Slamf8 (SLAM family member 8) - Rat Genome Database

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Gene: Slamf8 (SLAM family member 8) Mus musculus
Analyze
Symbol: Slamf8
Name: SLAM family member 8
RGD ID: 1314783
MGI Page MGI
Description: Enables identical protein binding activity and signaling receptor activity. Involved in B-1 B cell lineage commitment and regulation of B cell differentiation. Acts upstream of or within several processes, including leukocyte chemotaxis involved in inflammatory response; negative regulation of leukocyte migration; and negative regulation of respiratory burst involved in inflammatory response. Predicted to be located in membrane. Orthologous to human SLAMF8 (SLAM family member 8).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 5830408F06Rik; B lymphocyte activator macrophage expressed; B-lymphocyte activator macrophage expressed; Bla; Blame; SBBI; SBBI42
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,408,944 - 172,418,482 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,409,325 - 172,418,135 (-)EnsemblGRCm39 Ensembl
GRCm381172,581,377 - 172,590,873 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,581,758 - 172,590,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,511,508 - 174,520,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,418,433 - 174,427,163 (-)NCBIMGSCv36mm8
Celera1175,435,779 - 175,444,985 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11313408   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:20562862   PMID:21873635   PMID:22593622   PMID:24795728  
PMID:25799045   PMID:30552382   PMID:35259711   PMID:35837407  


Genomics

Comparative Map Data
Slamf8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,408,944 - 172,418,482 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,409,325 - 172,418,135 (-)EnsemblGRCm39 Ensembl
GRCm381172,581,377 - 172,590,873 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,581,758 - 172,590,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,511,508 - 174,520,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,418,433 - 174,427,163 (-)NCBIMGSCv36mm8
Celera1175,435,779 - 175,444,985 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.99NCBI
SLAMF8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,826,873 - 159,837,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,826,811 - 159,837,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,796,663 - 159,807,282 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,063,103 - 158,073,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 341156,609,673 - 156,620,354NCBI
Celera1132,864,904 - 132,875,709 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1131,152,909 - 131,163,714 (+)NCBIHuRef
CHM1_11161,191,825 - 161,202,629 (+)NCBICHM1_1
T2T-CHM13v2.01158,963,866 - 158,974,492 (+)NCBIT2T-CHM13v2.0
Slamf8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81387,580,081 - 87,589,941 (-)NCBIGRCr8
mRatBN7.21385,047,729 - 85,057,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,047,727 - 85,057,211 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1387,551,280 - 87,560,366 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,951,551 - 88,960,639 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,136,289 - 86,145,381 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,967,862 - 90,978,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,967,739 - 90,977,734 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01395,487,053 - 95,497,327 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41388,586,512 - 88,596,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11388,764,354 - 88,785,176 (-)NCBI
Celera1384,657,034 - 84,666,075 (-)NCBICelera
Cytogenetic Map13q24NCBI
Slamf8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,623,197 - 11,632,573 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546811,623,092 - 11,632,566 (+)NCBIChiLan1.0ChiLan1.0
SLAMF8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,017,255 - 90,027,775 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,757,279 - 89,767,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,178,241 - 135,189,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,098,929 - 139,109,725 (+)NCBIpanpan1.1PanPan1.1panPan2
SLAMF8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,299,455 - 22,307,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,300,128 - 22,307,096 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,376,851 - 22,384,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,422,349 - 22,430,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,422,105 - 22,430,377 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03822,721,713 - 22,729,848 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,132,591 - 23,140,763 (-)NCBIUU_Cfam_GSD_1.0
Slamf8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,968,095 - 5,978,925 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936740776,455 - 786,357 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936740776,557 - 786,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLAMF8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl490,661,985 - 90,672,572 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1490,661,984 - 90,673,044 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2498,822,988 - 98,834,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103223747
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,114,403 - 4,127,122 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl204,116,630 - 4,124,988 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660383,218,491 - 3,230,109 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slamf8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247941,418,228 - 1,429,561 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247941,418,727 - 1,428,836 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slamf8
474 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:371
Count of miRNA genes:262
Interacting mature miRNAs:293
Transcripts:ENSMUST00000065679
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169038741174456436Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
13207587Mwmlpt1_mMorris water maze latency to platform, training, 1 (mouse)1169597438173397435Mouse
13207591Mwmlpa1_mMorris water maze latency to platform, all, 1 (mouse)1169797438173297435Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
38456000Lick2_mlick rate 2, sucralose (mouse)1170397438173397435Mouse
38456001Lick1_mlick rate 1, water (mouse)1170397438173397435Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
4142417Emrq1_memotional reactivity QTL 1 (mouse)Not determined171632048172716369Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000065679   ⟹   ENSMUSP00000067527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,409,325 - 172,418,135 (-)Ensembl
GRCm38.p6 Ensembl1172,581,758 - 172,590,568 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,416,546 - 172,418,016 (-)Ensembl
GRCm38.p6 Ensembl1172,588,979 - 172,590,449 (-)Ensembl
RefSeq Acc Id: NM_029084   ⟹   NP_083360
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,408,944 - 172,418,135 (-)NCBI
GRCm381172,581,377 - 172,590,568 (-)NCBI
MGSCv371174,511,508 - 174,520,699 (-)RGD
Celera1175,435,779 - 175,444,985 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497009   ⟹   XP_006497072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,409,251 - 172,418,482 (-)NCBI
GRCm381172,581,758 - 172,590,873 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083360   ⟸   NM_029084
- Peptide Label: precursor
- UniProtKB: Q8R3T7 (UniProtKB/Swiss-Prot),   Q9D3G2 (UniProtKB/Swiss-Prot),   Q3UQA2 (UniProtKB/TrEMBL),   Q3U1C3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497072   ⟸   XM_006497009
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000067527   ⟸   ENSMUST00000065679
Protein Domains
Ig-like   Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3G2-F1-model_v2 AlphaFold Q9D3G2 1-278 view protein structure

Promoters
RGD ID:6875864
Promoter ID:EPDNEW_M1339
Type:initiation region
Name:Slamf8_1
Description:Mus musculus SLAM family member 8 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,590,538 - 172,590,598EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921998 AgrOrtholog
Ensembl Genes ENSMUSG00000053318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065679 ENTREZGENE
  ENSMUST00000065679.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74748 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921998 ENTREZGENE
NCBI Gene 74748 ENTREZGENE
PANTHER SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLAM FAMILY MEMBER 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slamf8 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q18PH1_MOUSE UniProtKB/TrEMBL
  Q3U1C3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UQA2 ENTREZGENE, UniProtKB/TrEMBL
  Q8R3T7 ENTREZGENE
  Q9D3G2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8R3T7 UniProtKB/Swiss-Prot