID:30626697   PMID:30659795   PMID:30734065   PMID:30814219   PMID:30824354   PMID:30858607   PMID:30862798   PMID:30929925   PMID:31062503  
PMID:31171776   PMID:31201155   PMID:31239441   PMID:31242446   PMID:31401143   PMID:31410202   PMID:31412026   PMID:31461654   PMID:31534052   PMID:31552487   PMID:31586065   PMID:31597917  
PMID:31776260   PMID:31871317   PMID:31949211   PMID:32001717   PMID:32059775   PMID:32109382   PMID:32113830   PMID:32150534   PMID:32179912   PMID:32236127   PMID:32238932   PMID:32325033  
PMID:32345129   PMID:32347164   PMID:32439762   PMID:32496646   PMID:32541013   PMID:32776381   PMID:32792525   PMID:32866472   PMID:32907846   PMID:33046507   PMID:33158935   PMID:33184034  
PMID:33328632   PMID:33462112   PMID:33500317   PMID:33526661   PMID:33605987   PMID:33622776   PMID:33760163  


Genomics

Comparative Map Data
Tjp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39764,945,913 - 65,177,629 (-)NCBIGRCm39mm39
GRCm39 Ensembl764,945,913 - 65,177,529 (-)Ensembl
GRCm38765,296,165 - 65,527,850 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,296,165 - 65,527,781 (-)EnsemblGRCm38mm10GRCm38
MGSCv37772,441,051 - 72,516,130 (-)NCBIGRCm37mm9NCBIm37
MGSCv36765,175,118 - 65,250,189 (-)NCBImm8
Celera762,713,602 - 62,789,529 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.02NCBI
TJP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1529,699,367 - 29,968,915 (-)EnsemblGRCh38hg38GRCh38
GRCh381529,699,367 - 29,969,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371529,991,571 - 30,261,252 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361527,779,648 - 27,901,998 (-)NCBINCBI36hg18NCBI36
Build 341527,779,650 - 27,901,998NCBI
Celera157,633,694 - 7,756,038 (-)NCBI
Cytogenetic Map15q13.1NCBI
HuRef157,657,688 - 7,779,970 (-)NCBIHuRef
CHM1_11529,958,950 - 30,081,290 (-)NCBICHM1_1
Tjp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21118,849,838 - 119,094,492 (-)NCBI
Rnor_6.0 Ensembl1126,146,489 - 126,227,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01126,146,489 - 126,515,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01127,243,076 - 127,607,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41119,684,774 - 119,750,532 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11119,763,121 - 119,845,891 (-)NCBI
Celera1111,069,963 - 111,134,894 (-)NCBICelera
Cytogenetic Map1q22NCBI
Tjp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,654,905 - 28,870,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,640,807 - 28,869,717 (+)NCBIChiLan1.0ChiLan1.0
TJP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11526,479,294 - 26,598,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1526,344,878 - 26,598,878 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v015981,198 - 1,249,292 (-)NCBIMhudiblu_PPA_v0panPan3
TJP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1338,997,122 - 39,076,617 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl338,997,076 - 39,241,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha341,683,799 - 41,794,039 (-)NCBI
ROS_Cfam_1.0339,375,018 - 39,624,615 (-)NCBI
UMICH_Zoey_3.1338,917,559 - 39,028,158 (-)NCBI
UNSW_CanFamBas_1.0339,155,559 - 39,266,003 (-)NCBI
UU_Cfam_GSD_1.0339,363,904 - 39,474,165 (-)NCBI
Tjp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640144,288,679 - 144,519,613 (+)NCBI
SpeTri2.0NW_0049364831,814,870 - 2,045,802 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TJP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1144,930,368 - 145,195,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11144,930,387 - 145,195,857 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21161,175,436 - 161,284,250 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TJP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12652,623,751 - 52,750,037 (-)NCBI
ChlSab1.1 Ensembl2652,622,743 - 52,749,950 (-)Ensembl
Vero_WHO_p1.0NW_02366604887,901,251 - 88,170,935 (+)NCBI
Tjp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247682,826,848 - 3,034,195 (-)NCBI

Position Markers
TJP1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37772,441,216 - 72,441,316UniSTSGRCm37
MGSCv37772,441,109 - 72,441,277UniSTSGRCm37
Celera762,713,660 - 62,713,828UniSTS
Celera762,713,767 - 62,713,867UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
cM Map728.5UniSTS
cM Map221.3UniSTS
cM Map728.5UniSTS
cM Map728.5UniSTS
cM Map728.5UniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38765,296,223 - 65,296,391UniSTSGRCm38
MGSCv37772,441,109 - 72,441,277UniSTSGRCm37
Celera762,713,660 - 62,713,828UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2BUniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Tjp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
TJP1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38765,296,330 - 65,296,430UniSTSGRCm38
MGSCv37772,441,216 - 72,441,316UniSTSGRCm37
Celera762,713,767 - 62,713,867UniSTS
Cytogenetic Map7CUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74560000079600000Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74750000074500000Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74873471382734859Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74950947983586207Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74954353083543642Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75147520685475345Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75147520685475345Mouse
13208555Lgth10_mbody length 10 (mouse)752000000126000000Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75250000086500000Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753600000143600000Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)755169841117223580Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75623976087493512Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)757300000134400000Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75767637391676604Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75767637391676604Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75767637391676604Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)762100000121800000Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)762100000124100000Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)762200000103100000Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76270000068100000Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76448567698485905Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:763
Count of miRNA genes:398
Interacting mature miRNAs:438
Transcripts:ENSMUST00000032729, ENSMUST00000102592, ENSMUST00000132036, ENSMUST00000144961
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP760988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ098724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032729   ⟹   ENSMUSP00000032729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,296,708 - 65,371,015 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102592   ⟹   ENSMUSP00000099652
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,296,165 - 65,371,239 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132036
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,297,504 - 65,302,305 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,340,223 - 65,342,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206228   ⟹   ENSMUSP00000145910
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,342,617 - 65,527,696 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,513,099 - 65,527,781 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206612   ⟹   ENSMUSP00000146149
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl765,296,708 - 65,371,015 (-)Ensembl
RefSeq Acc Id: NM_001163574   ⟹   NP_001157046
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,913 - 65,020,992 (-)NCBI
GRCm38765,296,165 - 65,371,244 (-)NCBI
MGSCv37772,441,051 - 72,516,130 (-)RGD
Celera762,713,602 - 62,789,529 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009386   ⟹   NP_033412
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,913 - 65,020,992 (-)NCBI
GRCm38765,296,165 - 65,371,244 (-)NCBI
MGSCv37772,441,051 - 72,516,130 (-)RGD
Celera762,713,602 - 62,789,529 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540778   ⟹   XP_006540841
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,913 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540779   ⟹   XP_006540842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
GRCm38765,296,365 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540780   ⟹   XP_006540843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,913 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540781   ⟹   XP_006540844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540782   ⟹   XP_006540845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540783   ⟹   XP_006540846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,917 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540784   ⟹   XP_006540847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,917 - 65,021,429 (-)NCBI
GRCm38765,296,165 - 65,371,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540785   ⟹   XP_006540848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,917 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006540786   ⟹   XP_006540849
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
GRCm38765,296,165 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250843   ⟹   XP_011249145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
GRCm38765,296,365 - 65,527,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242356   ⟹   XP_030098216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,917 - 65,166,599 (-)NCBI
GRCm38765,296,165 - 65,516,851 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152891   ⟹   XP_036008784
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,913 - 65,021,429 (-)NCBI
RefSeq Acc Id: XM_036152892   ⟹   XP_036008785
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,177,629 (-)NCBI
RefSeq Acc Id: XM_036152893   ⟹   XP_036008786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,945,917 - 65,021,429 (-)NCBI
RefSeq Acc Id: XM_036152894   ⟹   XP_036008787
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,021,429 (-)NCBI
RefSeq Acc Id: XM_036152895   ⟹   XP_036008788
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39764,946,113 - 65,021,429 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_033412   ⟸   NM_009386
- Peptide Label: isoform 1
- UniProtKB: P39447 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157046   ⟸   NM_001163574
- Peptide Label: isoform 2
- UniProtKB: B9EHJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006540846   ⟸   XM_006540783
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006540845   ⟸   XM_006540782
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006540843   ⟸   XM_006540780
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006540844   ⟸   XM_006540781
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006540842   ⟸   XM_006540779
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006540841   ⟸   XM_006540778
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006540849   ⟸   XM_006540786
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006540848   ⟸   XM_006540785
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006540847   ⟸   XM_006540784
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011249145   ⟸   XM_011250843
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030098216   ⟸   XM_030242356
- Peptide Label: isoform X10
RefSeq Acc Id: ENSMUSP00000032729   ⟸   ENSMUST00000032729
RefSeq Acc Id: ENSMUSP00000146149   ⟸   ENSMUST00000206612
RefSeq Acc Id: ENSMUSP00000145910   ⟸   ENSMUST00000206228
RefSeq Acc Id: ENSMUSP00000099652   ⟸   ENSMUST00000102592
RefSeq Acc Id: XP_036008784   ⟸   XM_036152891
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036008786   ⟸   XM_036152893
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036008785   ⟸   XM_036152892
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036008788   ⟸   XM_036152895
- Peptide Label: isoform X16
RefSeq Acc Id: XP_036008787   ⟸   XM_036152894
- Peptide Label: isoform X15
Protein Domains
Guanylate kinase-like   PDZ   SH3   ZU5

Promoters
RGD ID:8664361
Promoter ID:EPDNEW_M10211
Type:multiple initiation site
Name:Tjp1_2
Description:Mus musculus tight junction protein 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10212  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38765,370,922 - 65,370,982EPDNEW
RGD ID:8664363
Promoter ID:EPDNEW_M10212
Type:initiation region
Name:Tjp1_1
Description:Mus musculus tight junction protein 1 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10211  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38765,371,269 - 65,371,329EPDNEW
RGD ID:6842184
Promoter ID:MM_KWN:50925
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000039674
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,446,784 - 72,447,284 (-)MPROMDB
RGD ID:6842193
Promoter ID:MM_KWN:50926
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC009HGO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,457,561 - 72,459,087 (-)MPROMDB
RGD ID:6842188
Promoter ID:MM_KWN:50927
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   MEF_B6
Transcripts:OTTMUST00000039676
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,459,586 - 72,460,832 (-)MPROMDB
RGD ID:6842189
Promoter ID:MM_KWN:50929
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B6
Transcripts:OTTMUST00000039675
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,487,626 - 72,488,632 (-)MPROMDB
RGD ID:6842186
Promoter ID:MM_KWN:50931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001163574,   OTTMUST00000039673
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,515,899 - 72,516,399 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98759 AgrOrtholog
Ensembl Genes ENSMUSG00000030516 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032729 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000099652 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145910 UniProtKB/TrEMBL
  ENSMUSP00000146149 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032729 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000102592 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000206228 UniProtKB/TrEMBL
  ENSMUST00000206612 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GK/Ca_channel_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanylate_kin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPR005417 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZO-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZO-1_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21872 UniProtKB/Swiss-Prot
MGD MGI:98759 ENTREZGENE
NCBI Gene 21872 ENTREZGENE
PANTHER PTHR13865:SF25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Guanylate_kin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tjp1 PhenoGen
PRINTS ZONOCCLUDNS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZONOCCLUDNS1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GUANYLATE_KINASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GuKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZU5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RPB2_MOUSE UniProtKB/TrEMBL
  A0A0U1RPW2_MOUSE UniProtKB/TrEMBL
  B9EHJ3 ENTREZGENE, UniProtKB/TrEMBL
  P39447 ENTREZGENE
  Q91YW2_MOUSE UniProtKB/TrEMBL
  ZO1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9QK00 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-20 Tjp1  tight junction protein 1  Gm1693  predicted gene 1693  Data Merged 737654 PROVISIONAL