Mrps24 (mitochondrial ribosomal protein S24) - Rat Genome Database

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Gene: Mrps24 (mitochondrial ribosomal protein S24) Mus musculus
Analyze
Symbol: Mrps24
Name: mitochondrial ribosomal protein S24
RGD ID: 1314388
MGI Page MGI
Description: Predicted to be a structural constituent of ribosome. Located in mitochondrion. Is expressed in several structures, including brain; early conceptus; genitourinary system; heart; and liver. Orthologous to human MRPS24 (mitochondrial ribosomal protein S24).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S24, mitochondrial; 3110030K20Rik; AI414579; MRP-S24; ribosomal protein, mitochondrial, S24; Rpm; Rpms24; S24mt; small ribosomal subunit protein uS3m
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,653,982 - 5,657,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,653,983 - 5,665,680 (-)EnsemblGRCm39 Ensembl
GRCm38115,703,982 - 5,707,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,703,983 - 5,715,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,603,986 - 5,607,702 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,603,986 - 5,607,688 (-)NCBIMGSCv36mm8
Celera116,194,491 - 6,198,196 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10938081   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17015433   PMID:18614015   PMID:18799693   PMID:21677750   PMID:25838379   PMID:27023846   PMID:30550785   PMID:32987154   PMID:36114006  


Genomics

Comparative Map Data
Mrps24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,653,982 - 5,657,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,653,983 - 5,665,680 (-)EnsemblGRCm39 Ensembl
GRCm38115,703,982 - 5,707,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,703,983 - 5,715,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,603,986 - 5,607,702 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,603,986 - 5,607,688 (-)NCBIMGSCv36mm8
Celera116,194,491 - 6,198,196 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.87NCBI
MRPS24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,866,558 - 43,869,517 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl743,866,558 - 43,869,893 (-)EnsemblGRCh38hg38GRCh38
GRCh37743,906,157 - 43,909,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,872,682 - 43,875,670 (-)NCBINCBI36Build 36hg18NCBI36
Build 34743,679,396 - 43,682,337NCBI
Celera743,896,023 - 43,899,010 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,791,199 - 43,794,186 (-)NCBIHuRef
CHM1_1743,910,051 - 43,913,039 (-)NCBICHM1_1
T2T-CHM13v2.0744,024,848 - 44,027,808 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2743,945,658 - 43,948,645 (-)NCBI
Mrps24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81484,798,649 - 84,802,777 (-)NCBIGRCr8
mRatBN7.21480,584,671 - 80,588,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1480,584,673 - 80,588,871 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,986,478 - 84,990,606 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,226,591 - 86,230,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01482,675,915 - 82,680,043 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01485,947,763 - 85,951,891 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,947,765 - 85,951,899 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,640,004 - 86,644,132 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,357,051 - 86,361,179 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11486,386,823 - 86,411,234 (-)NCBI
Celera1479,469,587 - 79,473,715 (-)NCBICelera
Cytogenetic Map14q21NCBI
Mrps24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,009,523 - 8,015,863 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,009,523 - 8,012,920 (+)NCBIChiLan1.0ChiLan1.0
MRPS24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2644,580,304 - 44,583,710 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1792,905,416 - 92,908,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0740,381,723 - 40,384,745 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1740,427,349 - 40,430,335 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl740,427,349 - 40,430,335 (+)Ensemblpanpan1.1panPan2
MRPS24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha161,929,052 - 1,931,446 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01614,930,562 - 14,932,956 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01614,561,671 - 14,564,055 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,542,319 - 14,544,713 (+)NCBIUU_Cfam_GSD_1.0
Mrps24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,712,290 - 99,718,013 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647818,924,489 - 18,927,214 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647818,924,321 - 18,927,979 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,825,782 - 48,830,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,825,747 - 48,872,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,538,603 - 53,541,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,717,207 - 14,720,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660627,792,690 - 7,796,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,040,260 - 8,042,530 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,040,096 - 8,043,080 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mrps24
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:908
Count of miRNA genes:465
Interacting mature miRNAs:536
Transcripts:ENSMUST00000020770, ENSMUST00000123697, ENSMUST00000132874, ENSMUST00000149980, ENSMUST00000154330
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095914Pglq16_mpelvic girdle length QTL 16, 16 week (mouse)11325000018150000Mouse
27095919Pglq10_mpelvic girdle length QTL 10, 10 week (mouse)11325000018450000Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse

Markers in Region
AI414579  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38115,704,402 - 5,704,513UniSTSGRCm38
MGSCv37115,604,405 - 5,604,516UniSTSGRCm37
Celera116,194,910 - 6,195,021UniSTS
Cytogenetic Map11A1UniSTS
Whitehead/MRC_RH1128.09UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000020770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,654,326 - 5,657,667 (-)Ensembl
GRCm38.p6 Ensembl115,704,326 - 5,707,667 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,654,660 - 5,657,642 (-)Ensembl
GRCm38.p6 Ensembl115,704,660 - 5,707,642 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,654,555 - 5,657,690 (-)Ensembl
GRCm38.p6 Ensembl115,704,555 - 5,707,690 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,654,523 - 5,665,680 (-)Ensembl
GRCm38.p6 Ensembl115,704,523 - 5,715,680 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154330   ⟹   ENSMUSP00000119535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,653,983 - 5,657,687 (-)Ensembl
GRCm38.p6 Ensembl115,703,983 - 5,707,687 (-)Ensembl
RefSeq Acc Id: NM_001362871   ⟹   NP_001349800
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,653,982 - 5,657,701 (-)NCBI
GRCm38115,703,982 - 5,707,701 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026080   ⟹   NP_080356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,653,982 - 5,657,701 (-)NCBI
GRCm38115,703,982 - 5,707,701 (-)NCBI
MGSCv37115,603,986 - 5,607,702 (-)RGD
Celera116,194,491 - 6,198,196 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080356   ⟸   NM_026080
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9CQV5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001349800   ⟸   NM_001362871
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000119535   ⟸   ENSMUST00000154330

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQV5-F1-model_v2 AlphaFold Q9CQV5 1-167 view protein structure

Promoters
RGD ID:6821351
Promoter ID:MM_KWN:6307
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_026080,   OTTMUST00000011393,   OTTMUST00000011394,   OTTMUST00000073066
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,607,526 - 5,608,232 (-)MPROMDB
RGD ID:6821354
Promoter ID:MM_KWN:6308
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000011395
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36115,615,191 - 5,616,577 (-)MPROMDB
RGD ID:8673850
Promoter ID:EPDNEW_M14955
Type:multiple initiation site
Name:Mrps24_1
Description:Mus musculus mitochondrial ribosomal protein S24 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38115,707,687 - 5,707,747EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1928142 AgrOrtholog
Ensembl Genes ENSMUSG00000020477 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000154330 ENTREZGENE
  ENSMUST00000154330.2 UniProtKB/Swiss-Prot
InterPro MRPS24 UniProtKB/Swiss-Prot
KEGG Report mmu:64660 UniProtKB/Swiss-Prot
MGD MGI:1928142 ENTREZGENE
NCBI Gene 64660 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S24, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR21244 UniProtKB/Swiss-Prot
Pfam MRP-S24 UniProtKB/Swiss-Prot
PhenoGen Mrps24 PhenoGen
UniProt Q9CQV5 ENTREZGENE, UniProtKB/Swiss-Prot