Arfgap2 (ADP-ribosylation factor GTPase activating protein 2) - Rat Genome Database

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Gene: Arfgap2 (ADP-ribosylation factor GTPase activating protein 2) Mus musculus
Analyze
Symbol: Arfgap2
Name: ADP-ribosylation factor GTPase activating protein 2
RGD ID: 1314647
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Predicted to be involved in COPI coating of Golgi vesicle. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytosol; and plasma membrane. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; liver; and retina. Orthologous to human ARFGAP2 (ADP ribosylation factor GTPase activating protein 2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 2310032E02Rik; ADP-ribosylation factor GTPase-activating protein 2; ARF GAP 2; GTPase-activating protein ZNF289; Zfp28; Zfp289; zinc finger protein 289
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15519  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,095,460 - 91,107,716 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,095,319 - 91,107,276 (+)EnsemblGRCm39 Ensembl
GRCm38291,265,115 - 91,277,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,264,974 - 91,276,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,105,272 - 91,117,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,066,145 - 91,077,770 (+)NCBIMGSCv36mm8
Celera292,650,576 - 92,662,831 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:9598303   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11278321   PMID:12477932   PMID:12520002   PMID:15226823   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16778019   PMID:17967808   PMID:18287559   PMID:19723774   PMID:20412781   PMID:21267068   PMID:21873635   PMID:22922362   PMID:32325033   PMID:32554809  
PMID:36417873  


Genomics

Comparative Map Data
Arfgap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,095,460 - 91,107,716 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,095,319 - 91,107,276 (+)EnsemblGRCm39 Ensembl
GRCm38291,265,115 - 91,277,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,264,974 - 91,276,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,105,272 - 91,117,528 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,066,145 - 91,077,770 (+)NCBIMGSCv36mm8
Celera292,650,576 - 92,662,831 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.62NCBI
ARFGAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,164,301 - 47,176,879 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,164,299 - 47,177,125 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,185,852 - 47,198,430 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,142,428 - 47,154,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,142,427 - 47,154,995NCBI
Celera1147,325,090 - 47,337,647 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,884,835 - 46,897,652 (-)NCBIHuRef
CHM1_11147,184,554 - 47,197,410 (-)NCBICHM1_1
T2T-CHM13v2.01147,321,070 - 47,333,633 (-)NCBIT2T-CHM13v2.0
Arfgap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,692,105 - 97,704,246 (+)NCBIGRCr8
mRatBN7.2377,236,305 - 77,248,445 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,236,322 - 77,248,455 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,714,617 - 80,726,606 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,313,632 - 89,325,628 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,164,775 - 87,176,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,081,541 - 80,093,659 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,081,647 - 80,093,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,790,321 - 86,802,360 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,620,198 - 75,633,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,516,566 - 75,529,718 (+)NCBI
Celera376,443,121 - 76,455,093 (+)NCBICelera
Cytogenetic Map3q24NCBI
Arfgap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422995,672 - 1,006,008 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422995,672 - 1,006,008 (+)NCBIChiLan1.0ChiLan1.0
ARFGAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,364,416 - 49,377,206 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,384,222 - 49,396,557 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,109,678 - 47,122,015 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,663,397 - 47,676,063 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,663,397 - 47,676,063 (-)Ensemblpanpan1.1panPan2
ARFGAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,399,743 - 42,410,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,399,815 - 42,409,382 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,128,440 - 41,138,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,053,990 - 43,064,427 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,054,014 - 43,064,454 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,540,299 - 42,550,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,095,239 - 42,105,661 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,825,149 - 42,835,577 (+)NCBIUU_Cfam_GSD_1.0
Arfgap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,884,505 - 19,894,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,996,000 - 2,006,554 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,996,000 - 2,005,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARFGAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,390,415 - 15,401,227 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,390,547 - 15,401,230 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,614,130 - 16,624,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARFGAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,136,257 - 18,161,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,136,519 - 18,148,228 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,437,617 - 115,450,127 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arfgap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,513,146 - 1,523,660 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,513,088 - 1,523,495 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arfgap2
311 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1652
Count of miRNA genes:579
Interacting mature miRNAs:712
Transcripts:ENSMUST00000028691, ENSMUST00000080008, ENSMUST00000127895, ENSMUST00000128296, ENSMUST00000146228, ENSMUST00000150701, ENSMUST00000150753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse

Markers in Region
RH128846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,264,417 - 91,264,589UniSTSGRCm38
MGSCv37291,104,574 - 91,104,746UniSTSGRCm37
Celera292,649,878 - 92,650,050UniSTS
Cytogenetic Map2E1UniSTS
AW413130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,264,347 - 91,264,433UniSTSGRCm38
MGSCv37291,104,504 - 91,104,590UniSTSGRCm37
Celera292,649,808 - 92,649,894UniSTS
Cytogenetic Map2E1UniSTS
Whitehead/MRC_RH21271.29UniSTS
UniSTS:235519  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386112,563,617 - 112,563,825UniSTSGRCm38
GRCm38291,265,308 - 91,265,683UniSTSGRCm38
MGSCv376112,513,611 - 112,513,819UniSTSGRCm37
MGSCv37291,105,465 - 91,105,840UniSTSGRCm37
Celera6114,398,968 - 114,399,176UniSTS
Celera292,650,769 - 92,651,144UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map6E3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF229439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY648993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ705585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028691   ⟹   ENSMUSP00000028691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,095,638 - 91,107,276 (+)Ensembl
GRCm38.p6 Ensembl291,265,293 - 91,276,931 (+)Ensembl
RefSeq Acc Id: ENSMUST00000080008   ⟹   ENSMUSP00000078920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,095,319 - 91,107,276 (+)Ensembl
GRCm38.p6 Ensembl291,264,974 - 91,276,931 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,100,437 - 91,104,470 (+)Ensembl
GRCm38.p6 Ensembl291,270,092 - 91,274,125 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,096,047 - 91,097,734 (+)Ensembl
GRCm38.p6 Ensembl291,265,702 - 91,267,389 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,099,687 - 91,103,952 (+)Ensembl
GRCm38.p6 Ensembl291,269,342 - 91,273,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,095,669 - 91,096,890 (+)Ensembl
GRCm38.p6 Ensembl291,265,324 - 91,266,545 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,095,679 - 91,099,097 (+)Ensembl
GRCm38.p6 Ensembl291,265,334 - 91,268,752 (+)Ensembl
RefSeq Acc Id: NM_001166024   ⟹   NP_001159496
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,095,460 - 91,107,716 (+)NCBI
GRCm38291,265,115 - 91,277,371 (+)ENTREZGENE
MGSCv37291,105,272 - 91,117,528 (+)RGD
Celera292,650,576 - 92,662,831 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023854   ⟹   NP_076343
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,095,460 - 91,107,716 (+)NCBI
GRCm38291,265,115 - 91,277,371 (+)ENTREZGENE
MGSCv37291,105,272 - 91,117,528 (+)RGD
Celera292,650,576 - 92,662,831 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_076343   ⟸   NM_023854
- Peptide Label: isoform 2
- UniProtKB: Q9D758 (UniProtKB/Swiss-Prot),   Q9JIH1 (UniProtKB/Swiss-Prot),   Q99K28 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001159496   ⟸   NM_001166024
- Peptide Label: isoform 1
- UniProtKB: Q99K28 (UniProtKB/Swiss-Prot),   Q3UR67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028691   ⟸   ENSMUST00000028691
RefSeq Acc Id: ENSMUSP00000078920   ⟸   ENSMUST00000080008
Protein Domains
Arf-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99K28-F1-model_v2 AlphaFold Q99K28 1-520 view protein structure

Promoters
RGD ID:6830805
Promoter ID:MM_KWN:30470
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001166024,   OTTMUST00000034214,   OTTMUST00000034216,   OTTMUST00000034217,   OTTMUST00000034218
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,104,276 - 91,105,462 (+)MPROMDB
RGD ID:6830807
Promoter ID:MM_KWN:30471
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:OTTMUST00000034219
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,108,734 - 91,109,234 (+)MPROMDB
RGD ID:6830806
Promoter ID:MM_KWN:30472
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:OTTMUST00000034220
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,109,256 - 91,110,107 (+)MPROMDB
RGD ID:6877914
Promoter ID:EPDNEW_M2408
Type:initiation region
Name:Arfgap2_1
Description:Mus musculus ADP-ribosylation factor GTPase activating protein2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,265,307 - 91,265,367EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924288 AgrOrtholog
Ensembl Genes ENSMUSG00000027255 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028691 ENTREZGENE
  ENSMUST00000028691.7 UniProtKB/Swiss-Prot
  ENSMUST00000080008 ENTREZGENE
  ENSMUST00000080008.13 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.220.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARFGAP/RecO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77038 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924288 ENTREZGENE
NCBI Gene 77038 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arfgap2 PhenoGen
PRINTS REVINTRACTNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARFGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ArfGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ARFG2_MOUSE UniProtKB/Swiss-Prot
  B0LAC6_MOUSE UniProtKB/TrEMBL
  Q3UR67 ENTREZGENE, UniProtKB/TrEMBL
  Q99K28 ENTREZGENE
  Q9D758 ENTREZGENE
  Q9JIH1 ENTREZGENE
UniProt Secondary Q9D758 UniProtKB/Swiss-Prot
  Q9JIH1 UniProtKB/Swiss-Prot