Nedd9 (neural precursor cell expressed, developmentally down-regulated gene 9) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Nedd9 (neural precursor cell expressed, developmentally down-regulated gene 9) Mus musculus
Analyze
Symbol: Nedd9
Name: neural precursor cell expressed, developmentally down-regulated gene 9
RGD ID: 1314804
MGI Page MGI
Description: Predicted to enable protein tyrosine kinase binding activity. Involved in several processes, including positive regulation of dendritic spine maintenance; positive regulation of immunological synapse formation; and regulation of cell migration. Acts upstream of or within activation of GTPase activity. Located in immunological synapse; nucleus; and spindle pole. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb mesenchyme; and nose. Orthologous to human NEDD9 (neural precursor cell expressed, developmentally down-regulated 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C; Ca; Cas-L; CasL; Crk-associated substrate lymphocyte-specific protein; CRK-associated substrate-related protein; E230025G09Rik; enhancer of filamentation 1; HEF1; MEF1; Nedd-9; neural precursor cell expressed developmentally down-regulated protein 9; p105
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,463,392 - 41,640,836 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,463,057 - 41,640,838 (-)EnsemblGRCm39 Ensembl
GRCm381341,309,916 - 41,487,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,309,581 - 41,487,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371341,405,285 - 41,582,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,320,960 - 41,498,261 (-)NCBIMGSCv36mm8
Celera1342,392,251 - 42,568,113 (-)NCBICelera
Cytogenetic Map13A3.3- A4NCBI
cM Map1320.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-4,6-dinitrotoluene  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acetamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chloroacetaldehyde  (ISO)
chloroprene  (EXP)
chlorpromazine  (ISO)
choline  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethylbenzene  (ISO)
etoposide  (ISO)
fenofibrate  (ISO)
fenthion  (EXP)
ferric oxide  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glycidol  (ISO)
GW 501516  (ISO)
ibuprofen  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isorhapontigenin  (ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
levofloxacin  (ISO)
lipopolysaccharide  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP)
o-xylene  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tacedinaline  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
trametinib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triticonazole  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
tungsten  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:1378265   PMID:10349636   PMID:10692442   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12517963   PMID:12522270   PMID:15489334   PMID:15890332   PMID:16141072  
PMID:16141073   PMID:16148091   PMID:16210561   PMID:16214126   PMID:16537572   PMID:16964442   PMID:18282814   PMID:18585997   PMID:19275884   PMID:19376971   PMID:19464348   PMID:19521500  
PMID:19538736   PMID:19738060   PMID:20442405   PMID:20697350   PMID:20940402   PMID:20956287   PMID:21267068   PMID:21765937   PMID:21848808   PMID:21873635   PMID:22347397   PMID:22509381  
PMID:22832659   PMID:23318423   PMID:23874939   PMID:24559672   PMID:24574519   PMID:25059660   PMID:25120220   PMID:25139996   PMID:25621495   PMID:25847598   PMID:26324022   PMID:26683084  
PMID:27336669   PMID:27359298   PMID:29662228   PMID:29899023   PMID:30446775   PMID:30728831   PMID:32325033   PMID:34006524   PMID:34321999   PMID:35523865   PMID:37540708  


Genomics

Comparative Map Data
Nedd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,463,392 - 41,640,836 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,463,057 - 41,640,838 (-)EnsemblGRCm39 Ensembl
GRCm381341,309,916 - 41,487,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,309,581 - 41,487,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371341,405,285 - 41,582,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,320,960 - 41,498,261 (-)NCBIMGSCv36mm8
Celera1342,392,251 - 42,568,113 (-)NCBICelera
Cytogenetic Map13A3.3- A4NCBI
cM Map1320.43NCBI
NEDD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38611,183,298 - 11,382,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl611,183,298 - 11,382,348 (-)EnsemblGRCh38hg38GRCh38
GRCh37611,183,531 - 11,382,581 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36611,291,519 - 11,340,887 (-)NCBINCBI36Build 36hg18NCBI36
Celera612,411,994 - 12,611,049 (-)NCBICelera
Cytogenetic Map6p24.2NCBI
HuRef611,114,819 - 11,313,849 (-)NCBIHuRef
CHM1_1611,185,979 - 11,385,008 (-)NCBICHM1_1
T2T-CHM13v2.0611,051,218 - 11,250,286 (-)NCBIT2T-CHM13v2.0
Nedd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81723,495,531 - 23,673,780 (+)NCBIGRCr8
mRatBN7.21723,289,793 - 23,468,026 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,282,326 - 23,468,019 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,287,211 - 23,337,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01724,890,899 - 24,940,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,228,163 - 23,277,968 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01722,984,792 - 23,179,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1722,984,844 - 23,179,701 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01725,019,957 - 25,143,758 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,304,750 - 29,354,613 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11729,307,590 - 29,357,454 (+)NCBI
Celera1723,088,684 - 23,138,480 (+)NCBICelera
Cytogenetic Map17p12NCBI
Nedd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554653,129,707 - 3,282,632 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554653,101,409 - 3,281,481 (+)NCBIChiLan1.0ChiLan1.0
NEDD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,830,897 - 25,880,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,820,942 - 21,870,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0611,022,321 - 11,071,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1611,297,701 - 11,346,973 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl611,297,701 - 11,420,186 (-)Ensemblpanpan1.1panPan2
NEDD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,852,334 - 11,033,656 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,854,295 - 10,964,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,801,380 - 10,984,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,954,569 - 11,138,759 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,954,585 - 11,138,702 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,785,077 - 10,968,606 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,833,555 - 11,017,186 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03512,155,116 - 12,341,102 (-)NCBIUU_Cfam_GSD_1.0
Nedd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,448,398 - 13,594,214 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365341,760,142 - 1,863,565 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365341,816,755 - 1,863,200 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEDD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,807,044 - 7,914,061 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,807,042 - 8,093,553 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.278,268,188 - 8,442,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEDD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11760,759,411 - 60,959,558 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1760,911,264 - 60,959,603 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604411,216,443 - 11,417,455 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nedd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475614,737,054 - 14,850,708 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475614,663,114 - 14,850,132 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nedd9
5395 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1008
Count of miRNA genes:354
Interacting mature miRNAs:419
Transcripts:ENSMUST00000021794, ENSMUST00000163623
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse

Markers in Region
Nedd9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371341,407,050 - 41,407,393UniSTSGRCm37
Celera1342,394,016 - 42,394,405UniSTS
Cytogenetic Map13A3.3-A4UniSTS
cM Map13 UniSTS
D13Mit118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381341,457,333 - 41,457,480UniSTSGRCm38
MGSCv371341,552,702 - 41,552,849UniSTSGRCm37
Celera1342,538,068 - 42,538,215UniSTS
Cytogenetic Map13A3.3-A4UniSTS
cM Map1324.0UniSTS
Whitehead Genetic1314.2UniSTS
Whitehead_YAC13 UniSTS
Nedd9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381341,311,681 - 41,312,024UniSTSGRCm38
MGSCv371341,407,050 - 41,407,393UniSTSGRCm37
Celera1342,394,016 - 42,394,405UniSTS
Cytogenetic Map13A3.3-A4UniSTS
cM Map13 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA198880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA762918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC167669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02139064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF009366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV367231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB842569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY001380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D10919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000021794   ⟹   ENSMUSP00000021794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,463,057 - 41,640,769 (-)Ensembl
GRCm38.p6 Ensembl1341,309,581 - 41,487,293 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163623   ⟹   ENSMUSP00000125773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,463,396 - 41,512,723 (-)Ensembl
GRCm38.p6 Ensembl1341,309,920 - 41,359,247 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,585,779 - 41,640,838 (-)Ensembl
GRCm38.p6 Ensembl1341,432,303 - 41,487,362 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224803   ⟹   ENSMUSP00000152937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,471,396 - 41,513,215 (-)Ensembl
GRCm38.p6 Ensembl1341,317,920 - 41,359,739 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,491,292 - 41,640,718 (-)Ensembl
GRCm38.p6 Ensembl1341,337,816 - 41,487,242 (-)Ensembl
Ensembl Acc Id: ENSMUST00000225297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1341,594,581 - 41,640,836 (-)Ensembl
GRCm38.p6 Ensembl1341,441,105 - 41,487,360 (-)Ensembl
RefSeq Acc Id: NM_001111324   ⟹   NP_001104794
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391341,463,392 - 41,640,836 (-)NCBI
GRCm381341,309,916 - 41,487,360 (-)NCBI
MGSCv371341,405,285 - 41,582,689 (-)RGD
Celera1342,392,251 - 42,568,153 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_017464   ⟹   NP_059492
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391341,463,392 - 41,512,477 (-)NCBI
GRCm381341,309,916 - 41,359,001 (-)NCBI
MGSCv371341,405,285 - 41,582,689 (-)RGD
Celera1342,392,251 - 42,568,153 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036157901   ⟹   XP_036013794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391341,463,459 - 41,525,695 (-)NCBI
Sequence:
RefSeq Acc Id: NP_059492   ⟸   NM_017464
- Peptide Label: isoform 2
- UniProtKB: A0A0R4J212 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104794   ⟸   NM_001111324
- Peptide Label: isoform 1
- UniProtKB: Q8BMI9 (UniProtKB/Swiss-Prot),   Q8BM94 (UniProtKB/Swiss-Prot),   Q8BL52 (UniProtKB/Swiss-Prot),   Q8BK90 (UniProtKB/Swiss-Prot),   Q8BJL8 (UniProtKB/Swiss-Prot),   Q99KE7 (UniProtKB/Swiss-Prot),   O35177 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000125773   ⟸   ENSMUST00000163623
Ensembl Acc Id: ENSMUSP00000152937   ⟸   ENSMUST00000224803
Ensembl Acc Id: ENSMUSP00000021794   ⟸   ENSMUST00000021794
RefSeq Acc Id: XP_036013794   ⟸   XM_036157901
- Peptide Label: isoform X1
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35177-F1-model_v2 AlphaFold O35177 1-833 view protein structure

Promoters
RGD ID:8680174
Promoter ID:EPDNEW_M18118
Type:multiple initiation site
Name:Nedd9_1
Description:Mus musculus neural precursor cell expressed, developmentallydown-regulated gene 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18119  EPDNEW_M18120  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381341,358,999 - 41,359,059EPDNEW
RGD ID:6824181
Promoter ID:MM_KWN:13901
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_017464
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361341,454,031 - 41,454,531 (-)MPROMDB
RGD ID:8680176
Promoter ID:EPDNEW_M18119
Type:single initiation site
Name:Nedd9_3
Description:Mus musculus neural precursor cell expressed, developmentallydown-regulated gene 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18118  EPDNEW_M18120  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381341,454,479 - 41,454,539EPDNEW
RGD ID:8680178
Promoter ID:EPDNEW_M18120
Type:initiation region
Name:Nedd9_2
Description:Mus musculus neural precursor cell expressed, developmentallydown-regulated gene 9 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18118  EPDNEW_M18119  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381341,487,320 - 41,487,380EPDNEW
RGD ID:6824180
Promoter ID:MM_KWN:13904
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   Spleen
Transcripts:NM_001111324
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361341,582,274 - 41,582,774 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97302 AgrOrtholog
Ensembl Genes ENSMUSG00000021365 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021794 ENTREZGENE
  ENSMUST00000021794.14 UniProtKB/Swiss-Prot
  ENSMUST00000163623 ENTREZGENE
Gene3D-CATH 1.20.120.830 UniProtKB/Swiss-Prot
  Alpha-catenin/vinculin-like UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro CAS_C UniProtKB/Swiss-Prot
  CAS_fam UniProtKB/Swiss-Prot
  NEDD9_SH3 UniProtKB/Swiss-Prot
  Serine_rich_dom UniProtKB/Swiss-Prot
  Serine_rich_sf UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:18003 UniProtKB/Swiss-Prot
MGD MGI:97302 ENTREZGENE
NCBI Gene 18003 ENTREZGENE
PANTHER ENHANCER OF FILAMENTATION 1 UniProtKB/Swiss-Prot
  PTHR10654 UniProtKB/Swiss-Prot
Pfam CAS_C UniProtKB/Swiss-Prot
  Serine_rich UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
PhenoGen Nedd9 PhenoGen
PROSITE SH3 UniProtKB/Swiss-Prot
SMART SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50044 UniProtKB/Swiss-Prot
UniProt A0A0R4J212 ENTREZGENE, UniProtKB/TrEMBL
  A0A286YCE4_MOUSE UniProtKB/TrEMBL
  CASL_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BJL8 ENTREZGENE
  Q8BK90 ENTREZGENE
  Q8BL52 ENTREZGENE
  Q8BM94 ENTREZGENE
  Q8BMI9 ENTREZGENE
  Q99KE7 ENTREZGENE
UniProt Secondary Q8BJL8 UniProtKB/Swiss-Prot
  Q8BK90 UniProtKB/Swiss-Prot
  Q8BL52 UniProtKB/Swiss-Prot
  Q8BM94 UniProtKB/Swiss-Prot
  Q8BMI9 UniProtKB/Swiss-Prot
  Q99KE7 UniProtKB/Swiss-Prot