Tex261 (testis expressed gene 261) - Rat Genome Database
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Gene: Tex261 (testis expressed gene 261) Mus musculus
Analyze
Symbol: Tex261
Name: testis expressed gene 261
RGD ID: 1314132
MGI Page MGI
Description: Is expressed in testis. Orthologous to human TEX261 (testis expressed 261); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4'-tetrachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3110001O07Rik; AA409339; AI480706; AL033351; TEG-261; testis-expressed protein 261; testis-expressed sequence 261 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,745,863 - 83,752,804 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,745,867 - 83,752,795 (-)Ensembl
GRCm38683,768,881 - 83,776,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,768,885 - 83,775,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,720,408 - 83,725,806 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,736,074 - 83,741,417 (-)NCBImm8
Celera685,753,585 - 85,758,986 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16751776   PMID:17803966   PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Tex261
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,745,863 - 83,752,804 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,745,867 - 83,752,795 (-)Ensembl
GRCm38683,768,881 - 83,776,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,768,885 - 83,775,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,720,408 - 83,725,806 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,736,074 - 83,741,417 (-)NCBImm8
Celera685,753,585 - 85,758,986 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
TEX261
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl270,985,942 - 70,994,873 (-)EnsemblGRCh38hg38GRCh38
GRCh38270,985,942 - 70,994,873 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37271,213,072 - 71,222,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,066,576 - 71,075,509 (-)NCBINCBI36hg18NCBI36
Build 34271,124,724 - 71,133,656NCBI
Celera271,063,750 - 71,072,681 (-)NCBI
Cytogenetic Map2p13.3NCBI
HuRef270,949,521 - 70,958,453 (-)NCBIHuRef
CHM1_1271,142,398 - 71,151,331 (-)NCBICHM1_1
Tex261
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,253,547 - 116,260,730 (-)NCBI
Rnor_6.0 Ensembl4115,448,708 - 115,453,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04115,446,830 - 115,454,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04180,035,954 - 180,042,783 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,963,579 - 117,968,532 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,208,061 - 118,213,013 (-)NCBI
Celera4105,247,874 - 105,252,827 (-)NCBICelera
Cytogenetic Map4q34NCBI
Tex261
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,238,105 - 14,246,222 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,233,322 - 14,246,222 (+)NCBIChiLan1.0ChiLan1.0
TEX261
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,163,645 - 72,172,498 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,163,645 - 72,172,498 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A71,050,226 - 71,060,643 (-)NCBIMhudiblu_PPA_v0panPan3
TEX261
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,294,347 - 69,301,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tex261
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649115,154,543 - 15,163,947 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX261
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1371,540,383 - 71,548,993 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2374,991,479 - 75,000,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX261
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,120,957 - 36,127,754 (+)NCBI
ChlSab1.1 Ensembl1436,121,019 - 36,130,004 (+)Ensembl
Tex261
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247622,417,577 - 2,423,626 (+)NCBI

Position Markers
AI480706  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,770,559 - 83,770,652UniSTSGRCm38
MGSCv37683,720,553 - 83,720,646UniSTSGRCm37
Celera685,753,730 - 85,753,823UniSTS
Cytogenetic Map6C3UniSTS
cM Map635.15UniSTS
Whitehead/MRC_RH6857.74UniSTS
Whitehead/MRC_RH6858.14UniSTS
RH124235  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,768,981 - 83,769,088UniSTSGRCm38
MGSCv37683,718,975 - 83,719,082UniSTSGRCm37
Celera685,752,155 - 85,752,262UniSTS
Cytogenetic Map6C3UniSTS
cM Map635.15UniSTS
RH124846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,768,936 - 83,769,257UniSTSGRCm38
MGSCv37683,718,930 - 83,719,251UniSTSGRCm37
Celera685,752,110 - 85,752,431UniSTS
Cytogenetic Map6C3UniSTS
cM Map635.15UniSTS
UniSTS:224529  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,770,515 - 83,770,695UniSTSGRCm38
MGSCv37683,720,509 - 83,720,689UniSTSGRCm37
Celera685,753,686 - 85,753,868UniSTS
Cytogenetic Map6C3UniSTS
cM Map635.15UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1894
Count of miRNA genes:719
Interacting mature miRNAs:935
Transcripts:ENSMUST00000014892, ENSMUST00000125614, ENSMUST00000137773, ENSMUST00000138192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB526853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY250528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ545377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X80425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X80426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000014892   ⟹   ENSMUSP00000014892
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,768,885 - 83,775,813 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125614
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,770,416 - 83,775,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,771,187 - 83,772,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,773,607 - 83,775,758 (-)Ensembl
RefSeq Acc Id: NM_009357   ⟹   NP_033383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,747,396 - 83,752,794 (-)NCBI
GRCm38683,770,414 - 83,775,812 (-)NCBI
MGSCv37683,720,408 - 83,725,806 (-)RGD
Celera685,753,585 - 85,758,986 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505886   ⟹   XP_006505949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,745,863 - 83,752,804 (-)NCBI
GRCm38683,768,881 - 83,775,793 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505888   ⟹   XP_006505951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,745,863 - 83,752,798 (-)NCBI
GRCm38683,768,881 - 83,776,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255311   ⟹   XP_030111171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,745,863 - 83,752,572 (-)NCBI
GRCm38683,768,881 - 83,775,590 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033383   ⟸   NM_009357
- UniProtKB: Q62302 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505951   ⟸   XM_006505888
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505949   ⟸   XM_006505886
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030111171   ⟸   XM_030255311
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000014892   ⟸   ENSMUST00000014892

Promoters
RGD ID:6840061
Promoter ID:MM_KWN:46631
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059027,   OTTMUST00000059028,   OTTMUST00000059029
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,725,609 - 83,726,109 (-)MPROMDB
RGD ID:6890190
Promoter ID:EPDNEW_M8546
Type:initiation region
Name:Tex261_1
Description:Mus musculus testis expressed gene 261 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,775,776 - 83,775,836EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1096575 AgrOrtholog
Ensembl Genes ENSMUSG00000014748 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000014892 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000014892 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Svp26/Tex261 UniProtKB/Swiss-Prot
KEGG Report mmu:21766 UniProtKB/Swiss-Prot
MGD MGI:1096575 ENTREZGENE
NCBI Gene 21766 ENTREZGENE
PANTHER PTHR13144 UniProtKB/Swiss-Prot
Pfam Erv26 UniProtKB/Swiss-Prot
PhenoGen Tex261 PhenoGen
UniProt Q62301_MOUSE UniProtKB/TrEMBL
  Q62302 ENTREZGENE, UniProtKB/Swiss-Prot