Gtsf1l (gametocyte specific factor 1-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gtsf1l (gametocyte specific factor 1-like) Mus musculus
Analyze
Symbol: Gtsf1l
Name: gametocyte specific factor 1-like
RGD ID: 1314720
MGI Page MGI
Description: Predicted to enable metal ion binding activity. Is expressed in several structures, including genitourinary system; gut; hemolymphoid system gland; liver; and lung. Orthologous to human GTSF1L (gametocyte specific factor 1 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410116G06Rik; gametocyte-specific factor 1-like; RP23-335N12.6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392162,928,956 - 162,931,529 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2162,928,954 - 162,929,775 (-)EnsemblGRCm39 Ensembl
GRCm382163,087,031 - 163,089,601 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2163,087,034 - 163,087,855 (-)EnsemblGRCm38mm10GRCm38
MGSCv372162,912,767 - 162,915,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362162,778,472 - 162,781,042 (-)NCBIMGSCv36mm8
Celera2169,033,664 - 169,036,234 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map284.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17919994   PMID:26930067  


Genomics

Comparative Map Data
Gtsf1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392162,928,956 - 162,931,529 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2162,928,954 - 162,929,775 (-)EnsemblGRCm39 Ensembl
GRCm382163,087,031 - 163,089,601 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2163,087,034 - 163,087,855 (-)EnsemblGRCm38mm10GRCm38
MGSCv372162,912,767 - 162,915,337 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362162,778,472 - 162,781,042 (-)NCBIMGSCv36mm8
Celera2169,033,664 - 169,036,234 (-)NCBICelera
Cytogenetic Map2H2NCBI
cM Map284.04NCBI
GTSF1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382043,726,164 - 43,727,002 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2043,726,164 - 43,727,002 (-)EnsemblGRCh38hg38GRCh38
GRCh372042,354,804 - 42,355,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362041,788,215 - 41,789,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 342041,788,214 - 41,789,056NCBI
Celera2039,062,229 - 39,063,070 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2039,090,152 - 39,090,993 (-)NCBIHuRef
CHM1_12042,258,473 - 42,259,314 (-)NCBICHM1_1
T2T-CHM13v2.02045,459,361 - 45,460,212 (-)NCBIT2T-CHM13v2.0
Gtsf1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83172,155,533 - 172,158,228 (-)NCBIGRCr8
mRatBN7.23151,736,020 - 151,738,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3151,735,997 - 151,736,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3155,543,880 - 155,546,583 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03164,042,829 - 164,045,532 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03161,786,430 - 161,789,133 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03159,452,355 - 159,453,243 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03165,647,921 - 165,648,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43153,956,635 - 153,957,353 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13153,862,739 - 153,863,196 (-)NCBI
Celera3150,393,338 - 150,394,226 (-)NCBICelera
Cytogenetic Map3q42NCBI
Gtsf1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544513,487,498 - 13,488,284 (+)NCBIChiLan1.0ChiLan1.0
GTSF1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22149,461,804 - 49,467,897 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12049,454,905 - 49,460,998 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02040,062,989 - 40,064,097 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12041,156,470 - 41,157,313 (-)NCBIpanpan1.1PanPan1.1panPan2
GTSF1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12431,394,825 - 31,395,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2431,394,627 - 31,395,377 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2431,038,050 - 31,038,961 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02432,102,029 - 32,102,940 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12431,366,087 - 31,367,001 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02431,477,455 - 31,478,366 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02432,018,524 - 32,019,435 (-)NCBIUU_Cfam_GSD_1.0
Gtsf1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640180,396,936 - 180,397,769 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365302,908,751 - 2,909,200 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTSF1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1746,296,577 - 46,297,461 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11746,296,577 - 46,297,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21751,735,681 - 51,736,143 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTSF1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1220,086,078 - 20,087,139 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl220,086,605 - 20,087,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605068,817,986 - 68,818,915 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtsf1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479010,620,586 - 10,621,394 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtsf1l
92 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:134
Interacting mature miRNAs:137
Transcripts:ENSMUST00000094653
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160611165169794802Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160611165169794802Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse

Markers in Region
Gtsf1l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382163,087,150 - 163,087,514UniSTSGRCm38
MGSCv372162,912,886 - 162,913,250UniSTSGRCm37
Celera2169,033,783 - 169,034,147UniSTS
Cytogenetic Map2H3UniSTS
cM Map2 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000094653   ⟹   ENSMUSP00000092237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2162,928,954 - 162,929,775 (-)Ensembl
GRCm38.p6 Ensembl2163,087,034 - 163,087,855 (-)Ensembl
RefSeq Acc Id: NM_026630   ⟹   NP_080906
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392162,928,956 - 162,931,529 (-)NCBI
GRCm382163,087,031 - 163,089,601 (-)ENTREZGENE
MGSCv372162,912,767 - 162,915,337 (-)RGD
Celera2169,033,664 - 169,036,234 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_080906 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48439 (Get FASTA)   NCBI Sequence Viewer  
  BAB31474 (Get FASTA)   NCBI Sequence Viewer  
  BAB31558 (Get FASTA)   NCBI Sequence Viewer  
  BAE35658 (Get FASTA)   NCBI Sequence Viewer  
  EDL06317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092237
  ENSMUSP00000092237.5
GenBank Protein Q9CWD0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_080906   ⟸   NM_026630
- UniProtKB: Q3TVG1 (UniProtKB/Swiss-Prot),   Q9D2S8 (UniProtKB/Swiss-Prot),   Q9CWD0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000092237   ⟸   ENSMUST00000094653

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CWD0-F1-model_v2 AlphaFold Q9CWD0 1-151 view protein structure

Promoters
RGD ID:6831559
Promoter ID:MM_KWN:32846
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000002110
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362162,913,176 - 162,913,676 (-)MPROMDB
RGD ID:6831558
Promoter ID:MM_KWN:32847
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_026630
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362162,915,046 - 162,915,546 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915486 AgrOrtholog
Ensembl Genes ENSMUSG00000070708 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000094653 ENTREZGENE
  ENSMUST00000094653.6 UniProtKB/Swiss-Prot
InterPro TRM13/UPF0224_CHHC_Znf_dom UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
KEGG Report mmu:68236 UniProtKB/Swiss-Prot
MGD MGI:1915486 ENTREZGENE
NCBI Gene 68236 ENTREZGENE
PANTHER PTHR21402:SF3 UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam zf-U11-48K UniProtKB/Swiss-Prot
PhenoGen Gtsf1l PhenoGen
PROSITE ZF_CHHC_U11_48K UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt GTSFL_MOUSE UniProtKB/Swiss-Prot
  Q3TVG1 ENTREZGENE
  Q9CWD0 ENTREZGENE
  Q9D2S8 ENTREZGENE
UniProt Secondary Q3TVG1 UniProtKB/Swiss-Prot
  Q9D2S8 UniProtKB/Swiss-Prot