Racgap1 (Rac GTPase-activating protein 1) - Rat Genome Database

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Gene: Racgap1 (Rac GTPase-activating protein 1) Mus musculus
Analyze
Symbol: Racgap1
Name: Rac GTPase-activating protein 1
RGD ID: 1314229
MGI Page MGI
Description: Predicted to enable several functions, including GTPase activator activity; phosphatidylinositol-3,4,5-trisphosphate binding activity; and tubulin binding activity. Involved in regulation of embryonic development. Acts upstream of or within neuroblast proliferation. Predicted to be located in several cellular components, including cleavage furrow; midbody; and spindle. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Predicted to be part of centralspindlin complex. Is expressed in several structures, including blastocyst; central nervous system; early embryo; neural retina; and nose. Orthologous to human RACGAP1 (Rac GTPase activating protein 1); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI227039; AI327394; Band; Band25; gtl1; gtl11; GTP; GTPase; male germ cell RacGap; MgcRa; MgcRacGAP; mKIAA1478
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm1859  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,518,377 - 99,549,537 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,518,377 - 99,549,537 (-)Ensembl
GRCm381599,620,496 - 99,651,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,620,496 - 99,651,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,450,927 - 99,482,052 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,448,530 - 99,479,655 (-)NCBImm8
Celera15101,775,878 - 101,807,252 (-)NCBICelera
Cytogenetic Map15F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
alpha-pinene  (ISO)
AM-251  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-D-glucosamine  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gallic acid  (ISO)
genistein  (ISO)
geraniol  (ISO)
hexadecanoic acid  (ISO)
indometacin  (ISO)
isoflavones  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
lucanthone  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methylphenidate  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
phenobarbital  (EXP)
PhIP  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP)
simvastatin  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zaragozic acid A  (EXP,ISO)

References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:9497316   PMID:10235109   PMID:10349636   PMID:10493933   PMID:10725249   PMID:10922068   PMID:10979956   PMID:11042159   PMID:11076861   PMID:11180952  
PMID:11217851   PMID:11287179   PMID:11775025   PMID:11942621   PMID:12477932   PMID:12520002   PMID:12590651   PMID:14610273   PMID:15226823   PMID:15251432   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16365040   PMID:16873377   PMID:16959247   PMID:17178910   PMID:17967808   PMID:18180334   PMID:18541143   PMID:18799693   PMID:19394428   PMID:20360068  
PMID:21041952   PMID:21267068   PMID:21677750   PMID:22683270   PMID:23696789   PMID:23997213   PMID:24355749   PMID:26410627   PMID:26496610   PMID:28535371   PMID:28671696   PMID:32098917  
PMID:32325033   PMID:32423815  


Genomics

Comparative Map Data
Racgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,518,377 - 99,549,537 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,518,377 - 99,549,537 (-)Ensembl
GRCm381599,620,496 - 99,651,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,620,496 - 99,651,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,450,927 - 99,482,052 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,448,530 - 99,479,655 (-)NCBImm8
Celera15101,775,878 - 101,807,252 (-)NCBICelera
Cytogenetic Map15F1NCBI
RACGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1249,976,923 - 50,033,136 (-)EnsemblGRCh38hg38GRCh38
GRCh381249,989,162 - 50,033,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,382,945 - 50,419,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,669,212 - 48,705,488 (-)NCBINCBI36hg18NCBI36
Build 341248,669,211 - 48,705,488NCBI
Celera1249,179,065 - 49,215,304 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,414,446 - 47,451,548 (-)NCBIHuRef
CHM1_11250,349,102 - 50,385,463 (-)NCBICHM1_1
Racgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,750,936 - 130,780,891 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7130,750,936 - 130,780,831 (-)Ensembl
Rnor_6.07141,277,303 - 141,308,849 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,277,312 - 141,307,233 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07138,713,215 - 138,728,271 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,366,356 - 138,395,716 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17138,443,204 - 138,463,026 (-)NCBI
Celera7127,232,693 - 127,262,334 (-)NCBICelera
Cytogenetic Map7q36NCBI
Racgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547581,134 - 616,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBIChiLan1.0ChiLan1.0
RACGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11239,625,763 - 39,660,040 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,625,796 - 39,672,256 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01238,729,885 - 38,766,063 (+)NCBIMhudiblu_PPA_v0panPan3
RACGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,689,914 - 4,718,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,689,483 - 4,727,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,541,242 - 41,569,279 (-)NCBI
ROS_Cfam_1.0274,737,980 - 4,766,051 (+)NCBI
UMICH_Zoey_3.1274,702,991 - 4,731,034 (+)NCBI
UNSW_CanFamBas_1.0274,692,808 - 4,720,859 (+)NCBI
UU_Cfam_GSD_1.02741,935,897 - 41,964,171 (-)NCBI
Racgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,468,262 - 65,499,692 (+)NCBI
SpeTri2.0NW_0049365127,665,144 - 7,696,615 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RACGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,904,707 - 15,943,614 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,894,314 - 15,943,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,400,485 - 16,403,961 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RACGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,218,987 - 46,260,477 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,220,090 - 46,254,602 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037199,866,951 - 199,902,603 (+)NCBIVero_WHO_p1.0
Racgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,268,879 - 2,303,305 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH126612  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,652,292 - 99,652,509UniSTSGRCm38
MGSCv371599,482,723 - 99,482,940UniSTSGRCm37
Celera15101,807,923 - 101,808,140UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15887.29UniSTS
RH136016  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,620,813 - 99,620,990UniSTSGRCm38
MGSCv371599,451,244 - 99,451,421UniSTSGRCm37
Celera15101,776,195 - 101,776,372UniSTS
Cytogenetic Map15F1UniSTS
AI327394  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,621,359 - 99,621,461UniSTSGRCm38
MGSCv371599,451,790 - 99,451,892UniSTSGRCm37
Celera15101,776,741 - 101,776,843UniSTS
Cytogenetic Map15F1UniSTS
Whitehead/MRC_RH15881.75UniSTS
UniSTS:237405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381599,621,233 - 99,621,459UniSTSGRCm38
MGSCv371599,451,664 - 99,451,890UniSTSGRCm37
Celera15101,776,615 - 101,776,841UniSTS
Cytogenetic Map15F1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597800000103100000Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597987052102988123Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2180
Count of miRNA genes:710
Interacting mature miRNAs:914
Transcripts:ENSMUST00000023756, ENSMUST00000109581, ENSMUST00000164983, ENSMUST00000165730, ENSMUST00000165745, ENSMUST00000168065, ENSMUST00000168834, ENSMUST00000168976, ENSMUST00000169700, ENSMUST00000169810, ENSMUST00000170369, ENSMUST00000171017, ENSMUST00000171702, ENSMUST00000171908
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001253809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB030252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF079974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF212320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF212321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX342028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX342531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX590318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY309801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY439051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023756   ⟹   ENSMUSP00000023756
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,518,378 - 99,549,537 (-)Ensembl
GRCm38.p6 Ensembl1599,620,497 - 99,651,656 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109581   ⟹   ENSMUSP00000105209
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,537,680 - 99,549,524 (-)Ensembl
GRCm38.p6 Ensembl1599,639,799 - 99,651,643 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164983   ⟹   ENSMUSP00000132471
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,534,036 - 99,549,493 (-)Ensembl
GRCm38.p6 Ensembl1599,636,155 - 99,651,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165730   ⟹   ENSMUSP00000130282
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,532,174 - 99,549,450 (-)Ensembl
GRCm38.p6 Ensembl1599,634,293 - 99,651,569 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165745
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,523,981 - 99,530,685 (-)Ensembl
GRCm38.p6 Ensembl1599,626,100 - 99,632,804 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168065   ⟹   ENSMUSP00000132732
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,526,499 - 99,537,698 (-)Ensembl
GRCm38.p6 Ensembl1599,628,618 - 99,639,817 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168834
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,535,340 - 99,549,463 (-)Ensembl
GRCm38.p6 Ensembl1599,637,459 - 99,651,582 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,530,040 - 99,532,655 (-)Ensembl
GRCm38.p6 Ensembl1599,632,159 - 99,634,774 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,524,343 - 99,549,470 (-)Ensembl
GRCm38.p6 Ensembl1599,626,462 - 99,651,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169810   ⟹   ENSMUSP00000130876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,530,024 - 99,549,533 (-)Ensembl
GRCm38.p6 Ensembl1599,632,143 - 99,651,652 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,526,439 - 99,549,463 (-)Ensembl
GRCm38.p6 Ensembl1599,628,558 - 99,651,582 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,526,545 - 99,536,149 (-)Ensembl
GRCm38.p6 Ensembl1599,628,664 - 99,638,268 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171702   ⟹   ENSMUSP00000126417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,518,377 - 99,549,524 (-)Ensembl
GRCm38.p6 Ensembl1599,620,496 - 99,651,643 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171908   ⟹   ENSMUSP00000128892
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1599,535,554 - 99,549,493 (-)Ensembl
GRCm38.p6 Ensembl1599,637,673 - 99,651,612 (-)Ensembl
RefSeq Acc Id: NM_001253808   ⟹   NP_001240737
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,537 (-)NCBI
GRCm381599,620,496 - 99,651,656 (-)ENTREZGENE
Celera15101,775,878 - 101,807,287 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001253809   ⟹   NP_001240738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,537 (-)NCBI
GRCm381599,620,496 - 99,651,656 (-)ENTREZGENE
Celera15101,775,878 - 101,807,287 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_012025   ⟹   NP_036155
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,537 (-)NCBI
GRCm381599,620,496 - 99,651,656 (-)ENTREZGENE
MGSCv371599,450,927 - 99,482,052 (-)RGD
Celera15101,775,878 - 101,807,287 (-)ENTREZGENE
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006521019   ⟹   XP_006521082
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
GRCm381599,620,496 - 99,651,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006521020   ⟹   XP_006521083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
GRCm381599,620,496 - 99,651,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011245646   ⟹   XP_011243948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
GRCm381599,620,496 - 99,651,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248592   ⟹   XP_030104452
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
GRCm381599,620,496 - 99,651,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159435   ⟹   XP_036015328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
RefSeq Acc Id: XM_036159436   ⟹   XP_036015329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391599,518,377 - 99,549,534 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001240737 (Get FASTA)   NCBI Sequence Viewer  
  NP_001240738 (Get FASTA)   NCBI Sequence Viewer  
  NP_036155 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521082 (Get FASTA)   NCBI Sequence Viewer  
  XP_006521083 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243948 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104452 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015328 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015329 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD40487 (Get FASTA)   NCBI Sequence Viewer  
  AAG43539 (Get FASTA)   NCBI Sequence Viewer  
  AAG43540 (Get FASTA)   NCBI Sequence Viewer  
  AAH10715 (Get FASTA)   NCBI Sequence Viewer  
  BAA90248 (Get FASTA)   NCBI Sequence Viewer  
  BAE25967 (Get FASTA)   NCBI Sequence Viewer  
  BAE32931 (Get FASTA)   NCBI Sequence Viewer  
  BAE38446 (Get FASTA)   NCBI Sequence Viewer  
  BAE38561 (Get FASTA)   NCBI Sequence Viewer  
  BAE40005 (Get FASTA)   NCBI Sequence Viewer  
  BAE40010 (Get FASTA)   NCBI Sequence Viewer  
  BAE40131 (Get FASTA)   NCBI Sequence Viewer  
  BAE40528 (Get FASTA)   NCBI Sequence Viewer  
  CAD20701 (Get FASTA)   NCBI Sequence Viewer  
  CAD20715 (Get FASTA)   NCBI Sequence Viewer  
  CAD61972 (Get FASTA)   NCBI Sequence Viewer  
  EDL04119 (Get FASTA)   NCBI Sequence Viewer  
  EDL04120 (Get FASTA)   NCBI Sequence Viewer  
  EDL04121 (Get FASTA)   NCBI Sequence Viewer  
  Q9WVM1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036155   ⟸   NM_012025
- UniProtKB: Q9WVM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240738   ⟸   NM_001253809
- UniProtKB: Q9WVM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240737   ⟸   NM_001253808
- UniProtKB: Q9WVM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006521083   ⟸   XM_006521020
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006521082   ⟸   XM_006521019
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011243948   ⟸   XM_011245646
- Peptide Label: isoform X1
- UniProtKB: Q9WVM1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030104452   ⟸   XM_030248592
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000132471   ⟸   ENSMUST00000164983
RefSeq Acc Id: ENSMUSP00000128892   ⟸   ENSMUST00000171908
RefSeq Acc Id: ENSMUSP00000126417   ⟸   ENSMUST00000171702
RefSeq Acc Id: ENSMUSP00000130282   ⟸   ENSMUST00000165730
RefSeq Acc Id: ENSMUSP00000105209   ⟸   ENSMUST00000109581
RefSeq Acc Id: ENSMUSP00000132732   ⟸   ENSMUST00000168065
RefSeq Acc Id: ENSMUSP00000023756   ⟸   ENSMUST00000023756
RefSeq Acc Id: ENSMUSP00000130876   ⟸   ENSMUST00000169810
RefSeq Acc Id: XP_036015329   ⟸   XM_036159436
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015328   ⟸   XM_036159435
- Peptide Label: isoform X1
Protein Domains
Rho-GAP

Promoters
RGD ID:6826397
Promoter ID:MM_KWN:19696
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell
Transcripts:NM_012025,   UC007XPY.1,   UC007XPZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361599,481,851 - 99,482,351 (-)MPROMDB
RGD ID:8685036
Promoter ID:EPDNEW_M20531
Type:initiation region
Name:Racgap1_1
Description:Mus musculus Rac GTPase-activating protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381599,651,612 - 99,651,672EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349423 AgrOrtholog
Ensembl Genes ENSMUSG00000023015 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000023756 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105209 UniProtKB/TrEMBL
  ENSMUSP00000126417 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128892 UniProtKB/TrEMBL
  ENSMUSP00000130282 UniProtKB/TrEMBL
  ENSMUSP00000130876 UniProtKB/TrEMBL
  ENSMUSP00000132471 UniProtKB/TrEMBL
  ENSMUSP00000132732 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023756 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109581 UniProtKB/TrEMBL
  ENSMUST00000164983 UniProtKB/TrEMBL
  ENSMUST00000165730 UniProtKB/TrEMBL
  ENSMUST00000168065 UniProtKB/TrEMBL
  ENSMUST00000169810 UniProtKB/TrEMBL
  ENSMUST00000171702 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000171908 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/Swiss-Prot
InterPro PE/DAG-bd UniProtKB/Swiss-Prot
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot
  RhoGAP_dom UniProtKB/Swiss-Prot
KEGG Report mmu:26934 UniProtKB/Swiss-Prot
MGD MGI:1349423 ENTREZGENE
NCBI Gene 26934 ENTREZGENE
Pfam C1_1 UniProtKB/Swiss-Prot
  RhoGAP UniProtKB/Swiss-Prot
PhenoGen Racgap1 PhenoGen
PROSITE RHOGAP UniProtKB/Swiss-Prot
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot
SMART RhoGAP UniProtKB/Swiss-Prot
  SM00109 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48350 UniProtKB/Swiss-Prot
UniProt E9Q071_MOUSE UniProtKB/TrEMBL
  E9Q1Y6_MOUSE UniProtKB/TrEMBL
  E9Q851_MOUSE UniProtKB/TrEMBL
  E9Q9N9_MOUSE UniProtKB/TrEMBL
  F6WD40_MOUSE UniProtKB/TrEMBL
  Q9WVM1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3THR5 UniProtKB/Swiss-Prot
  Q3TI41 UniProtKB/Swiss-Prot
  Q3TM81 UniProtKB/Swiss-Prot