BRMS1L (BRMS1 like transcriptional repressor) - Rat Genome Database

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Gene: BRMS1L (BRMS1 like transcriptional repressor) Homo sapiens
Analyze
Symbol: BRMS1L
Name: BRMS1 like transcriptional repressor
RGD ID: 1314372
HGNC Page HGNC:20512
Description: Predicted to enable histone deacetylase binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of Sin3-type complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: breast cancer metastasis-suppressor 1; breast cancer metastasis-suppressor 1 like; breast cancer metastasis-suppressor 1-like; breast cancer metastasis-suppressor 1-like protein; BRMS1; BRMS1-homolog protein p40; BRMS1-like protein p40; MGC11296; p40
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381435,826,338 - 35,871,963 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1435,826,338 - 35,932,325 (+)EnsemblGRCh38hg38GRCh38
GRCh371436,295,544 - 36,341,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361435,365,348 - 35,410,920 (+)NCBINCBI36Build 36hg18NCBI36
Build 341435,365,367 - 35,409,624NCBI
Celera1416,159,459 - 16,205,033 (+)NCBICelera
Cytogenetic Map14q13.2NCBI
HuRef1416,409,385 - 16,454,849 (+)NCBIHuRef
CHM1_11436,295,642 - 36,341,214 (+)NCBICHM1_1
T2T-CHM13v2.01430,014,073 - 30,059,698 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA,NAS)
Sin3-type complex  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9651585   PMID:12477932   PMID:14702039   PMID:15451426   PMID:16387653   PMID:17207965   PMID:21873635   PMID:22865885   PMID:22984288   PMID:23414517   PMID:23752268   PMID:24981860  
PMID:25406648   PMID:25416956   PMID:25609649   PMID:26186194   PMID:26496610   PMID:26841866   PMID:26949739   PMID:27248496   PMID:27634302   PMID:27705803   PMID:28514442   PMID:28554894  
PMID:29568061   PMID:29660900   PMID:29844126   PMID:29911972   PMID:30118697   PMID:30804502   PMID:31515488   PMID:31753913   PMID:32296183   PMID:32814053   PMID:32877691   PMID:33961781  
PMID:34709266   PMID:35013218   PMID:35140242   PMID:35271311   PMID:38297188  


Genomics

Comparative Map Data
BRMS1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381435,826,338 - 35,871,963 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1435,826,338 - 35,932,325 (+)EnsemblGRCh38hg38GRCh38
GRCh371436,295,544 - 36,341,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361435,365,348 - 35,410,920 (+)NCBINCBI36Build 36hg18NCBI36
Build 341435,365,367 - 35,409,624NCBI
Celera1416,159,459 - 16,205,033 (+)NCBICelera
Cytogenetic Map14q13.2NCBI
HuRef1416,409,385 - 16,454,849 (+)NCBIHuRef
CHM1_11436,295,642 - 36,341,214 (+)NCBICHM1_1
T2T-CHM13v2.01430,014,073 - 30,059,698 (+)NCBIT2T-CHM13v2.0
Brms1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,883,109 - 55,916,521 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,883,109 - 55,916,521 (+)EnsemblGRCm39 Ensembl
GRCm381255,836,324 - 55,869,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,836,324 - 55,869,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv371256,937,353 - 56,970,722 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361256,754,496 - 56,787,867 (+)NCBIMGSCv36mm8
Celera1256,985,730 - 57,019,101 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.18NCBI
Brms1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8679,001,803 - 79,035,735 (+)NCBIGRCr8
mRatBN7.2673,266,673 - 73,300,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl673,266,691 - 73,300,631 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx673,686,861 - 73,720,787 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,993,249 - 74,027,179 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0673,420,752 - 73,454,673 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0676,675,399 - 76,708,261 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0676,743,243 - 76,753,950 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,675,418 - 76,708,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl676,675,437 - 76,753,950 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0686,277,287 - 86,285,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4676,177,597 - 76,211,519 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1676,180,728 - 76,213,296 (+)NCBI
Celera672,099,705 - 72,133,654 (+)NCBICelera
Cytogenetic Map6q23NCBI
Brms1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540925,285,974 - 25,319,557 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540925,286,312 - 25,319,557 (-)NCBIChiLan1.0ChiLan1.0
BRMS1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21537,139,927 - 37,188,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11436,356,430 - 36,405,163 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01416,579,323 - 16,628,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11434,759,935 - 34,807,803 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1434,759,935 - 34,807,803 (+)Ensemblpanpan1.1panPan2
BRMS1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1814,487,055 - 14,517,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl814,487,086 - 14,516,264 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha814,283,167 - 14,313,742 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0814,594,166 - 14,624,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl814,594,182 - 14,624,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1814,294,542 - 14,325,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0814,360,184 - 14,390,764 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0814,649,898 - 14,680,478 (+)NCBIUU_Cfam_GSD_1.0
Brms1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864046,379,537 - 46,421,084 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364949,885,067 - 9,929,130 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364949,885,446 - 9,926,978 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRMS1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,083,289 - 64,123,857 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,083,286 - 64,123,852 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,057,765 - 69,098,327 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRMS1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12412,630,194 - 12,678,120 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2412,630,693 - 12,678,162 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660531,601,418 - 1,650,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brms1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624838985,822 - 1,020,477 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624838984,051 - 1,020,498 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BRMS1L
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q11.2-21.2(chr14:20196945-45284802)x1 copy number loss See cases [RCV000051485] Chr14:20196945..45284802 [GRCh38]
Chr14:20665104..45754005 [GRCh37]
Chr14:19734944..44823755 [NCBI36]
Chr14:14q11.2-21.2
pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:23548960-41983402)x1 copy number loss See cases [RCV000051490] Chr14:23548960..41983402 [GRCh38]
Chr14:24018169..42452605 [GRCh37]
Chr14:23088009..41522355 [NCBI36]
Chr14:14q11.2-21.1
pathogenic
GRCh38/hg38 14q13.1-13.3(chr14:34450934-36880151)x1 copy number loss See cases [RCV000051492] Chr14:34450934..36880151 [GRCh38]
Chr14:34920140..37349356 [GRCh37]
Chr14:33989891..36419107 [NCBI36]
Chr14:14q13.1-13.3
pathogenic
GRCh38/hg38 14q13.2(chr14:35696014-36030164)x1 copy number loss See cases [RCV000051514] Chr14:35696014..36030164 [GRCh38]
Chr14:36165220..36499370 [GRCh37]
Chr14:35234971..35569121 [NCBI36]
Chr14:14q13.2
pathogenic
GRCh38/hg38 14q12-21.2(chr14:30670314-44990595)x3 copy number gain See cases [RCV000052292] Chr14:30670314..44990595 [GRCh38]
Chr14:31139520..45459798 [GRCh37]
Chr14:30209271..44529548 [NCBI36]
Chr14:14q12-21.2
pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:20000611-38984415)x3 copy number gain See cases [RCV000053803] Chr14:20000611..38984415 [GRCh38]
Chr14:20468770..39453619 [GRCh37]
Chr14:19538610..38523370 [NCBI36]
Chr14:14q11.2-21.1
pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:20150949-39746154)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053806]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053806]|See cases [RCV000053806] Chr14:20150949..39746154 [GRCh38]
Chr14:20619108..40215358 [GRCh37]
Chr14:19688948..39285109 [NCBI36]
Chr14:14q11.2-21.1
pathogenic
GRCh38/hg38 14q12-21.1(chr14:30382554-37712341)x1 copy number loss See cases [RCV000135334] Chr14:30382554..37712341 [GRCh38]
Chr14:30851760..38181546 [GRCh37]
Chr14:29921511..37251297 [NCBI36]
Chr14:14q12-21.1
pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q13.2-13.3(chr14:35514078-36814016)x1 copy number loss See cases [RCV000136735] Chr14:35514078..36814016 [GRCh38]
Chr14:35983284..37283221 [GRCh37]
Chr14:35053035..36352972 [NCBI36]
Chr14:14q13.2-13.3
pathogenic
GRCh38/hg38 14q13.2-21.2(chr14:35068276-43994777)x1 copy number loss See cases [RCV000137841] Chr14:35068276..43994777 [GRCh38]
Chr14:35537482..44463980 [GRCh37]
Chr14:34607233..43533730 [NCBI36]
Chr14:14q13.2-21.2
pathogenic
GRCh38/hg38 14q13.2-13.3(chr14:35632641-36420484)x3 copy number gain See cases [RCV000140918] Chr14:35632641..36420484 [GRCh38]
Chr14:36101847..36889689 [GRCh37]
Chr14:35171598..35959440 [NCBI36]
Chr14:14q13.2-13.3
uncertain significance
GRCh38/hg38 14q13.1-21.1(chr14:33880412-42359485)x1 copy number loss See cases [RCV000142211] Chr14:33880412..42359485 [GRCh38]
Chr14:34349618..42828688 [GRCh37]
Chr14:33419369..41898438 [NCBI36]
Chr14:14q13.1-21.1
pathogenic
GRCh38/hg38 14q12-21.2(chr14:30792271-44685131)x1 copy number loss See cases [RCV000143063] Chr14:30792271..44685131 [GRCh38]
Chr14:31261477..45154334 [GRCh37]
Chr14:30331228..44224084 [NCBI36]
Chr14:14q12-21.2
pathogenic
GRCh38/hg38 14q13.1-13.3(chr14:33762166-36191750)x1 copy number loss See cases [RCV000142534] Chr14:33762166..36191750 [GRCh38]
Chr14:34231372..36660956 [GRCh37]
Chr14:33301123..35730707 [NCBI36]
Chr14:14q13.1-13.3
uncertain significance
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33
pathogenic
GRCh38/hg38 14q11.2-21.2(chr14:20022693-44093672)x3 copy number gain See cases [RCV000143186] Chr14:20022693..44093672 [GRCh38]
Chr14:20490852..44562875 [GRCh37]
Chr14:19560692..43632625 [NCBI36]
Chr14:14q11.2-21.2
pathogenic
GRCh38/hg38 14q11.2-21.3(chr14:20043513-48642042)x3 copy number gain See cases [RCV000143748] Chr14:20043513..48642042 [GRCh38]
Chr14:20511672..49111245 [GRCh37]
Chr14:19581512..48180995 [NCBI36]
Chr14:14q11.2-21.3
pathogenic
GRCh37/hg19 14q11.2-22.2(chr14:23164384-54733411)x3 copy number gain See cases [RCV000447658] Chr14:23164384..54733411 [GRCh37]
Chr14:14q11.2-22.2
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3 copy number gain See cases [RCV000446256] Chr14:19794561..107234280 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q13.2-21.1(chr14:35850213-40138562)x1 copy number loss See cases [RCV000447612] Chr14:35850213..40138562 [GRCh37]
Chr14:14q13.2-21.1
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437) copy number gain See cases [RCV000512041] Chr14:20511673..107285437 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
NM_032352.4(BRMS1L):c.77A>G (p.Glu26Gly) single nucleotide variant Inborn genetic diseases [RCV003271612] Chr14:35826593 [GRCh38]
Chr14:36295799 [GRCh37]
Chr14:14q13.2
uncertain significance
NM_032352.4(BRMS1L):c.238T>C (p.Tyr80His) single nucleotide variant Inborn genetic diseases [RCV003273939] Chr14:35832982 [GRCh38]
Chr14:36302188 [GRCh37]
Chr14:14q13.2
uncertain significance
GRCh37/hg19 14q13.2-21.2(chr14:35934503-47120961)x1 copy number loss not provided [RCV000683624] Chr14:35934503..47120961 [GRCh37]
Chr14:14q13.2-21.2
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3 copy number gain not provided [RCV000738413] Chr14:19280733..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3 copy number gain not provided [RCV000738414] Chr14:19327823..107287663 [GRCh37]
Chr14:14q11.2-32.33
pathogenic
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3 copy number gain not provided [RCV000738412] Chr14:19000422..107289053 [GRCh37]
Chr14:14q11.1-32.33
pathogenic
GRCh37/hg19 14q11.2-21.2(chr14:20511672-44829030)x3 copy number gain not provided [RCV001006605] Chr14:20511672..44829030 [GRCh37]
Chr14:14q11.2-21.2
pathogenic
GRCh37/hg19 14q13.2-13.3(chr14:36216962-36783249)x1 copy number loss not provided [RCV000847852] Chr14:36216962..36783249 [GRCh37]
Chr14:14q13.2-13.3
uncertain significance
GRCh37/hg19 14q11.2-21.1(chr14:20511672-42881888)x3 copy number gain not provided [RCV001249358] Chr14:20511672..42881888 [GRCh37]
Chr14:14q11.2-21.1
not provided
GRCh37/hg19 14q13.1-21.2(chr14:33608925-44570367) copy number loss Poor motor coordination [RCV001352634] Chr14:33608925..44570367 [GRCh37]
Chr14:14q13.1-21.2
pathogenic
GRCh37/hg19 14q11.2-21.3(chr14:20511672-47481203) copy number gain Seizure [RCV002280625] Chr14:20511672..47481203 [GRCh37]
Chr14:14q11.2-21.3
pathogenic
GRCh37/hg19 14q13.2-21.1(chr14:35850213-40138562) copy number loss not specified [RCV002053094] Chr14:35850213..40138562 [GRCh37]
Chr14:14q13.2-21.1
pathogenic
NC_000014.8:g.(21162263_36986276)_(36987308_50713602)del deletion Brain-lung-thyroid syndrome [RCV002221171] Chr14:36986276..36987308 [GRCh37]
Chr14:14q11.2-21.3
pathogenic
NM_032352.4(BRMS1L):c.599A>G (p.Lys200Arg) single nucleotide variant Inborn genetic diseases [RCV002997769] Chr14:35863930 [GRCh38]
Chr14:36333136 [GRCh37]
Chr14:14q13.2
uncertain significance
GRCh37/hg19 14q13.1-13.3(chr14:34904407-36784136)x1 copy number loss not provided [RCV002511791] Chr14:34904407..36784136 [GRCh37]
Chr14:14q13.1-13.3
pathogenic
NM_032352.4(BRMS1L):c.611T>C (p.Val204Ala) single nucleotide variant Inborn genetic diseases [RCV002930910] Chr14:35863942 [GRCh38]
Chr14:36333148 [GRCh37]
Chr14:14q13.2
uncertain significance
GRCh37/hg19 14q13.1-13.3(chr14:34585231-37477843)x1 copy number loss not provided [RCV003483199] Chr14:34585231..37477843 [GRCh37]
Chr14:14q13.1-13.3
pathogenic
GRCh37/hg19 14q11.2-23.1(chr14:20511673-61826023)x3 copy number gain not provided [RCV003485022] Chr14:20511673..61826023 [GRCh37]
Chr14:14q11.2-23.1
pathogenic
GRCh37/hg19 14q13.2(chr14:36083608-36551780)x3 copy number gain not provided [RCV003485029] Chr14:36083608..36551780 [GRCh37]
Chr14:14q13.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1445
Count of miRNA genes:686
Interacting mature miRNAs:781
Transcripts:ENST00000216807, ENST00000543183, ENST00000547420, ENST00000548758, ENST00000551774, ENST00000552677, ENST00000552849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G36155  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371436,306,510 - 36,306,686UniSTSGRCh37
Build 361435,376,261 - 35,376,437RGDNCBI36
Celera1416,170,372 - 16,170,548RGD
Cytogenetic Map14q13.2UniSTS
HuRef1416,420,294 - 16,420,470UniSTS
SHGC-144194  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371436,338,573 - 36,338,715UniSTSGRCh37
Build 361435,408,324 - 35,408,466RGDNCBI36
Celera1416,202,437 - 16,202,579RGD
Cytogenetic Map14q13.2UniSTS
HuRef1416,452,253 - 16,452,395UniSTS
TNG Radiation Hybrid Map147480.0UniSTS
A007C23  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371436,340,868 - 36,341,037UniSTSGRCh37
Build 361435,410,619 - 35,410,788RGDNCBI36
Celera1416,204,732 - 16,204,901RGD
Cytogenetic Map14q13.2UniSTS
HuRef1416,454,548 - 16,454,717UniSTS
GeneMap99-GB4 RH Map1475.37UniSTS
HSCZPC082  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371436,340,938 - 36,341,077UniSTSGRCh37
Build 361435,410,689 - 35,410,828RGDNCBI36
Celera1416,204,802 - 16,204,941RGD
Cytogenetic Map14q13.2UniSTS
HuRef1416,454,618 - 16,454,757UniSTS
GeneMap99-GB4 RH Map1476.48UniSTS
Whitehead-RH Map1487.2UniSTS
NCBI RH Map14201.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 278 1196 434 23 318 24 1402 259 1595 74 475 528 9 192 1020 3
Low 2154 1298 1290 599 1145 440 2953 1926 2139 341 977 1082 166 1 1012 1768 2 1
Below cutoff 4 489 2 1 481 1 1 11 4 6 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_032352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017021706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047431806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054376811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA836514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL162311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY827074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU507838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000216807   ⟹   ENSP00000216807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,826,338 - 35,871,963 (+)Ensembl
RefSeq Acc Id: ENST00000547420   ⟹   ENSP00000447022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,826,446 - 35,858,681 (+)Ensembl
RefSeq Acc Id: ENST00000548758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,826,457 - 35,866,051 (+)Ensembl
RefSeq Acc Id: ENST00000551774   ⟹   ENSP00000446826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,833,001 - 35,932,325 (+)Ensembl
RefSeq Acc Id: ENST00000552677   ⟹   ENSP00000448615
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,826,441 - 35,870,860 (+)Ensembl
RefSeq Acc Id: ENST00000552849
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1435,867,777 - 35,870,393 (+)Ensembl
RefSeq Acc Id: NM_032352   ⟹   NP_115728
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,338 - 35,871,963 (+)NCBI
GRCh371436,295,524 - 36,341,169 (+)NCBI
Build 361435,365,348 - 35,410,920 (+)NCBI Archive
Celera1416,159,459 - 16,205,033 (+)RGD
HuRef1416,409,385 - 16,454,849 (+)RGD
CHM1_11436,295,642 - 36,341,214 (+)NCBI
T2T-CHM13v2.01430,014,073 - 30,059,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005268128   ⟹   XP_005268185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,338 - 35,871,963 (+)NCBI
GRCh371436,295,524 - 36,341,169 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017021705   ⟹   XP_016877194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,875 - 35,871,963 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047431806   ⟹   XP_047287762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,338 - 35,871,963 (+)NCBI
RefSeq Acc Id: XM_054376809   ⟹   XP_054232784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01430,014,073 - 30,059,698 (+)NCBI
RefSeq Acc Id: XM_054376810   ⟹   XP_054232785
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01430,014,073 - 30,059,698 (+)NCBI
RefSeq Acc Id: XM_054376811   ⟹   XP_054232786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01430,014,610 - 30,059,698 (+)NCBI
RefSeq Acc Id: NP_115728   ⟸   NM_032352
- UniProtKB: B2RD65 (UniProtKB/Swiss-Prot),   A6NH45 (UniProtKB/Swiss-Prot),   A6NFW5 (UniProtKB/Swiss-Prot),   Q9BRI4 (UniProtKB/Swiss-Prot),   Q5PSV4 (UniProtKB/Swiss-Prot),   B4DLQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005268185   ⟸   XM_005268128
- Peptide Label: isoform X1
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016877194   ⟸   XM_017021705
- Peptide Label: isoform X3
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000216807   ⟸   ENST00000216807
RefSeq Acc Id: ENSP00000447022   ⟸   ENST00000547420
RefSeq Acc Id: ENSP00000446826   ⟸   ENST00000551774
RefSeq Acc Id: ENSP00000448615   ⟸   ENST00000552677
RefSeq Acc Id: XP_047287762   ⟸   XM_047431806
- Peptide Label: isoform X2
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054232785   ⟸   XM_054376810
- Peptide Label: isoform X2
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054232784   ⟸   XM_054376809
- Peptide Label: isoform X1
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054232786   ⟸   XM_054376811
- Peptide Label: isoform X3
- UniProtKB: B4DLQ5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PSV4-F1-model_v2 AlphaFold Q5PSV4 1-323 view protein structure

Promoters
RGD ID:6791301
Promoter ID:HG_KWN:19221
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_032352
Position:
Human AssemblyChrPosition (strand)Source
Build 361435,365,159 - 35,365,659 (+)MPROMDB
RGD ID:7227433
Promoter ID:EPDNEW_H19462
Type:initiation region
Name:BRMS1L_2
Description:breast cancer metastasis-suppressor 1 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19463  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,338 - 35,826,398EPDNEW
RGD ID:7227435
Promoter ID:EPDNEW_H19463
Type:initiation region
Name:BRMS1L_1
Description:breast cancer metastasis-suppressor 1 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19462  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381435,826,457 - 35,826,517EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20512 AgrOrtholog
COSMIC BRMS1L COSMIC
Ensembl Genes ENSG00000100916 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000216807 ENTREZGENE
  ENST00000216807.12 UniProtKB/Swiss-Prot
  ENST00000547420.5 UniProtKB/TrEMBL
  ENST00000551774.1 UniProtKB/TrEMBL
  ENST00000552677.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1500 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000100916 GTEx
HGNC ID HGNC:20512 ENTREZGENE
Human Proteome Map BRMS1L Human Proteome Map
InterPro Sds3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:84312 UniProtKB/Swiss-Prot
NCBI Gene 84312 ENTREZGENE
OMIM 618514 OMIM
PANTHER BREAST CANCER METASTASIS-SUPPRESSOR 1-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21964 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sds3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134968356 PharmGKB
SMART Sds3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6NFW5 ENTREZGENE
  A6NH45 ENTREZGENE
  B2RD65 ENTREZGENE
  B4DLQ5 ENTREZGENE, UniProtKB/TrEMBL
  BRM1L_HUMAN UniProtKB/Swiss-Prot
  F8VRR2_HUMAN UniProtKB/TrEMBL
  H0YHD0_HUMAN UniProtKB/TrEMBL
  Q5PSV4 ENTREZGENE
  Q9BRI4 ENTREZGENE
UniProt Secondary A6NFW5 UniProtKB/Swiss-Prot
  A6NH45 UniProtKB/Swiss-Prot
  B2RD65 UniProtKB/Swiss-Prot
  Q9BRI4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 BRMS1L  BRMS1 like transcriptional repressor    breast cancer metastasis-suppressor 1 like  Symbol and/or name change 5135510 APPROVED
2017-02-28 BRMS1L  breast cancer metastasis-suppressor 1 like    breast cancer metastasis-suppressor 1-like  Symbol and/or name change 5135510 APPROVED