Naga (N-acetyl galactosaminidase, alpha) - Rat Genome Database

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Gene: Naga (N-acetyl galactosaminidase, alpha) Mus musculus
Analyze
Symbol: Naga
Name: N-acetyl galactosaminidase, alpha
RGD ID: 1314404
MGI Page MGI
Description: Predicted to enable alpha-N-acetylgalactosaminidase activity; alpha-galactosidase activity; and protein homodimerization activity. Predicted to be involved in several processes, including glycolipid catabolic process; glycoside catabolic process; and oligosaccharide metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in lysosome. Predicted to be active in cytoplasm. Is expressed in nervous system and skeleton. Human ortholog(s) of this gene implicated in Kanzaki disease; Schindler disease type 1; angiokeratoma; and neuroaxonal dystrophy. Orthologous to human NAGA (alpha-N-acetylgalactosaminidase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-galactosidase B; alpha-N-acetylgalactosaminidase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,213,746 - 82,222,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,213,733 - 82,223,126 (-)EnsemblGRCm39 Ensembl
GRCm381582,329,532 - 82,338,884 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,329,532 - 82,338,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv371582,159,962 - 82,169,256 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,157,307 - 82,166,570 (-)NCBIMGSCv36mm8
Celera1584,453,684 - 84,462,981 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
lysosome  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Schindler disease: the molecular lesion in the alpha-N-acetylgalactosaminidase gene that causes an infantile neuroaxonal dystrophy. Wang AM, etal., J Clin Invest. 1990 Nov;86(5):1752-6.
8. The molecular lesion in the alpha-N-acetylgalactosaminidase gene that causes angiokeratoma corporis diffusum with glycopeptiduria. Wang AM, etal., J Clin Invest. 1994 Aug;94(2):839-45.
Additional References at PubMed
PMID:9602128   PMID:9787108   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11471062   PMID:12160734   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:19853240   PMID:21267068   PMID:21670299   PMID:21677750   PMID:21873635   PMID:30973865   PMID:31040226  


Genomics

Comparative Map Data
Naga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,213,746 - 82,222,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,213,733 - 82,223,126 (-)EnsemblGRCm39 Ensembl
GRCm381582,329,532 - 82,338,884 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,329,532 - 82,338,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv371582,159,962 - 82,169,256 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361582,157,307 - 82,166,570 (-)NCBIMGSCv36mm8
Celera1584,453,684 - 84,462,981 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
NAGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382242,058,334 - 42,070,842 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2242,058,334 - 42,070,842 (-)EnsemblGRCh38hg38GRCh38
GRCh372242,454,338 - 42,466,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,784,331 - 40,796,719 (-)NCBINCBI36Build 36hg18NCBI36
Build 342240,778,884 - 40,791,273NCBI
Celera2226,260,520 - 26,273,049 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,420,503 - 25,433,033 (-)NCBIHuRef
CHM1_12242,414,453 - 42,426,959 (-)NCBICHM1_1
T2T-CHM13v2.02242,537,918 - 42,550,425 (-)NCBIT2T-CHM13v2.0
Naga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,726,438 - 115,735,494 (-)NCBIGRCr8
mRatBN7.27113,846,358 - 113,855,430 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,846,374 - 113,855,315 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,602,301 - 115,610,513 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,825,818 - 117,834,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,795,268 - 117,803,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,563,047 - 123,572,074 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,563,059 - 123,572,082 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,547,766 - 123,556,889 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,706,129 - 120,714,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,740,375 - 120,748,659 (-)NCBI
Celera7110,161,450 - 110,169,578 (-)NCBICelera
Cytogenetic Map7q34NCBI
Naga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,461,998 - 27,472,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541327,463,931 - 27,472,273 (-)NCBIChiLan1.0ChiLan1.0
NAGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,888,980 - 51,901,548 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,588,144 - 54,600,693 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,951,723 - 22,964,278 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12241,035,622 - 41,046,431 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2241,035,622 - 41,046,431 (-)Ensemblpanpan1.1panPan2
NAGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,303,950 - 23,312,409 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,304,354 - 23,396,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,236,291 - 23,248,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,046,730 - 24,058,681 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,048,856 - 24,140,741 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,764,333 - 23,776,295 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,085,173 - 24,097,124 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,259,163 - 24,271,114 (+)NCBIUU_Cfam_GSD_1.0
Naga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049456,924,320 - 6,938,883 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493671837,135 - 48,893 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493671831,946 - 55,822 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,571,020 - 6,588,055 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.156,580,141 - 6,587,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.253,969,705 - 3,986,467 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,589,133 - 24,607,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,592,409 - 24,607,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045100,787,749 - 100,800,152 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Naga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,675,255 - 6,692,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247526,682,272 - 6,689,491 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Naga
293 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:266
Count of miRNA genes:213
Interacting mature miRNAs:230
Transcripts:ENSMUST00000023088
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse

Markers in Region
AW822045  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381582,336,804 - 82,337,504UniSTSGRCm38
MGSCv371582,167,234 - 82,167,934UniSTSGRCm37
Celera1584,460,954 - 84,461,654UniSTS
Cytogenetic Map15EUniSTS
cM Map1546.0UniSTS
Whitehead/MRC_RH15724.74UniSTS
G73154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381582,336,872 - 82,337,432UniSTSGRCm38
MGSCv371582,167,302 - 82,167,862UniSTSGRCm37
Celera1584,461,022 - 84,461,582UniSTS
Cytogenetic Map15EUniSTS
cM Map1546.0UniSTS
Naga  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15EUniSTS
cM Map1546.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF079458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ223966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY079439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY079440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ093426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023088   ⟹   ENSMUSP00000023088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,213,733 - 82,223,027 (-)Ensembl
GRCm38.p6 Ensembl1582,329,532 - 82,338,826 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229294   ⟹   ENSMUSP00000154927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,218,987 - 82,222,537 (-)Ensembl
GRCm38.p6 Ensembl1582,334,786 - 82,338,336 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229388   ⟹   ENSMUSP00000155110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,219,090 - 82,223,126 (-)Ensembl
GRCm38.p6 Ensembl1582,334,889 - 82,338,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229733   ⟹   ENSMUSP00000155238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,213,842 - 82,223,081 (-)Ensembl
GRCm38.p6 Ensembl1582,329,641 - 82,338,880 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229948   ⟹   ENSMUSP00000155159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,218,987 - 82,223,008 (-)Ensembl
GRCm38.p6 Ensembl1582,334,786 - 82,338,807 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230139   ⟹   ENSMUSP00000155808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,214,935 - 82,220,166 (-)Ensembl
GRCm38.p6 Ensembl1582,330,734 - 82,335,965 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,213,888 - 82,215,123 (-)Ensembl
GRCm38.p6 Ensembl1582,329,687 - 82,330,922 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230269   ⟹   ENSMUSP00000155445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,220,971 - 82,222,661 (-)Ensembl
GRCm38.p6 Ensembl1582,336,770 - 82,338,460 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230380   ⟹   ENSMUSP00000155062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,218,818 - 82,222,983 (-)Ensembl
GRCm38.p6 Ensembl1582,334,617 - 82,338,782 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1582,214,102 - 82,216,886 (-)Ensembl
GRCm38.p6 Ensembl1582,329,901 - 82,332,685 (-)Ensembl
RefSeq Acc Id: NM_001411420   ⟹   NP_001398349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NM_008669   ⟹   NP_032695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
GRCm381582,329,532 - 82,338,826 (-)NCBI
MGSCv371582,159,962 - 82,169,256 (-)RGD
Celera1584,453,684 - 84,462,981 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177249
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NR_177250
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NR_177251
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NR_177252
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NR_177253
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391582,213,746 - 82,222,983 (-)NCBI
RefSeq Acc Id: NP_032695   ⟸   NM_008669
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8R437 (UniProtKB/Swiss-Prot),   O88620 (UniProtKB/Swiss-Prot),   Q8VDK2 (UniProtKB/Swiss-Prot),   Q9QWR8 (UniProtKB/Swiss-Prot),   Q3U6T2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000155062   ⟸   ENSMUST00000230380
RefSeq Acc Id: ENSMUSP00000155445   ⟸   ENSMUST00000230269
RefSeq Acc Id: ENSMUSP00000155808   ⟸   ENSMUST00000230139
RefSeq Acc Id: ENSMUSP00000023088   ⟸   ENSMUST00000023088
RefSeq Acc Id: ENSMUSP00000155238   ⟸   ENSMUST00000229733
RefSeq Acc Id: ENSMUSP00000155159   ⟸   ENSMUST00000229948
RefSeq Acc Id: ENSMUSP00000155110   ⟸   ENSMUST00000229388
RefSeq Acc Id: ENSMUSP00000154927   ⟸   ENSMUST00000229294
RefSeq Acc Id: NP_001398349   ⟸   NM_001411420
- Peptide Label: isoform 2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QWR8-F1-model_v2 AlphaFold Q9QWR8 1-415 view protein structure

Promoters
RGD ID:6826251
Promoter ID:MM_KWN:19203
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_008669,   UC007WYX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361582,169,084 - 82,169,584 (-)MPROMDB
RGD ID:8684506
Promoter ID:EPDNEW_M20284
Type:initiation region
Name:Naga_1
Description:Mus musculus N-acetyl galactosaminidase, alpha , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381582,338,782 - 82,338,842EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1261422 AgrOrtholog
Ensembl Genes ENSMUSG00000022453 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023088 ENTREZGENE
  ENSMUST00000023088.8 UniProtKB/Swiss-Prot
  ENSMUST00000229294.2 UniProtKB/TrEMBL
  ENSMUST00000229388.2 UniProtKB/TrEMBL
  ENSMUST00000229733.2 UniProtKB/TrEMBL
  ENSMUST00000229948.2 UniProtKB/TrEMBL
  ENSMUST00000230139.2 UniProtKB/TrEMBL
  ENSMUST00000230269.2 UniProtKB/TrEMBL
  ENSMUST00000230380.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.20.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hydro_27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hydro_27/36_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Melibiase/NAGA_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17939 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1261422 ENTREZGENE
NCBI Gene 17939 ENTREZGENE
PANTHER ALPHA-N-ACETYLGALACTOSAMINIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Melibiase_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Melibiase_2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Naga PhenoGen
PRINTS GLHYDRLASE27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ALPHA_GALACTOSIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51445 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHC0_MOUSE UniProtKB/TrEMBL
  A0A2R8VHH9_MOUSE UniProtKB/TrEMBL
  A0A2R8VHJ3_MOUSE UniProtKB/TrEMBL
  A0A2R8VHU7_MOUSE UniProtKB/TrEMBL
  A0A2R8VK50_MOUSE UniProtKB/TrEMBL
  A0A2R8W742_MOUSE UniProtKB/TrEMBL
  NAGAB_MOUSE UniProtKB/Swiss-Prot
  O88620 ENTREZGENE
  Q3U6T2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UZX5_MOUSE UniProtKB/TrEMBL
  Q8R437 ENTREZGENE
  Q8VDK2 ENTREZGENE
  Q9QWR8 ENTREZGENE
UniProt Secondary O88620 UniProtKB/Swiss-Prot
  Q8R437 UniProtKB/Swiss-Prot
  Q8VDK2 UniProtKB/Swiss-Prot