Sass6 (SAS-6 centriolar assembly protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Sass6 (SAS-6 centriolar assembly protein) Mus musculus
Analyze
Symbol: Sass6
Name: SAS-6 centriolar assembly protein
RGD ID: 1314771
MGI Page MGI
Description: Predicted to be involved in centriole replication; positive regulation of cell cycle process; and spermatogenesis. Located in centriole and deuterosome. Is expressed in brain ventricular layer; cerebral cortex subventricular zone; and retina. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810453L12Rik; SAS-6; spindle assembly 6 homolog; spindle assembly abnormal protein 6 homolog; spindle assembly defective protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,388,577 - 116,424,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,388,631 - 116,424,653 (+)EnsemblGRCm39 Ensembl
GRCm383116,594,938 - 116,630,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,594,982 - 116,631,004 (+)EnsemblGRCm38mm10GRCm38
MGSCv373116,297,926 - 116,333,902 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,587,012 - 116,621,151 (+)NCBIMGSCv36mm8
Celera3123,022,163 - 123,057,932 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IBA,IDA,ISO)
centrosome  (IBA,ISO,ISS)
cytoplasm  (ISO)
cytoskeleton  (IEA)
deuterosome  (IDA)
procentriole replication complex  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:17576815   PMID:18799693   PMID:20360068   PMID:21267068   PMID:21873635   PMID:22349705   PMID:24075808   PMID:24421332   PMID:26410627   PMID:26496610   PMID:33798452   PMID:36973253  
PMID:37890489   PMID:38407237  


Genomics

Comparative Map Data
Sass6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,388,577 - 116,424,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,388,631 - 116,424,653 (+)EnsemblGRCm39 Ensembl
GRCm383116,594,938 - 116,630,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,594,982 - 116,631,004 (+)EnsemblGRCm38mm10GRCm38
MGSCv373116,297,926 - 116,333,902 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,587,012 - 116,621,151 (+)NCBIMGSCv36mm8
Celera3123,022,163 - 123,057,932 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.4NCBI
SASS6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,083,570 - 100,132,930 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,083,563 - 100,132,955 (-)EnsemblGRCh38hg38GRCh38
GRCh371100,549,126 - 100,598,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,321,688 - 100,371,099 (-)NCBINCBI36Build 36hg18NCBI36
Celera198,805,981 - 98,855,389 (-)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,671,854 - 98,721,264 (-)NCBIHuRef
CHM1_11100,665,439 - 100,714,865 (-)NCBICHM1_1
T2T-CHM13v2.0199,931,689 - 99,981,045 (-)NCBIT2T-CHM13v2.0
Sass6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,231,896 - 207,263,840 (+)NCBIGRCr8
mRatBN7.22204,546,660 - 204,578,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,546,660 - 204,578,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2212,203,668 - 212,227,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,112,851 - 210,136,947 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,929,924 - 204,954,021 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,626,851 - 219,660,975 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,628,695 - 219,652,968 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,557,441 - 237,588,679 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,825,474 - 212,849,747 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,788,526 - 212,818,898 (+)NCBI
Celera2197,038,483 - 197,062,724 (+)NCBICelera
Cytogenetic Map2q42NCBI
Sass6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554354,832,284 - 4,879,010 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554354,832,284 - 4,876,077 (-)NCBIChiLan1.0ChiLan1.0
SASS6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,894,888 - 126,944,006 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11126,052,966 - 126,102,037 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,741,808 - 102,790,850 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,457,559 - 101,506,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,459,348 - 101,506,072 (-)Ensemblpanpan1.1panPan2
SASS6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,859,597 - 49,902,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,859,182 - 49,900,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,532,393 - 52,575,607 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0650,209,089 - 50,252,236 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,209,170 - 50,252,236 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,900,764 - 49,943,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,879,765 - 49,922,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,311,435 - 50,354,653 (+)NCBIUU_Cfam_GSD_1.0
Sass6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,442,855 - 110,484,777 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748249,934 - 289,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748249,216 - 290,062 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SASS6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,985,759 - 118,050,040 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,985,599 - 118,049,129 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SASS6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,205,538 - 33,254,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2033,205,742 - 33,257,170 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603824,802,894 - 24,852,018 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sass6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248572,882,133 - 2,930,508 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248572,872,335 - 2,930,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sass6
1352 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:565
Count of miRNA genes:415
Interacting mature miRNAs:468
Transcripts:ENSMUST00000029571
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB617231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ174648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029571   ⟹   ENSMUSP00000029571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,388,661 - 116,424,653 (+)Ensembl
GRCm38.p6 Ensembl3116,595,012 - 116,631,004 (+)Ensembl
Ensembl Acc Id: ENSMUST00000196619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,406,985 - 116,413,748 (+)Ensembl
GRCm38.p6 Ensembl3116,613,336 - 116,620,099 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,415,108 - 116,421,210 (+)Ensembl
GRCm38.p6 Ensembl3116,621,459 - 116,627,561 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197335   ⟹   ENSMUSP00000143123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,388,659 - 116,422,913 (+)Ensembl
GRCm38.p6 Ensembl3116,595,010 - 116,629,264 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198311   ⟹   ENSMUSP00000143233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,388,657 - 116,422,796 (+)Ensembl
GRCm38.p6 Ensembl3116,595,008 - 116,629,147 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198386   ⟹   ENSMUSP00000143175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,388,631 - 116,415,251 (+)Ensembl
GRCm38.p6 Ensembl3116,594,982 - 116,621,602 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,388,652 - 116,398,890 (+)Ensembl
GRCm38.p6 Ensembl3116,595,003 - 116,605,241 (+)Ensembl
Ensembl Acc Id: ENSMUST00000198747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,419,572 - 116,422,781 (+)Ensembl
GRCm38.p6 Ensembl3116,625,923 - 116,629,132 (+)Ensembl
RefSeq Acc Id: NM_001289568   ⟹   NP_001276497
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,607 - 116,424,635 (+)NCBI
GRCm383116,594,958 - 116,630,986 (+)NCBI
Celera3123,022,113 - 123,057,934 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289571   ⟹   NP_001276500
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,607 - 116,424,635 (+)NCBI
GRCm383116,594,958 - 116,630,986 (+)NCBI
Celera3123,022,113 - 123,057,934 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028349   ⟹   NP_082625
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,607 - 116,424,635 (+)NCBI
GRCm383116,594,958 - 116,630,986 (+)NCBI
MGSCv373116,297,926 - 116,333,902 (+)RGD
Celera3123,022,113 - 123,057,934 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502140   ⟹   XP_006502203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,577 - 116,424,816 (+)NCBI
GRCm383116,594,938 - 116,630,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502141   ⟹   XP_006502204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,577 - 116,422,784 (+)NCBI
GRCm383116,594,938 - 116,630,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163351   ⟹   XP_036019244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,388,577 - 116,422,784 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082625   ⟸   NM_028349
- Peptide Label: isoform 1
- UniProtKB: Q9CYT4 (UniProtKB/Swiss-Prot),   Q80UK7 (UniProtKB/Swiss-Prot),   Q3UM73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502203   ⟸   XM_006502140
- Peptide Label: isoform X1
- UniProtKB: Q3UM73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502204   ⟸   XM_006502141
- Peptide Label: isoform X2
- UniProtKB: Q3UM73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276497   ⟸   NM_001289568
- Peptide Label: isoform 3
- UniProtKB: Q3UM73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276500   ⟸   NM_001289571
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JFC9 (UniProtKB/TrEMBL),   Q3UM73 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000143175   ⟸   ENSMUST00000198386
Ensembl Acc Id: ENSMUSP00000143233   ⟸   ENSMUST00000198311
Ensembl Acc Id: ENSMUSP00000143123   ⟸   ENSMUST00000197335
Ensembl Acc Id: ENSMUSP00000029571   ⟸   ENSMUST00000029571
RefSeq Acc Id: XP_036019244   ⟸   XM_036163351
- Peptide Label: isoform X3
- UniProtKB: Q3UM73 (UniProtKB/TrEMBL)
Protein Domains
PISA   SAS-6 coiled-coil   Spindle assembly abnormal protein 6 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UK7-F1-model_v2 AlphaFold Q80UK7 1-654 view protein structure

Promoters
RGD ID:6882178
Promoter ID:EPDNEW_M4540
Type:initiation region
Name:Sass6_1
Description:Mus musculus SAS-6 centriolar assembly protein , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4541  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,595,010 - 116,595,070EPDNEW
RGD ID:6882180
Promoter ID:EPDNEW_M4541
Type:initiation region
Name:Sass6_2
Description:Mus musculus SAS-6 centriolar assembly protein , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4540  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,598,193 - 116,598,253EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920026 AgrOrtholog
Ensembl Genes ENSMUSG00000027959 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029571.13 UniProtKB/TrEMBL
  ENSMUST00000197335 ENTREZGENE
  ENSMUST00000197335.2 UniProtKB/TrEMBL
  ENSMUST00000198311 ENTREZGENE
  ENSMUST00000198311.5 UniProtKB/Swiss-Prot
  ENSMUST00000198386 ENTREZGENE
  ENSMUST00000198386.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  2.170.210.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SAS-6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAS-6_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAS6_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72776 UniProtKB/Swiss-Prot
MGD MGI:1920026 ENTREZGENE
NCBI Gene 72776 ENTREZGENE
PANTHER SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/Swiss-Prot
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/Swiss-Prot
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/TrEMBL
  SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG UniProtKB/TrEMBL
Pfam SAS-6_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sas6_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sass6 PhenoGen
UniProt A0A0G2JFC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A140T8I7_MOUSE UniProtKB/TrEMBL
  Q3UM73 ENTREZGENE, UniProtKB/TrEMBL
  Q80UK7 ENTREZGENE
  Q9CYT4 ENTREZGENE
  SAS6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9CYT4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Sass6  SAS-6 centriolar assembly protein    spindle assembly 6 homolog (C. elegans)  Symbol and/or name change 5135510 APPROVED