Elf5 (E74-like factor 5) - Rat Genome Database

Name: Elf5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Elf5 (E74-like factor 5) Mus musculus

Analyze

Symbol:

Elf5

Name:

E74-like factor 5

RGD ID:

1314144

MGI Page

MGI

Description:

Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including ectodermal cell fate commitment; mammary gland epithelial cell differentiation; and negative regulation of cell differentiation involved in embryonic placenta development. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; extraembryonic component; genitourinary system; integumental system; and respiratory system epithelium. Orthologous to human ELF5 (E74 like ETS transcription factor 5).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Epithelium specific Ets-2; ESE-; ESE-2; ESE-5; ESE-5.; ETS-related transcription factor Elf-5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELF5 (E74 like ETS transcription factor 5)	HGNC	EggNOG, Ensembl, HGNC, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Elf5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elf5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELF5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELF5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elf5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELF5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELF5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elf5 (E74 like ETS transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Elf5 (E74 like ETS transcription factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ELF5 (E74 like ETS transcription factor 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	svh-5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	elf5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	103,242,443 - 103,281,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	103,242,033 - 103,281,334 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	103,412,098 - 103,450,989 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	103,411,688 - 103,450,989 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	103,252,255 - 103,291,146 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	103,224,916 - 103,251,824 (+)	NCBI		MGSCv36	mm8
Celera	2	104,658,179 - 104,697,597 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

3,7-dihydropurine-6-thione (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

amitrole (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

Benzo[k]fluoranthene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

cantharidin (EXP)

carbon nanotube (EXP)

CGP 52608 (ISO)

chlordecone (EXP)

chlorpyrifos (EXP)

ciglitazone (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

diethylstilbestrol (EXP)

dioxygen (EXP)

diuron (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

ethanol (EXP)

folic acid (ISO)

genistein (ISO)

GW 4064 (EXP)

hydroquinone (ISO)

lead diacetate (EXP)

mercaptopurine (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methimazole (ISO)

mifepristone (ISO)

nickel atom (ISO)

panobinostat (ISO)

phenylmercury acetate (ISO)

promegestone (ISO)

purine-6-thiol (ISO)

SB 431542 (ISO)

sodium arsenite (EXP)

sotorasib (ISO)

sulfadimethoxine (ISO)

tert-butyl hydroperoxide (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

titanium dioxide (EXP)

trametinib (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IBA)

ectoderm development (IMP)

ectodermal cell fate commitment (IGI)

mammary gland epithelial cell differentiation (IGI)

negative regulation of cell differentiation involved in embryonic placenta development (IMP)

positive regulation of transcription by RNA polymerase II (IDA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

somatic stem cell population maintenance (IMP)

trophoblast giant cell differentiation (IMP)

Cellular Component

cytoplasm (IDA)

nucleus (IBA,IDA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IDA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IDA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal ectoderm development (IAGP)

abnormal lactation (IAGP)

abnormal mammary gland development (IAGP)

abnormal mammary gland growth during pregnancy (IAGP)

abnormal mesenchyme morphology (IAGP)

abnormal trophoblast giant cell morphology (IAGP)

absent chorion (IAGP)

absent extraembryonic ectoderm (IAGP)

absent mesoderm (IAGP)

decreased embryo size (IAGP)

decreased survivor rate (IAGP)

embryonic growth retardation (IAGP)

embryonic lethality between implantation and somite formation, complete penetrance (IAGP)

embryonic lethality during organogenesis, complete penetrance (IAGP)

embryonic lethality, complete penetrance (IAGP)

lactation failure (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9840936	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12477932	PMID:15489334	PMID:15650748	PMID:15655699	PMID:15829518	PMID:16141072	PMID:16141073
PMID:16229011	PMID:16469767	PMID:16602821	PMID:16704374	PMID:17394208	PMID:17609113	PMID:17907201	PMID:17938949	PMID:18287559	PMID:18316476	PMID:18544451	PMID:18836439
PMID:18938165	PMID:19000842	PMID:19269284	PMID:20211142	PMID:20335364	PMID:20831799	PMID:20880987	PMID:20932939	PMID:20949099	PMID:21823211	PMID:21873635	PMID:21896659
PMID:22020251	PMID:22056786	PMID:22516201	PMID:22523003	PMID:22588720	PMID:22711520	PMID:22951731	PMID:22988430	PMID:23086238	PMID:23462470	PMID:23552073	PMID:23825703
PMID:24120664	PMID:24190884	PMID:24859262	PMID:24952961	PMID:25446535	PMID:25588837	PMID:26097038	PMID:26329601	PMID:26584622	PMID:26695351	PMID:26717410	PMID:28215940
PMID:28287091	PMID:28650975	PMID:28839193	PMID:29532590	PMID:29884675	PMID:30194919	PMID:31315026	PMID:32284542	PMID:33842485	PMID:35020897	PMID:35478964	PMID:35711069
PMID:36094016	PMID:36116511	PMID:36348499	PMID:36542237	PMID:37307441	PMID:37838739	PMID:37980532	PMID:38510127

Genomics

Comparative Map Data

Elf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	103,242,443 - 103,281,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	103,242,033 - 103,281,334 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	103,412,098 - 103,450,989 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	103,411,688 - 103,450,989 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	103,252,255 - 103,291,146 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	103,224,916 - 103,251,824 (+)	NCBI		MGSCv36	mm8
Celera	2	104,658,179 - 104,697,597 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.43	NCBI

ELF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	34,478,791 - 34,513,794 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	34,478,791 - 34,525,193 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	34,500,338 - 34,535,341 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	34,456,918 - 34,491,906 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	34,456,917 - 34,489,922	NCBI
Celera	11	34,647,528 - 34,682,543 (-)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	34,197,704 - 34,232,735 (-)	NCBI		HuRef
CHM1_1	11	34,499,338 - 34,534,346 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	34,615,634 - 34,650,642 (-)	NCBI		T2T-CHM13v2.0

Elf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,264,460 - 110,291,926 (+)	NCBI		GRCr8
mRatBN7.2	3	89,808,837 - 89,836,977 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	89,797,880 - 89,836,973 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	93,303,076 - 93,330,417 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	101,902,134 - 101,929,483 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	99,732,989 - 99,760,479 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,333,514 - 93,374,454 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,351,619 - 93,371,656 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	99,988,281 - 100,016,439 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	88,691,632 - 88,720,167 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	88,589,258 - 88,616,545 (-)	NCBI
Celera	3	88,877,696 - 88,905,823 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

Elf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	11,750,774 - 11,780,310 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	11,751,073 - 11,779,313 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	36,701,083 - 36,734,109 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	36,705,954 - 36,738,909 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	34,453,550 - 34,486,519 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	34,329,889 - 34,364,852 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	34,329,889 - 34,362,770 (-)	Ensembl	panpan1.1		panPan2

ELF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	33,342,962 - 33,376,012 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	33,332,324 - 33,374,828 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	32,948,821 - 32,981,834 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	33,953,670 - 33,986,711 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	33,942,913 - 33,986,698 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	33,513,404 - 33,546,418 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	33,105,247 - 33,138,256 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	33,740,636 - 33,773,663 (+)	NCBI		UU_Cfam_GSD_1.0

Elf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	30,444,654 - 30,471,208 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	3,569,452 - 3,596,004 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	3,569,435 - 3,595,991 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	26,443,977 - 26,485,903 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	26,443,979 - 26,486,802 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	28,811,152 - 28,852,566 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	30,746,054 - 30,785,670 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	127,867,510 - 127,896,312 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	12,649,643 - 12,675,711 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	12,648,420 - 12,675,727 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Elf5
14 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1283
Count of miRNA genes:	488
Interacting mature miRNAs:	584
Transcripts:	ENSMUST00000028609, ENSMUST00000123793, ENSMUST00000126290, ENSMUST00000137973, ENSMUST00000152055, ENSMUST00000164172, ENSMUST00000171693
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357881	Estoq1_m	embryo survival total QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357454	Kidq1_m	kidney weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357436	Splq1_m	spleen weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
39128209	Lwq14_m	liver weight QTL 14 (mouse)					2	20897778	118894840	Mouse
1558899	Egq1_m	early growth QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558966	W10q9_m	weight 10 weeks QTL 9 (mouse)			Not determined		2	20897778	118894840	Mouse
1558915	W3q1_m	weight 3 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558738	W6q1_m	weight 6 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357681	Hrtq1_m	heart weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
4141236	Hbnr5_m	Heligmosomoides bakeri nematode resistance 5 (mouse)			Not determined			31214567	105143570	Mouse
1301109	Dntcs2_m	dental caries susceptibility 2 (mouse)			Not determined		2	40885493	114910165	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
1357577	Trmq3_m	T cell ratio modifier QTL 3 (mouse)			Not determined		2	60520612	119355518	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
4142088	Parms1_m	patched associated RMS 1 (mouse)			Not determined			74524117	114123532	Mouse
11528549	Sluc31_m	susceptibility to lung cancer 31 (mouse)					2	74524117	129213005	Mouse
1301374	Cplaq7_m	circadian period of locomotor activity 7 (mouse)			Not determined		2	76421483	110421651	Mouse
10043894	Bw22_m	body weight QTL 22 (mouse)			Not determined		2	80895334	114895334	Mouse
15092054	Egrme5_m	early growth rate, maternal effect 5 (mouse)					2	82190187	118004745	Mouse
1558901	Skmw8_m	skeletal muscle weight 8 (mouse)			Not determined		2	84008488	118008593	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
11049565	Lmr28g_m	leishmaniasis resistance 28g (mouse)					2	86095716	120095823	Mouse
11038697	Ltpr2d_m	Leishmania tropica response 2d (mouse)					2	86095716	120095823	Mouse
11038698	Ltpr2c_m	Leishmania tropica response 2c (mouse)					2	86095716	120095823	Mouse
1300852	Lmr14_m	leishmaniasis resistance 14 (mouse)			Not determined		2	86095716	120095823	Mouse
1301834	Bits1_m	bitterness sensitivity 1 (mouse)			Not determined		2	87440643	121440778	Mouse
11532731	Sluc31a_m	susceptibility to lung cancer 31a (mouse)					2	88015003	122015170	Mouse
4142223	Femwf4_m	femur work to failure 4 (mouse)			Not determined			88143423	122143570	Mouse
1301098	Cd8mts3_m	CD8 memory T cell subset 3 (mouse)			Not determined		2	91089974	125090104	Mouse
1301909	Smdq2_m	segregation of mitochondrial DNA QTL 2 (mouse)			Not determined		2	92778465	126778607	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
4141448	Mpaps1_m	microphthalmia anophthalmia susceptibility 1 (mouse)			Not determined			97028557	112115196	Mouse
11049569	Lmr28d_m	leishmaniasis resistance 28d (mouse)					2	97123370	131123532	Mouse
11049568	Lmr28c_m	leishmaniasis resistance 28c (mouse)					2	97123370	131123532	Mouse
12904935	Edlmmq2_m	extensor digitorum longus muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
12904954	Gmmq2_m	gastrocnemius muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
4141802	Ignpq1_m	IgA nephropathy QTL 1 (mouse)			Not determined		2	100824060	134824269	Mouse
1302203	Gvhd3_m	graft-versus host disease 3 (mouse)			Not determined		2	100942930	134943090	Mouse
1301330	Tbbmd2_m	total body bone mineral density 2 (mouse)			Not determined		2	100942930	134943090	Mouse
1302071	Fembrs1_m	femur breaking strength 1 (mouse)			Not determined		2	100942930	134943090	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
11041906	Lmr28a_m	leishmaniasis resistance 28a (mouse)					2	103095716	129213005	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_010125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006498705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF049702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK132484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK145214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL773505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL954374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC012424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000028609 ⟹ ENSMUSP00000028609

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,254,407 - 103,281,334 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,424,062 - 103,450,989 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000123793

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,277,224 - 103,279,360 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,446,879 - 103,449,015 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000126290 ⟹ ENSMUSP00000118565

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,255,173 - 103,279,376 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,424,828 - 103,449,031 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000137973

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,242,058 - 103,275,633 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,411,713 - 103,445,288 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000152055

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,279,083 - 103,280,168 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,448,738 - 103,449,823 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000164172 ⟹ ENSMUSP00000126941

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,242,033 - 103,281,331 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,411,688 - 103,450,986 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000171693 ⟹ ENSMUSP00000131940

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,254,471 - 103,280,186 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,424,126 - 103,449,841 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000239273 ⟹ ENSMUSP00000159212

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	103,242,033 - 103,281,329 (+)	Ensembl
GRCm38.p6 Ensembl	2	103,411,688 - 103,450,984 (+)	Ensembl

RefSeq Acc Id:

NM_001145813 ⟹ NP_001139285

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	103,242,443 - 103,281,334 (+)	NCBI
GRCm38	2	103,412,098 - 103,450,989 (+)	NCBI
MGSCv37	2	103,252,255 - 103,291,146 (+)	RGD
Celera	2	104,658,179 - 104,697,597 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

AGTTCAACCTGGCGGGACAAATGAACTGAGGGTGATGTTGGACTCCGTAACCCATAGCACCTTC
CTGCCCAACGCATCCTTCTGTGACCCCCTGATGCCTTGGACCGATCTGTTCAGCAATGAAGACT
ACTACCCTGCCTTTGAGCATCAGACAGCCTGTGATTCCTACTGGACATCAGTGCACCCTGAATA
CTGGACCAAGCGCCATGTCTGGGAATGGCTCCAATTCTGCTGCGACCAGTACAAGCTTGATGCC
AACTGCATCTCCTTCTGTCACTTCAACATCAGCGGCCTGCAGCTCTGCAGCATGACGCAGGAGG
AGTTCATTGAGGCAGCCGGCATCTGTGGGGAGTACCTGTACTTCATTCTCCAGAACATTCGCTC
GCAAGGTTACTCCTTTTTCAATGATGCTGAAGAGACCAAGACTGGCATCAAAGACTATGCTGAT
TCCAGTTGCTTGAAAACAAGTGGCATCAAGAGTCAAGACTGTCACAGCCGAACAAGCCTCCAAA
GTTCTCACCTGTGGGAATTTGTCAGAGACTTGCTGCTGTCCCCTGAAGAGAACTGTGGCATCCT
GGAATGGGAAGACAGGGAGCAGGGCATTTTCCGAGTGGTTAAGTCAGAAGCCCTGGCAAAGATG
TGGGGACAAAGGAAGAAGAATGACAGGATGACGTACGAGAAGCTGAGCCGAGCCCTGAGATACT
ACTATAAAACGGGAATTCTGGAGCGGGTTGACCGGAGGTTAGTGTACAAATTTGGAAAGAACGC
GCACGGGTGGCAGGAAGAGAAACTCTGATGGACACCGGACACCAGGCTCATTTGATGGATTTCT
GTTGTTGGAAACAATCAGATCAAACTAGACATTTGAAAGTCTCCCTCCTCCCCCTCCTCCCCCT
CCTCCCCCTCCTCTTCTTCCTCCCCCTCCTCCTCTTCAAAACCTACAAACACACTGATAAAATT
TCTGCATGTCTCAGCTTACATTTGAATTCAGTTGTTGTCTATTGGGGCGATGCCATCAGCCCTT
AAGCAATCGTCTTCATCCCAAGGGGGAGGAAGGGATGGTCTTGTGGCAACTTGGTGTGACACTG
TCTCCTTAATGAAGTGTTTGGAGCTAAGGGAGCCAGTGTTATGGGTGCTGTTTCACAAGAGGAC
CCGTTGCACCATTAAGACACACGATCCTCCCGTTCCAGGGGTTCTGAGCGGTCGACTGAGGCAG
CTTGCCTGTGGTTAGTTTTTAGGAAAGGGTGATGTAAGACTTCCTTGCTTTAGATTTGAAATTA
TCACAGTTATATTCCATAGAAGAATTTTTAATTAAAAAAATTTTAGTGGCTAAGCCACTAAACT
GGGACCTAATTGGATGTAGCCTAAGTTACTAATAAGTCTCTTAACCAGATCACCATTTCCAACC
ACTTAGCCACAGTCACTTGATCCACGGCCAATCCTTCTGAACTTAACATCCTTGTAGTTAGTCA
CCTTGGGAATTGCTACCTAGATTGTTACCCCCTTCACCTCACTGGTGGCTATCATCAGGTCTAC
AGTGACCTGATCAACAGACATGTGCATTAATTTCTAAATCACTGCTGTGCCTATGATTCAAACC
GTCAGCGTGTTCAGTTTATTGATTCTCTCTGAGGTCGGAATTTATTGATTCTCTCTGAGGCTAA
GACATTAAACCTTTACCAAGCAGAGAACGTCCTAACAAGCCACGATAGCCGAACACAGCATCGA
TCTCTTCTCTTTTCTGATGAATACTCAAACTTTCCAACATATTCTCTTCACAAAAGTAAAGACA
GTGAATTTACATCAATCAACGTTCATGGGTTAAAGTCTGCACTGACATTTCCTTGTCTGCCGTT
GCATGCCGTTGGCATGCAAGGTGTTAATGACCTGCAACATGGTGGAGTGCCCTGAACCCTAACT
TCCCCAGAGTTGGGACTGTCTAGTGACCGGCACTGAATAGCAATGCAGGCTGAAGACCTCCAGG
TTTAGAATTTAACCTCAAAAGTAACTTGTTTTTAAAAAGAAATGTGAATTACTGTAAAATAATC
TATTTTTGGATTCGTGTGTTTTTCAGGTGGATATAGTTTATAAACAATGTGAATAAAAAATATT
TAACATGTTCAAA

hide sequence

RefSeq Acc Id:

NM_010125 ⟹ NP_034255

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	103,254,413 - 103,281,334 (+)	NCBI
GRCm38	2	103,424,068 - 103,450,989 (+)	NCBI
MGSCv37	2	103,252,255 - 103,291,146 (+)	RGD
Celera	2	104,658,179 - 104,697,597 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

GTCACTTATATCACACGGCTACAGGTGCCTTTATTTCTACAGTCCGCTGGTGCTGGGAGCGCGC
TTGCCTTCTCTTGCCTTGAAAGCCTTCTGTCTGGACCTAGCCACCACTTGTCTTCACGGTGATG
TTGGACTCCGTAACCCATAGCACCTTCCTGCCCAACGCATCCTTCTGTGACCCCCTGATGCCTT
GGACCGATCTGTTCAGCAATGAAGACTACTACCCTGCCTTTGAGCATCAGACAGCCTGTGATTC
CTACTGGACATCAGTGCACCCTGAATACTGGACCAAGCGCCATGTCTGGGAATGGCTCCAATTC
TGCTGCGACCAGTACAAGCTTGATGCCAACTGCATCTCCTTCTGTCACTTCAACATCAGCGGCC
TGCAGCTCTGCAGCATGACGCAGGAGGAGTTCATTGAGGCAGCCGGCATCTGTGGGGAGTACCT
GTACTTCATTCTCCAGAACATTCGCTCGCAAGGTTACTCCTTTTTCAATGATGCTGAAGAGACC
AAGACTGGCATCAAAGACTATGCTGATTCCAGTTGCTTGAAAACAAGTGGCATCAAGAGTCAAG
ACTGTCACAGCCGAACAAGCCTCCAAAGTTCTCACCTGTGGGAATTTGTCAGAGACTTGCTGCT
GTCCCCTGAAGAGAACTGTGGCATCCTGGAATGGGAAGACAGGGAGCAGGGCATTTTCCGAGTG
GTTAAGTCAGAAGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAGAATGACAGGATGACGTACG
AGAAGCTGAGCCGAGCCCTGAGATACTACTATAAAACGGGAATTCTGGAGCGGGTTGACCGGAG
GTTAGTGTACAAATTTGGAAAGAACGCGCACGGGTGGCAGGAAGAGAAACTCTGATGGACACCG
GACACCAGGCTCATTTGATGGATTTCTGTTGTTGGAAACAATCAGATCAAACTAGACATTTGAA
AGTCTCCCTCCTCCCCCTCCTCCCCCTCCTCCCCCTCCTCTTCTTCCTCCCCCTCCTCCTCTTC
AAAACCTACAAACACACTGATAAAATTTCTGCATGTCTCAGCTTACATTTGAATTCAGTTGTTG
TCTATTGGGGCGATGCCATCAGCCCTTAAGCAATCGTCTTCATCCCAAGGGGGAGGAAGGGATG
GTCTTGTGGCAACTTGGTGTGACACTGTCTCCTTAATGAAGTGTTTGGAGCTAAGGGAGCCAGT
GTTATGGGTGCTGTTTCACAAGAGGACCCGTTGCACCATTAAGACACACGATCCTCCCGTTCCA
GGGGTTCTGAGCGGTCGACTGAGGCAGCTTGCCTGTGGTTAGTTTTTAGGAAAGGGTGATGTAA
GACTTCCTTGCTTTAGATTTGAAATTATCACAGTTATATTCCATAGAAGAATTTTTAATTAAAA
AAATTTTAGTGGCTAAGCCACTAAACTGGGACCTAATTGGATGTAGCCTAAGTTACTAATAAGT
CTCTTAACCAGATCACCATTTCCAACCACTTAGCCACAGTCACTTGATCCACGGCCAATCCTTC
TGAACTTAACATCCTTGTAGTTAGTCACCTTGGGAATTGCTACCTAGATTGTTACCCCCTTCAC
CTCACTGGTGGCTATCATCAGGTCTACAGTGACCTGATCAACAGACATGTGCATTAATTTCTAA
ATCACTGCTGTGCCTATGATTCAAACCGTCAGCGTGTTCAGTTTATTGATTCTCTCTGAGGTCG
GAATTTATTGATTCTCTCTGAGGCTAAGACATTAAACCTTTACCAAGCAGAGAACGTCCTAACA
AGCCACGATAGCCGAACACAGCATCGATCTCTTCTCTTTTCTGATGAATACTCAAACTTTCCAA
CATATTCTCTTCACAAAAGTAAAGACAGTGAATTTACATCAATCAACGTTCATGGGTTAAAGTC
TGCACTGACATTTCCTTGTCTGCCGTTGCATGCCGTTGGCATGCAAGGTGTTAATGACCTGCAA
CATGGTGGAGTGCCCTGAACCCTAACTTCCCCAGAGTTGGGACTGTCTAGTGACCGGCACTGAA
TAGCAATGCAGGCTGAAGACCTCCAGGTTTAGAATTTAACCTCAAAAGTAACTTGTTTTTAAAA
AGAAATGTGAATTACTGTAAAATAATCTATTTTTGGATTCGTGTGTTTTTCAGGTGGATATAGT
TTATAAACAATGTGAATAAAAAATATTTAACATGTTCAAA

hide sequence

RefSeq Acc Id:

XM_006498705 ⟹ XP_006498768

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	103,255,140 - 103,281,334 (+)	NCBI
GRCm38	2	103,424,794 - 103,450,989 (+)	NCBI

Sequence:

show sequence

CTTATCAGTCTGTATGCGTTCAGGGGTTTGTGCGCATTTGCCCCCTACTGGCAGCAACTGGAAA
CACATGCTCTCCCGCATCTGCGTTAAGGGTGATGTTGGACTCCGTAACCCATAGCACCTTCCTG
CCCAACGCATCCTTCTGTGACCCCCTGATGCCTTGGACCGATCTGTTCAGCAATGAAGACTACT
ACCCTGCCTTTGAGCATCAGACAGCCTGTGATTCCTACTGGACATCAGTGCACCCTGAATACTG
GACCAAGCGCCATGTCTGGGAATGGCTCCAATTCTGCTGCGACCAGTACAAGCTTGATGCCAAC
TGCATCTCCTTCTGTCACTTCAACATCAGCGGCCTGCAGCTCTGCAGCATGACGCAGGAGGAGT
TCATTGAGGCAGCCGGCATCTGTGGGGAGTACCTGTACTTCATTCTCCAGAACATTCGCTCGCA
AGGTTACTCCTTTTTCAATGATGCTGAAGAGACCAAGACTGGCATCAAAGACTATGCTGATTCC
AGTTGCTTGAAAACAAGTGGCATCAAGAGTCAAGACTGTCACAGCCGAACAAGCCTCCAAAGTT
CTCACCTGTGGGAATTTGTCAGAGACTTGCTGCTGTCCCCTGAAGAGAACTGTGGCATCCTGGA
ATGGGAAGACAGGGAGCAGGGCATTTTCCGAGTGGTTAAGTCAGAAGCCCTGGCAAAGATGTGG
GGACAAAGGAAGAAGAATGACAGGATGACGTACGAGAAGCTGAGCCGAGCCCTGAGATACTACT
ATAAAACGGGAATTCTGGAGCGGGTTGACCGGAGGTTAGTGTACAAATTTGGAAAGAACGCGCA
CGGGTGGCAGGAAGAGAAACTCTGATGGACACCGGACACCAGGCTCATTTGATGGATTTCTGTT
GTTGGAAACAATCAGATCAAACTAGACATTTGAAAGTCTCCCTCCTCCCCCTCCTCCCCCTCCT
CCCCCTCCTCTTCTTCCTCCCCCTCCTCCTCTTCAAAACCTACAAACACACTGATAAAATTTCT
GCATGTCTCAGCTTACATTTGAATTCAGTTGTTGTCTATTGGGGCGATGCCATCAGCCCTTAAG
CAATCGTCTTCATCCCAAGGGGGAGGAAGGGATGGTCTTGTGGCAACTTGGTGTGACACTGTCT
CCTTAATGAAGTGTTTGGAGCTAAGGGAGCCAGTGTTATGGGTGCTGTTTCACAAGAGGACCCG
TTGCACCATTAAGACACACGATCCTCCCGTTCCAGGGGTTCTGAGCGGTCGACTGAGGCAGCTT
GCCTGTGGTTAGTTTTTAGGAAAGGGTGATGTAAGACTTCCTTGCTTTAGATTTGAAATTATCA
CAGTTATATTCCATAGAAGAATTTTTAATTAAAAAAATTTTAGTGGCTAAGCCACTAAACTGGG
ACCTAATTGGATGTAGCCTAAGTTACTAATAAGTCTCTTAACCAGATCACCATTTCCAACCACT
TAGCCACAGTCACTTGATCCACGGCCAATCCTTCTGAACTTAACATCCTTGTAGTTAGTCACCT
TGGGAATTGCTACCTAGATTGTTACCCCCTTCACCTCACTGGTGGCTATCATCAGGTCTACAGT
GACCTGATCAACAGACATGTGCATTAATTTCTAAATCACTGCTGTGCCTATGATTCAAACCGTC
AGCGTGTTCAGTTTATTGATTCTCTCTGAGGTCGGAATTTATTGATTCTCTCTGAGGCTAAGAC
ATTAAACCTTTACCAAGCAGAGAACGTCCTAACAAGCCACGATAGCCGAACACAGCATCGATCT
CTTCTCTTTTCTGATGAATACTCAAACTTTCCAACATATTCTCTTCACAAAAGTAAAGACAGTG
AATTTACATCAATCAACGTTCATGGGTTAAAGTCTGCACTGACATTTCCTTGTCTGCCGTTGCA
TGCCGTTGGCATGCAAGGTGTTAATGACCTGCAACATGGTGGAGTGCCCTGAACCCTAACTTCC
CCAGAGTTGGGACTGTCTAGTGACCGGCACTGAATAGCAATGCAGGCTGAAGACCTCCAGGTTT
AGAATTTAACCTCAAAAGTAACTTGTTTTTAAAAAGAAATGTGAATTACTGTAAAATAATCTAT
TTTTGGATTCGTGTGTTTTTCAGGTGGATATAGTTTATAAACAATGTGAATAAAAAATATTTAA
CATGTTCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001139285	(Get FASTA)	NCBI Sequence Viewer
	NP_034255	(Get FASTA)	NCBI Sequence Viewer
	XP_006498768	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC79754	(Get FASTA)	NCBI Sequence Viewer
	AAH12424	(Get FASTA)	NCBI Sequence Viewer
	AAH21629	(Get FASTA)	NCBI Sequence Viewer
	BAE21194	(Get FASTA)	NCBI Sequence Viewer
	BAE26304	(Get FASTA)	NCBI Sequence Viewer
	CAM24571	(Get FASTA)	NCBI Sequence Viewer
	CAM24572	(Get FASTA)	NCBI Sequence Viewer
	EDL27694	(Get FASTA)	NCBI Sequence Viewer
	EDL27695	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000028609
	ENSMUSP00000028609.8
	ENSMUSP00000118565.2
	ENSMUSP00000126941
	ENSMUSP00000126941.2
	ENSMUSP00000159212.2
GenBank Protein	Q8VDK3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_034255 ⟸ NM_010125

- UniProtKB:

Q921H5 (UniProtKB/Swiss-Prot), Q9Z2K6 (UniProtKB/Swiss-Prot), Q8VDK3 (UniProtKB/Swiss-Prot), Q3ULZ4 (UniProtKB/TrEMBL), Q3V1F7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLDSVTHSTFLPNASFCDPLMPWTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQ
FCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGYSFFNDAEE
TKTGIKDYADSSCLKTSGIKSQDCHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFR
VVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEKL

hide sequence

RefSeq Acc Id:

NP_001139285 ⟸ NM_001145813

- UniProtKB:

Q921H5 (UniProtKB/Swiss-Prot), Q9Z2K6 (UniProtKB/Swiss-Prot), Q8VDK3 (UniProtKB/Swiss-Prot), Q3V1F7 (UniProtKB/TrEMBL), Q3ULZ4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLDSVTHSTFLPNASFCDPLMPWTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQ
FCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGYSFFNDAEE
TKTGIKDYADSSCLKTSGIKSQDCHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFR
VVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEKL

hide sequence

RefSeq Acc Id:	XP_006498768 ⟸ XM_006498705
- Peptide Label:	isoform X1
- UniProtKB:	Q921H5 (UniProtKB/Swiss-Prot), Q9Z2K6 (UniProtKB/Swiss-Prot), Q8VDK3 (UniProtKB/Swiss-Prot), Q3V1F7 (UniProtKB/TrEMBL), Q3ULZ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLDSVTHSTFLPNASFCDPLMPWTDLFSNEDYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQ FCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGICGEYLYFILQNIRSQGYSFFNDAEE TKTGIKDYADSSCLKTSGIKSQDCHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFR VVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVDRRLVYKFGKNAHGWQEEKL hide sequence

RefSeq Acc Id:

ENSMUSP00000126941 ⟸ ENSMUST00000164172

RefSeq Acc Id:

ENSMUSP00000159212 ⟸ ENSMUST00000239273

RefSeq Acc Id:

ENSMUSP00000028609 ⟸ ENSMUST00000028609

RefSeq Acc Id:

ENSMUSP00000131940 ⟸ ENSMUST00000171693

RefSeq Acc Id:

ENSMUSP00000118565 ⟸ ENSMUST00000126290

Protein Domains

ETS PNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VDK3-F1-model_v2	AlphaFold	Q8VDK3	1-253	view protein structure

Promoters

RGD ID:

6831241

Promoter ID:

MM_KWN:30783

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Spleen

Transcripts:

OTTMUST00000035332

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	103,285,816 - 103,286,316 (+)	MPROMDB

RGD ID:

6831239

Promoter ID:

MM_KWN:30784

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

OTTMUST00000035334

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	103,289,076 - 103,289,576 (+)	MPROMDB

RGD ID:

6878072

Promoter ID:

EPDNEW_M2487

Type:

multiple initiation site

Name:

Elf5_2

Description:

Mus musculus E74-like factor 5 , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2488

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	103,412,098 - 103,412,158	EPDNEW

RGD ID:

6878074

Promoter ID:

EPDNEW_M2488

Type:

initiation region

Name:

Elf5_1

Description:

Mus musculus E74-like factor 5 , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2487

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	103,424,068 - 103,424,128	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1335079	AgrOrtholog
Ensembl Genes	ENSMUSG00000027186	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000028609	ENTREZGENE
	ENSMUST00000028609.14	UniProtKB/Swiss-Prot
	ENSMUST00000126290.2	UniProtKB/TrEMBL
	ENSMUST00000164172	ENTREZGENE
	ENSMUST00000164172.8	UniProtKB/Swiss-Prot
	ENSMUST00000239273.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.10.150.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ets_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ETS_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pointed_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM/pointed_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:13711	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1335079	ENTREZGENE
NCBI Gene	13711	ENTREZGENE
PANTHER	PTHR11849	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11849:SF15	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM_PNT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Elf5	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PNT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	ETS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAM_PNT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF47769	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A668KM45_MOUSE	UniProtKB/TrEMBL
	A2AL22_MOUSE	UniProtKB/TrEMBL
	ELF5_MOUSE	UniProtKB/Swiss-Prot
	Q3ULZ4	ENTREZGENE, UniProtKB/TrEMBL
	Q3V1F7	ENTREZGENE, UniProtKB/TrEMBL
	Q8VDK3	ENTREZGENE
	Q921H5	ENTREZGENE
	Q9Z2K6	ENTREZGENE
UniProt Secondary	A0A0A6YYM3	UniProtKB/TrEMBL
	A0A0K0K1A9	UniProtKB/TrEMBL
	B1AZI9	UniProtKB/TrEMBL
	Q921H5	UniProtKB/Swiss-Prot
	Q9Z2K6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype