Cux2 (cut-like homeobox 2) - Rat Genome Database
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Gene: Cux2 (cut-like homeobox 2) Mus musculus
Analyze
Symbol: Cux2
Name: cut-like homeobox 2
RGD ID: 1314311
MGI Page MGI
Description: Exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including positive regulation of nervous system development; regulation of gene expression; and short-term memory. Localizes to nucleus. Is expressed in several structures, including 1st branchial arch; central nervous system; genitourinary system; limb; and sensory organ. Human ortholog(s) of this gene implicated in early infantile epileptic encephalopathy. Orthologous to human CUX2 (cut like homeobox 2).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 1700051K22Rik; cut-like 2; Cutl; Cutl2; Cux-2; ENSMUSG00000072641; homeobox protein cut-like 2; homeobox protein Cux-2; RIKEN cDNA 1700051K22 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,996,025 - 122,188,522 (-)NCBIGRCm39mm39
GRCm39 Ensembl5121,994,429 - 122,188,165 (-)Ensembl
GRCm385121,857,962 - 122,050,415 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,856,366 - 122,050,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,310,225 - 122,497,834 (-)NCBIGRCm37mm9NCBIm37
MGSCv365122,120,833 - 122,308,442 (-)NCBImm8
Celera5118,950,598 - 119,138,874 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7910552   PMID:8798433   PMID:8840273   PMID:8879483   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12971989  
PMID:14610273   PMID:15238450   PMID:15452856   PMID:15656993   PMID:16141072   PMID:16141073   PMID:16157277   PMID:16309667   PMID:16602821   PMID:16766700   PMID:16766712   PMID:16873583  
PMID:16892058   PMID:16920270   PMID:17151600   PMID:17182777   PMID:17215451   PMID:17376969   PMID:17412818   PMID:17470284   PMID:17507397   PMID:17706960   PMID:17913789   PMID:18033766  
PMID:18215621   PMID:18223201   PMID:18250082   PMID:18255031   PMID:18287559   PMID:18327765   PMID:18448089   PMID:18562329   PMID:18579678   PMID:18794345   PMID:18940588   PMID:18957218  
PMID:19000783   PMID:19030180   PMID:19386638   PMID:19542352   PMID:19571125   PMID:19657336   PMID:19726493   PMID:19749747   PMID:19923290   PMID:20089898   PMID:20308569   PMID:20399730  
PMID:20412781   PMID:20506362   PMID:20510857   PMID:20685998   PMID:20685999   PMID:20723620   PMID:20847152   PMID:21104742   PMID:21122108   PMID:21220099   PMID:21267068   PMID:21315259  
PMID:21666133   PMID:21862448   PMID:21873635   PMID:21945863   PMID:21965613   PMID:21976438   PMID:22090492   PMID:22095278   PMID:22219353   PMID:22235033   PMID:22284184   PMID:22334647  
PMID:22365545   PMID:22479190   PMID:22879516   PMID:22923088   PMID:22966202   PMID:22991445   PMID:23022035   PMID:23142661   PMID:23303943   PMID:23312518   PMID:23454273   PMID:23643363  
PMID:24154525   PMID:24262147   PMID:24314728   PMID:24381249   PMID:24483844   PMID:24512687   PMID:24595293   PMID:24626607   PMID:24926615   PMID:24931612   PMID:24952961   PMID:24997765  
PMID:25059644   PMID:25071457   PMID:25252086   PMID:25480914   PMID:25741722   PMID:25875176   PMID:25971728   PMID:25996136   PMID:25996137   PMID:26218442   PMID:26221032   PMID:26235615  
PMID:26297811   PMID:26671461   PMID:26689553   PMID:26705332   PMID:26727548   PMID:26804994   PMID:27076431   PMID:27198720   PMID:27568566   PMID:27650319   PMID:28112643   PMID:28228269  
PMID:28272472   PMID:28288114   PMID:28932809   PMID:29031500   PMID:29739868   PMID:30329130   PMID:30455457   PMID:30770393   PMID:30784583   PMID:31042712   PMID:31079872   PMID:31080058  
PMID:31666704   PMID:31708105   PMID:31844315   PMID:32027825   PMID:32795398   PMID:32907847   PMID:32939091  


Genomics

Comparative Map Data
Cux2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,996,025 - 122,188,522 (-)NCBIGRCm39mm39
GRCm39 Ensembl5121,994,429 - 122,188,165 (-)Ensembl
GRCm385121,857,962 - 122,050,415 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,856,366 - 122,050,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,310,225 - 122,497,834 (-)NCBIGRCm37mm9NCBIm37
MGSCv365122,120,833 - 122,308,442 (-)NCBImm8
Celera5118,950,598 - 119,138,874 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.02NCBI
CUX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12111,034,165 - 111,350,554 (+)EnsemblGRCh38hg38GRCh38
GRCh3812111,034,165 - 111,350,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712111,471,969 - 111,788,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612109,956,212 - 110,272,739 (+)NCBINCBI36hg18NCBI36
Build 3412109,934,548 - 110,251,076NCBI
Celera12111,098,413 - 111,414,529 (+)NCBI
Cytogenetic Map12q24.11-q24.12NCBI
HuRef12108,667,813 - 108,803,094 (+)NCBIHuRef
CHM1_112111,439,881 - 111,756,318 (+)NCBICHM1_1
Cux2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21234,507,723 - 34,707,581 (+)NCBI
Rnor_6.0 Ensembl1240,018,937 - 40,219,291 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01240,016,774 - 40,221,067 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01241,893,143 - 42,092,024 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,850,093 - 35,910,414 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11235,727,879 - 35,773,518 (+)NCBI
Celera1236,188,363 - 36,371,360 (+)NCBICelera
Cytogenetic Map12q16NCBI
Cux2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,955,039 - 8,043,533 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,783,483 - 8,045,808 (+)NCBIChiLan1.0ChiLan1.0
CUX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112112,143,682 - 112,313,451 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12112,175,555 - 112,311,221 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012108,600,286 - 108,975,588 (+)NCBIMhudiblu_PPA_v0panPan3
CUX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,711,816 - 8,997,263 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,730,435 - 8,993,205 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,874,945 - 9,160,037 (+)NCBI
ROS_Cfam_1.0268,971,508 - 9,256,848 (+)NCBI
UMICH_Zoey_3.1268,928,111 - 9,212,941 (+)NCBI
UNSW_CanFamBas_1.0268,990,069 - 9,275,112 (+)NCBI
UU_Cfam_GSD_1.0268,943,481 - 9,228,574 (+)NCBI
Cux2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024405118155,419,639 - 155,516,332 (-)NCBI
SpeTri2.0NW_0049365583,970,114 - 4,060,326 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1432,311,751 - 32,587,204 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11432,311,781 - 32,587,194 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21434,262,426 - 34,582,740 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUX2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111106,462,877 - 106,602,847 (+)NCBI
Cux2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474720,784,323 - 21,021,090 (-)NCBI

Position Markers
Cux2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS
cM Map571.0UniSTS
Cux2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589271017124100176Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590173096124173175Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590413140124413285Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590413140124413285Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592682300126682419Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595085348129085464Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595286714129286920Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595317683129317856Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595317683129317856Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595317683129317856Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596172519130172667Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined596883692130883925Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined596883692130883925Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99801563126805880Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100527900134527900Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100527900134527900Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101194514135194514Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101725767135725963Mouse
14746986Manh58_mmandible shape 58 (mouse)5102308218136308218Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102806972136807131Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104435822138557193Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104567876138567876Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107829235141829348Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107829235141829348Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107829235141829348Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108614643126805880Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109090758139133150Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113172519138557193Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5113883692129555542Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119806972141714711Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2066
Count of miRNA genes:745
Interacting mature miRNAs:945
Transcripts:ENSMUST00000086317, ENSMUST00000100749, ENSMUST00000111752, ENSMUST00000125267, ENSMUST00000133760, ENSMUST00000134326, ENSMUST00000144069, ENSMUST00000154139, ENSMUST00000155396, ENSMUST00000156942, ENSMUST00000168288
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001312908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U45665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000086317   ⟹   ENSMUSP00000083497
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,860,216 - 122,047,825 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111752   ⟹   ENSMUSP00000107381
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,856,366 - 122,049,851 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,924,896 - 122,047,891 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133760
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,879,815 - 121,915,072 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134326   ⟹   ENSMUSP00000120095
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,887,421 - 122,002,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144069
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,879,821 - 121,895,381 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154139   ⟹   ENSMUSP00000114948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,884,754 - 122,050,102 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155396
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,895,409 - 121,916,734 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156942
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,873,089 - 121,874,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168288   ⟹   ENSMUSP00000130302
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,860,308 - 121,924,921 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5121,860,308 - 121,866,063 (-)Ensembl
RefSeq Acc Id: NM_001312908   ⟹   NP_001299837
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,998,279 - 122,187,914 (-)NCBI
GRCm385121,860,216 - 122,049,851 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007804   ⟹   NP_031830
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,998,279 - 122,185,888 (-)NCBI
GRCm385121,860,216 - 122,047,825 (-)NCBI
MGSCv375122,310,225 - 122,497,834 (-)RGD
Celera5118,950,598 - 119,138,874 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530157   ⟹   XP_006530220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,522 (-)NCBI
GRCm385121,860,216 - 122,050,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248166   ⟹   XP_011246468
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,522 (-)NCBI
GRCm385121,860,216 - 122,050,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248167   ⟹   XP_011246469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,448 (-)NCBI
GRCm385121,860,216 - 122,050,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248168   ⟹   XP_011246470
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,187,959 (-)NCBI
GRCm385121,860,216 - 122,049,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248169   ⟹   XP_011246471
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,186,703 (-)NCBI
GRCm385121,860,216 - 122,048,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248170   ⟹   XP_011246472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,185,824 (-)NCBI
GRCm385121,860,216 - 122,048,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248171   ⟹   XP_011246473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,522 (-)NCBI
GRCm385121,857,962 - 122,050,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248172   ⟹   XP_011246474
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,157,947 (-)NCBI
GRCm385121,860,216 - 122,020,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248173   ⟹   XP_011246475
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,448 (-)NCBI
GRCm385121,860,216 - 122,050,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248176   ⟹   XP_011246478
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,140,428 (-)NCBI
GRCm385121,860,216 - 122,002,368 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320655   ⟹   XP_017176144
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,033,439 (-)NCBI
GRCm385121,860,216 - 121,896,314 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254116   ⟹   XP_030109976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,522 (-)NCBI
GRCm385121,860,216 - 122,050,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254117   ⟹   XP_030109977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,522 (-)NCBI
GRCm385121,860,216 - 122,050,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254118   ⟹   XP_030109978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,188,448 (-)NCBI
GRCm385121,860,216 - 122,050,413 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254119   ⟹   XP_030109979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,187,959 (-)NCBI
GRCm385121,860,216 - 122,049,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254120   ⟹   XP_030109980
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,033,404 (-)NCBI
GRCm385121,860,216 - 121,896,314 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164774   ⟹   XP_036020667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,140,431 (-)NCBI
RefSeq Acc Id: XM_036164775   ⟹   XP_036020668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,996,025 - 122,140,427 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_031830   ⟸   NM_007804
- UniProtKB: P70298 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530220   ⟸   XM_006530157
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011246468   ⟸   XM_011248166
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246475   ⟸   XM_011248173
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246469   ⟸   XM_011248167
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246473   ⟸   XM_011248171
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246470   ⟸   XM_011248168
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246471   ⟸   XM_011248169
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246472   ⟸   XM_011248170
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246474   ⟸   XM_011248172
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246478   ⟸   XM_011248176
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017176144   ⟸   XM_017320655
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: NP_001299837   ⟸   NM_001312908
- UniProtKB: P70298 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109977   ⟸   XM_030254117
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030109978   ⟸   XM_030254118
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030109976   ⟸   XM_030254116
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109979   ⟸   XM_030254119
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030109980   ⟸   XM_030254120
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000083497   ⟸   ENSMUST00000086317
RefSeq Acc Id: ENSMUSP00000107381   ⟸   ENSMUST00000111752
RefSeq Acc Id: ENSMUSP00000114948   ⟸   ENSMUST00000154139
RefSeq Acc Id: ENSMUSP00000130302   ⟸   ENSMUST00000168288
RefSeq Acc Id: ENSMUSP00000120095   ⟸   ENSMUST00000134326
RefSeq Acc Id: XP_036020667   ⟸   XM_036164774
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036020668   ⟸   XM_036164775
- Peptide Label: isoform X8
Protein Domains
Homeobox

Promoters
RGD ID:6887946
Promoter ID:EPDNEW_M7424
Type:single initiation site
Name:Cux2_2
Description:Mus musculus cut-like homeobox 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7425  EPDNEW_M7426  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385121,916,823 - 121,916,883EPDNEW
RGD ID:6887948
Promoter ID:EPDNEW_M7425
Type:multiple initiation site
Name:Cux2_3
Description:Mus musculus cut-like homeobox 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7424  EPDNEW_M7426  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,002,362 - 122,002,422EPDNEW
RGD ID:6887950
Promoter ID:EPDNEW_M7426
Type:initiation region
Name:Cux2_1
Description:Mus musculus cut-like homeobox 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7424  EPDNEW_M7425  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,049,843 - 122,049,903EPDNEW
RGD ID:6837437
Promoter ID:MM_KWN:43914
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:ENSMUST00000100749
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,309,234 - 122,309,734 (-)MPROMDB
RGD ID:6837312
Promoter ID:MM_KWN:43916
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:OTTMUST00000060713
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365122,323,474 - 122,323,974 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107321 AgrOrtholog
Ensembl Genes ENSMUSG00000042589 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000083497 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107381 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114948 UniProtKB/TrEMBL
  ENSMUSP00000120095 UniProtKB/TrEMBL
  ENSMUSP00000130302 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000086317 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111752 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000134326 UniProtKB/TrEMBL
  ENSMUST00000154139 UniProtKB/TrEMBL
  ENSMUST00000168288 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.260.40 UniProtKB/Swiss-Prot
InterPro CUT_dom UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:13048 UniProtKB/Swiss-Prot
MGD MGI:107321 ENTREZGENE
NCBI Gene 13048 ENTREZGENE
Pfam CUT UniProtKB/Swiss-Prot
  Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cux2 PhenoGen
PROSITE CUT UniProtKB/Swiss-Prot
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CUT UniProtKB/Swiss-Prot
  HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47413 UniProtKB/Swiss-Prot
UniProt CUX2_MOUSE UniProtKB/Swiss-Prot
  D3YUK2_MOUSE UniProtKB/TrEMBL
  F6YIR2_MOUSE UniProtKB/TrEMBL
  P70298 ENTREZGENE
  Q3US40_MOUSE UniProtKB/TrEMBL
  Q3UVF5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6P1E6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Cux2  cut-like homeobox 2  1700051K22Rik  RIKEN cDNA 1700051K22 gene  Data Merged 737654 PROVISIONAL