Stxbp6 (syntaxin binding protein 6 (amisyn)) - Rat Genome Database

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Gene: Stxbp6 (syntaxin binding protein 6 (amisyn)) Mus musculus
Analyze
Symbol: Stxbp6
Name: syntaxin binding protein 6 (amisyn)
RGD ID: 1314545
MGI Page MGI
Description: Predicted to be involved in regulation of SNARE complex assembly. Predicted to be located in cytoplasm and membrane. Is expressed in several structures, including brain; gut; hindlimb; olfactory epithelium; and tail. Orthologous to human STXBP6 (syntaxin binding protein 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: amisyn; BC024598; C85317; expressed sequence C85317; MGC30948; syntaxin-binding protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,899,267 - 45,121,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,899,267 - 45,121,492 (-)EnsemblGRCm39 Ensembl
GRCm381244,852,484 - 45,075,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,852,484 - 45,074,709 (-)EnsemblGRCm38mm10GRCm38
MGSCv371245,953,473 - 46,175,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361245,722,772 - 45,944,769 (-)NCBIMGSCv36mm8
Celera1246,183,223 - 46,404,169 (-)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1220.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
chlordecone  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (EXP)
DDT  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
heroin  (ISO)
hydroquinone  (ISO)
lipopolysaccharide  (ISO)
methidathion  (EXP)
methimazole  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
phenformin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
poly(I:C)  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16934000  
PMID:17273929   PMID:21267068   PMID:21677750   PMID:21862448   PMID:21873635   PMID:24441682   PMID:24952961   PMID:26238476   PMID:26993066   PMID:27855657   PMID:34321999   PMID:37318953  
PMID:38187761  


Genomics

Comparative Map Data
Stxbp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391244,899,267 - 45,121,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1244,899,267 - 45,121,492 (-)EnsemblGRCm39 Ensembl
GRCm381244,852,484 - 45,075,118 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1244,852,484 - 45,074,709 (-)EnsemblGRCm38mm10GRCm38
MGSCv371245,953,473 - 46,175,470 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361245,722,772 - 45,944,769 (-)NCBIMGSCv36mm8
Celera1246,183,223 - 46,404,169 (-)NCBICelera
Cytogenetic Map12B3NCBI
cM Map1220.71NCBI
STXBP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,809,454 - 25,050,147 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,809,454 - 25,050,147 (-)EnsemblGRCh38hg38GRCh38
GRCh371425,278,660 - 25,519,353 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361424,351,133 - 24,588,935 (-)NCBINCBI36Build 36hg18NCBI36
Build 341424,351,143 - 24,588,935NCBI
Celera145,145,717 - 5,383,553 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef145,395,405 - 5,633,124 (-)NCBIHuRef
CHM1_11425,280,175 - 25,518,046 (-)NCBICHM1_1
T2T-CHM13v2.01419,007,660 - 19,248,390 (-)NCBIT2T-CHM13v2.0
Stxbp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8667,647,721 - 67,884,369 (-)NCBIGRCr8
mRatBN7.2661,920,756 - 62,157,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl661,920,756 - 62,158,024 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx662,284,322 - 62,508,459 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0662,599,438 - 62,823,576 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0662,048,557 - 62,266,257 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0665,086,483 - 65,319,527 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl665,089,318 - 65,319,527 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0674,668,707 - 74,901,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4664,249,917 - 64,490,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1664,252,939 - 64,917,595 (-)NCBI
Celera660,910,136 - 61,134,498 (-)NCBICelera
Cytogenetic Map6q21NCBI
Stxbp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,168,453 - 35,358,637 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540935,096,888 - 35,358,571 (+)NCBIChiLan1.0ChiLan1.0
STXBP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21526,156,926 - 26,397,853 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11425,373,418 - 25,614,344 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,578,254 - 5,819,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,701,597 - 23,942,355 (-)NCBIpanpan1.1PanPan1.1panPan2
STXBP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,638,376 - 4,877,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,641,460 - 4,877,030 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,559,579 - 4,804,661 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,749,177 - 4,988,271 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,749,209 - 4,988,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,437,959 - 4,676,664 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,501,118 - 4,739,548 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,763,295 - 5,002,153 (-)NCBIUU_Cfam_GSD_1.0
Stxbp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,744,237 - 36,988,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936494250,126 - 438,956 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936494250,131 - 494,599 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl774,294,948 - 74,552,433 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1774,294,859 - 74,551,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2779,440,176 - 79,715,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,761,659 - 2,012,533 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,758,660 - 2,012,322 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603613,464,630 - 13,716,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stxbp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248207,450,857 - 7,724,304 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248207,450,825 - 7,724,175 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stxbp6
9033 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1680
Count of miRNA genes:682
Interacting mature miRNAs:871
Transcripts:ENSMUST00000053768, ENSMUST00000120531, ENSMUST00000130202, ENSMUST00000139750, ENSMUST00000143376
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13524845Ppiq8a_mprepulse inhibition QTL 8a (mouse)124032341244945796Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse

Markers in Region
C85317  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,852,561 - 44,852,640UniSTSGRCm38
MGSCv371245,953,548 - 45,953,627UniSTSGRCm37
Celera1246,183,298 - 46,183,377UniSTS
Cytogenetic Map12B3UniSTS
Whitehead/MRC_RH12487.12UniSTS
D12Mit245  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381244,920,603 - 44,920,716UniSTSGRCm38
MGSCv371246,021,590 - 46,021,703UniSTSGRCm37
Celera1246,249,883 - 46,249,994UniSTS
Cytogenetic Map12B3UniSTS
cM Map1222.0UniSTS
Whitehead Genetic1217.5UniSTS
Whitehead_YAC12 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY098954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01208344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000053768   ⟹   ENSMUSP00000052639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1244,899,267 - 45,121,492 (-)Ensembl
GRCm38.p6 Ensembl1244,852,484 - 45,074,709 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120531   ⟹   ENSMUSP00000112551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1244,899,271 - 45,120,895 (-)Ensembl
GRCm38.p6 Ensembl1244,852,488 - 45,074,112 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130202
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1244,908,148 - 45,059,747 (-)Ensembl
GRCm38.p6 Ensembl1244,861,365 - 45,012,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139750   ⟹   ENSMUSP00000119307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1245,059,715 - 45,121,101 (-)Ensembl
GRCm38.p6 Ensembl1245,012,932 - 45,074,318 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143376   ⟹   ENSMUSP00000117366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1244,949,660 - 45,120,937 (-)Ensembl
GRCm38.p6 Ensembl1244,902,877 - 45,074,154 (-)Ensembl
RefSeq Acc Id: ENSMUST00000218249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1245,066,028 - 45,121,009 (-)Ensembl
GRCm38.p6 Ensembl1245,019,245 - 45,074,226 (-)Ensembl
RefSeq Acc Id: NM_001411381   ⟹   NP_001398310
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,120,895 (-)NCBI
RefSeq Acc Id: NM_001411382   ⟹   NP_001398311
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,120,937 (-)NCBI
RefSeq Acc Id: NM_001411383   ⟹   NP_001398312
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,121,248 (-)NCBI
RefSeq Acc Id: NM_001411384   ⟹   NP_001398313
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,121,248 (-)NCBI
RefSeq Acc Id: NM_144552   ⟹   NP_653135
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,121,248 (-)NCBI
GRCm381244,852,486 - 45,074,483 (-)NCBI
MGSCv371245,953,473 - 46,175,470 (-)RGD
Celera1246,183,223 - 46,404,169 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177243
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,121,248 (-)NCBI
RefSeq Acc Id: NR_177244
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,121,248 (-)NCBI
RefSeq Acc Id: XM_036157308   ⟹   XP_036013201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391244,899,267 - 45,113,785 (-)NCBI
Sequence:
RefSeq Acc Id: NP_653135   ⟸   NM_144552
- Peptide Label: isoform 1
- UniProtKB: Q3TYA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119307   ⟸   ENSMUST00000139750
RefSeq Acc Id: ENSMUSP00000117366   ⟸   ENSMUST00000143376
RefSeq Acc Id: ENSMUSP00000052639   ⟸   ENSMUST00000053768
RefSeq Acc Id: ENSMUSP00000112551   ⟸   ENSMUST00000120531
RefSeq Acc Id: XP_036013201   ⟸   XM_036157308
- Peptide Label: isoform X1
- UniProtKB: Q3TYA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398313   ⟸   NM_001411384
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001398312   ⟸   NM_001411383
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001398311   ⟸   NM_001411382
- Peptide Label: isoform 1
- UniProtKB: Q3TYA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398310   ⟸   NM_001411381
- Peptide Label: isoform 1
- UniProtKB: Q3TYA4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3T5-F1-model_v2 AlphaFold Q8R3T5 1-210 view protein structure

Promoters
RGD ID:8678222
Promoter ID:EPDNEW_M17142
Type:initiation region
Name:Stxbp6_2
Description:Mus musculus syntaxin binding protein 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17143  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381245,074,323 - 45,074,383EPDNEW
RGD ID:8678224
Promoter ID:EPDNEW_M17143
Type:multiple initiation site
Name:Stxbp6_1
Description:Mus musculus syntaxin binding protein 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17142  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381245,074,465 - 45,074,525EPDNEW
RGD ID:6823452
Promoter ID:MM_KWN:11577
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000120531,   OTTMUST00000068359,   OTTMUST00000068361,   OTTMUST00000068362
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361246,175,256 - 46,175,972 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384963 AgrOrtholog
Ensembl Genes ENSMUSG00000046314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053768 ENTREZGENE
  ENSMUST00000053768.14 UniProtKB/TrEMBL
  ENSMUST00000120531 ENTREZGENE
  ENSMUST00000120531.8 UniProtKB/TrEMBL
  ENSMUST00000139750.2 UniProtKB/TrEMBL
  ENSMUST00000143376.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STXBP6_PH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STXBP6_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2384963 ENTREZGENE
NCBI Gene 217517 ENTREZGENE
PANTHER SEC3/SYNTAXIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNTAXIN-BINDING PROTEIN 6 (AMISYN),-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptobrevin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stxbp6 PhenoGen
PROSITE V_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B8JJ84_MOUSE UniProtKB/TrEMBL
  D6RJ81_MOUSE UniProtKB/TrEMBL
  Q3TYA4 ENTREZGENE, UniProtKB/TrEMBL
  Q8R3T5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Stxbp6  syntaxin binding protein 6 (amisyn)  C85317  expressed sequence C85317  Data merged from RGD:1612125 737654 PROVISIONAL