Stub1 (STIP1 homology and U-Box containing protein 1) - Rat Genome Database

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Gene: Stub1 (STIP1 homology and U-Box containing protein 1) Mus musculus
Analyze
Symbol: Stub1
Name: STIP1 homology and U-Box containing protein 1
RGD ID: 1314630
MGI Page MGI
Description: Enables protein homodimerization activity; ubiquitin protein ligase binding activity; and ubiquitin-ubiquitin ligase activity. Involved in several processes, including cellular response to topologically incorrect protein; positive regulation of ubiquitin-protein transferase activity; and proteolysis involved in cellular protein catabolic process. Acts upstream of or within protein polyubiquitination. Located in Z disc. Used to study autosomal recessive spinocerebellar ataxia 16. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 16 and cerebellar ataxia type 48. Orthologous to human STUB1 (STIP1 homology and U-box containing protein 1); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610033N24Rik; 2210017D18Rik; 2310040B03Rik; AW046544; carboxy terminus of Hsp70-interacting protein; CH; Chip; E3 ubiquitin-protein ligase CHIP; RING-type E3 ubiquitin transferase CHIP; STIP1 homology and U box-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18941  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,049,608 - 26,051,893 (-)NCBIGRCm39mm39
GRCm39 Ensembl1726,049,479 - 26,052,378 (-)Ensembl
GRCm381725,830,634 - 25,832,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,830,505 - 25,833,404 (-)EnsemblGRCm38mm10GRCm38
MGSCv371725,967,581 - 25,970,306 (-)NCBIGRCm37mm9NCBIm37
MGSCv361725,558,236 - 25,560,961 (-)NCBImm8
Celera1726,363,459 - 26,366,184 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10330192   PMID:10349636   PMID:10618491   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11435423   PMID:12150907   PMID:12477932   PMID:14507928   PMID:14532117  
PMID:14610273   PMID:14962978   PMID:15189447   PMID:15198682   PMID:15218247   PMID:15447663   PMID:15456869   PMID:15489334   PMID:15538384   PMID:15664989   PMID:15665051   PMID:15761032  
PMID:15761153   PMID:15782199   PMID:16111477   PMID:16141072   PMID:16141073   PMID:16307917   PMID:16452087   PMID:16554822   PMID:16807328   PMID:16931512   PMID:17209571   PMID:17304350  
PMID:17317785   PMID:17494697   PMID:18292230   PMID:18411298   PMID:18412542   PMID:18541707   PMID:18784277   PMID:19084066   PMID:19196961   PMID:19362296   PMID:19465479   PMID:19536328  
PMID:19737534   PMID:19953350   PMID:20060297   PMID:20368287   PMID:20413784   PMID:20588253   PMID:20677910   PMID:20861078   PMID:20974249   PMID:21267068   PMID:21510971   PMID:21855799  
PMID:21873635   PMID:21911421   PMID:22267842   PMID:22407479   PMID:22492994   PMID:22606257   PMID:22717542   PMID:22734001   PMID:23485987   PMID:23553918   PMID:23612611   PMID:23668972  
PMID:23863712   PMID:23892456   PMID:23973223   PMID:24043303   PMID:24113144   PMID:24218449   PMID:24251647   PMID:24312598   PMID:24510904   PMID:24578159   PMID:24651434   PMID:25268320  
PMID:25560411   PMID:25602369   PMID:25792747   PMID:25818514   PMID:26206088   PMID:26265139   PMID:26365490   PMID:26414348   PMID:26841045   PMID:26900751   PMID:27099235   PMID:27103069  
PMID:27113764   PMID:27178152   PMID:27325702   PMID:27406999   PMID:28059128   PMID:28378742   PMID:28546219   PMID:28593200   PMID:28754656   PMID:29111393   PMID:29145196   PMID:29242192  
PMID:29242247   PMID:29593341   PMID:29619270   PMID:29934347   PMID:30107089   PMID:30111698   PMID:30222779   PMID:30352681   PMID:30550785   PMID:30885946   PMID:31138677   PMID:31189917  
PMID:31951392   PMID:32325033   PMID:32968282   PMID:33082318   PMID:33472166  


Genomics

Comparative Map Data
Stub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,049,608 - 26,051,893 (-)NCBIGRCm39mm39
GRCm39 Ensembl1726,049,479 - 26,052,378 (-)Ensembl
GRCm381725,830,634 - 25,832,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,830,505 - 25,833,404 (-)EnsemblGRCm38mm10GRCm38
MGSCv371725,967,581 - 25,970,306 (-)NCBIGRCm37mm9NCBIm37
MGSCv361725,558,236 - 25,560,961 (-)NCBImm8
Celera1726,363,459 - 26,366,184 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.93NCBI
STUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl16680,224 - 682,870 (+)EnsemblGRCh38hg38GRCh38
GRCh3816680,410 - 682,801 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3716730,410 - 732,801 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616670,116 - 672,769 (+)NCBINCBI36hg18NCBI36
Build 3416670,115 - 672,768NCBI
Celera16930,272 - 932,925 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef16651,974 - 654,645 (+)NCBIHuRef
CHM1_116730,089 - 732,742 (+)NCBICHM1_1
Stub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21014,850,765 - 14,853,046 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1014,850,765 - 14,853,046 (-)Ensembl
Rnor_6.01015,197,754 - 15,200,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,197,803 - 15,200,117 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,010,697 - 15,012,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,096,150 - 15,098,431 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11015,096,147 - 15,098,378 (-)NCBI
Celera1014,519,707 - 14,521,988 (-)NCBICelera
Cytogenetic Map10q12NCBI
Stub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,521,130 - 16,523,468 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,521,130 - 16,523,733 (-)NCBIChiLan1.0ChiLan1.0
STUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.116694,414 - 696,682 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16694,414 - 696,682 (+)Ensemblpanpan1.1panPan2
STUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,893,492 - 39,895,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,893,670 - 39,897,573 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,157,620 - 41,160,024 (-)NCBI
ROS_Cfam_1.0640,236,147 - 40,238,551 (-)NCBI
UMICH_Zoey_3.1639,924,709 - 39,927,112 (-)NCBI
UNSW_CanFamBas_1.0639,884,918 - 39,887,322 (-)NCBI
UU_Cfam_GSD_1.0640,364,058 - 40,366,462 (-)NCBI
Stub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,230,907 - 112,233,127 (-)NCBI
SpeTri2.0NW_004936501328,767 - 330,963 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,092,447 - 41,095,136 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,092,514 - 41,095,181 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,382,439 - 41,385,101 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15599,907 - 602,549 (+)NCBI
ChlSab1.1 Ensembl5599,819 - 605,567 (+)Ensembl
Vero_WHO_p1.0NW_02366606830,534,608 - 30,537,266 (-)NCBI
Stub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,491,873 - 1,494,249 (+)NCBI

Position Markers
UniSTS:237594  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,833,972 - 25,834,214UniSTSGRCm38
MGSCv371725,970,917 - 25,971,159UniSTSGRCm37
Celera1726,366,795 - 26,367,037UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map17B1UniSTS
cM Map1711.6UniSTS
AW046544  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,833,911 - 25,834,026UniSTSGRCm38
MGSCv371725,970,856 - 25,970,971UniSTSGRCm37
Celera1726,366,734 - 26,366,849UniSTS
Cytogenetic Map17B1UniSTS
cM Map1711.6UniSTS
Whitehead/MRC_RH17319.14UniSTS
Dmrt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,830,679 - 25,830,835UniSTSGRCm38
MGSCv371725,967,624 - 25,967,780UniSTSGRCm37
Celera1726,363,502 - 26,363,658UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map19C2-C3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172485760955405969Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172536594043665344Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172573195128773124Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:224
Interacting mature miRNAs:234
Transcripts:ENSMUST00000044911
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_157361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_157362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF129086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044911   ⟹   ENSMUSP00000040431
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,479 - 26,052,335 (-)Ensembl
GRCm38.p6 Ensembl1725,830,505 - 25,833,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235484
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,610 - 26,051,893 (-)Ensembl
GRCm38.p6 Ensembl1725,830,636 - 25,832,919 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235572
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,614 - 26,051,927 (-)Ensembl
GRCm38.p6 Ensembl1725,830,640 - 25,832,953 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236361   ⟹   ENSMUSP00000158435
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,610 - 26,051,921 (-)Ensembl
GRCm38.p6 Ensembl1725,830,636 - 25,832,947 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236515   ⟹   ENSMUSP00000157919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,608 - 26,051,915 (-)Ensembl
GRCm38.p6 Ensembl1725,830,634 - 25,832,941 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,610 - 26,051,893 (-)Ensembl
GRCm38.p6 Ensembl1725,830,636 - 25,832,919 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237186   ⟹   ENSMUSP00000158532
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1726,049,590 - 26,052,378 (-)Ensembl
GRCm38.p6 Ensembl1725,830,616 - 25,833,404 (-)Ensembl
RefSeq Acc Id: NM_019719   ⟹   NP_062693
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,049,608 - 26,051,893 (-)NCBI
GRCm381725,830,634 - 25,832,919 (-)NCBI
MGSCv371725,967,581 - 25,970,306 (-)RGD
Celera1726,363,459 - 26,366,184 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_157361
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,049,608 - 26,051,893 (-)NCBI
GRCm381725,830,634 - 25,832,919 (-)NCBI
Sequence:
RefSeq Acc Id: NR_157362
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391726,049,608 - 26,051,893 (-)NCBI
GRCm381725,830,634 - 25,832,919 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_062693   ⟸   NM_019719
- UniProtKB: Q9WUD1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000158532   ⟸   ENSMUST00000237186
RefSeq Acc Id: ENSMUSP00000157919   ⟸   ENSMUST00000236515
RefSeq Acc Id: ENSMUSP00000158435   ⟸   ENSMUST00000236361
RefSeq Acc Id: ENSMUSP00000040431   ⟸   ENSMUST00000044911
Protein Domains
TPR_REGION   U-box

Promoters
RGD ID:13675194
Promoter ID:EPDNEW_M21745
Type:initiation region
Name:Stub1_1
Description:Mus musculus STIP1 homology and U-Box containing protein 1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21746  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,832,919 - 25,832,979EPDNEW
RGD ID:13675192
Promoter ID:EPDNEW_M21746
Type:single initiation site
Name:Stub1_2
Description:Mus musculus STIP1 homology and U-Box containing protein 1 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21745  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,833,378 - 25,833,438EPDNEW
RGD ID:6828731
Promoter ID:MM_KWN:22637
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019719
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361725,969,756 - 25,971,177 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891731 AgrOrtholog
Ensembl Genes ENSMUSG00000039615 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000040431 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000157919 UniProtKB/TrEMBL
  ENSMUSP00000158435 UniProtKB/TrEMBL
  ENSMUSP00000158532 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044911 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000236361 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000236515 UniProtKB/TrEMBL
  ENSMUST00000236565 ENTREZGENE
  ENSMUST00000237186 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CHIP_TPR_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubox_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56424 UniProtKB/Swiss-Prot
MGD MGI:1891731 ENTREZGENE
NCBI Gene 56424 ENTREZGENE
Pfam CHIP_TPR_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stub1 PhenoGen
PROSITE TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  U_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BBF6_MOUSE UniProtKB/TrEMBL
  A0A494BBI6_MOUSE UniProtKB/TrEMBL
  CHIP_MOUSE UniProtKB/Swiss-Prot
  Q3TYJ0_MOUSE UniProtKB/TrEMBL
  Q9WUD1 ENTREZGENE
UniProt Secondary Q9DCJ0 UniProtKB/Swiss-Prot