Rin3 (Ras and Rab interactor 3) - Rat Genome Database

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Gene: Rin3 (Ras and Rab interactor 3) Mus musculus
Analyze
Symbol: Rin3
Name: Ras and Rab interactor 3
RGD ID: 1314129
MGI Page MGI
Description: Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in signal transduction and vesicle-mediated transport. Predicted to act upstream of or within negative regulation of receptor internalization and regulation of vesicle size. Located in axon; dendrite; and neuronal cell body. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system; and integumental system. Orthologous to human RIN3 (Ras and Rab interactor 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430500K07; C86933; Ras interaction/interference protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912102,248,572 - 102,358,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12102,249,307 - 102,357,114 (+)EnsemblGRCm39 Ensembl
GRCm3812102,282,840 - 102,390,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12102,283,048 - 102,390,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712103,521,284 - 103,629,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612102,684,124 - 102,791,901 (+)NCBIMGSCv36mm8
Celera12103,500,655 - 103,608,535 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon  (IDA)
cytoplasm  (ISO)
cytoplasmic vesicle  (ISO,ISS)
cytosol  (IBA)
dendrite  (IDA)
early endosome  (ISO,ISS)
endocytic vesicle  (IBA,IEA,ISO)
neuronal cell body  (IDA)
vesicle  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24194600  
PMID:32325033   PMID:32552912   PMID:38355793  


Genomics

Comparative Map Data
Rin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912102,248,572 - 102,358,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12102,249,307 - 102,357,114 (+)EnsemblGRCm39 Ensembl
GRCm3812102,282,840 - 102,390,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12102,283,048 - 102,390,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712103,521,284 - 103,629,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612102,684,124 - 102,791,901 (+)NCBIMGSCv36mm8
Celera12103,500,655 - 103,608,535 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1251.45NCBI
RIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381492,513,781 - 92,688,994 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1492,513,781 - 92,688,994 (+)EnsemblGRCh38hg38GRCh38
GRCh371492,980,125 - 93,155,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361492,049,878 - 92,225,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 341492,049,877 - 92,225,085NCBI
Celera1473,032,207 - 73,209,490 (+)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1473,162,292 - 73,338,395 (+)NCBIHuRef
CHM1_11492,918,607 - 93,093,630 (+)NCBICHM1_1
T2T-CHM13v2.01486,743,365 - 86,920,782 (+)NCBIT2T-CHM13v2.0
Rin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86127,196,648 - 127,305,821 (+)NCBIGRCr8
mRatBN7.26121,431,776 - 121,540,956 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6121,431,339 - 121,540,957 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6121,572,522 - 121,681,365 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06121,867,781 - 121,976,628 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06121,203,791 - 121,312,012 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06126,170,672 - 126,279,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6126,170,720 - 126,279,682 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06135,381,785 - 135,490,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46126,555,387 - 126,665,098 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16126,556,517 - 126,668,118 (+)NCBI
Celera6118,920,459 - 119,029,000 (+)NCBICelera
Cytogenetic Map6q32NCBI
Rin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543814,778,262 - 14,898,747 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543814,777,866 - 14,898,572 (+)NCBIChiLan1.0ChiLan1.0
RIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21593,671,490 - 93,846,419 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11492,888,001 - 93,067,922 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01473,148,000 - 73,322,798 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11492,488,770 - 92,662,415 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1492,488,770 - 92,662,415 (+)Ensemblpanpan1.1panPan2
RIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.181,733,051 - 1,804,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl81,700,161 - 1,803,950 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha81,725,009 - 1,829,175 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.081,755,334 - 1,859,544 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl81,787,515 - 1,859,111 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.181,693,043 - 1,797,175 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.081,660,348 - 1,747,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.081,770,397 - 1,874,571 (+)NCBIUU_Cfam_GSD_1.0
Rin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864012,701,138 - 12,783,751 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936733683,272 - 765,906 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936733683,309 - 765,897 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7114,035,353 - 114,166,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17114,035,137 - 114,166,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27120,641,419 - 120,771,254 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12470,261,693 - 70,447,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2470,303,459 - 70,450,059 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605357,511,541 - 57,695,118 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247349,080,152 - 9,199,412 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247349,080,109 - 9,197,536 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rin3
3931 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1776
Count of miRNA genes:685
Interacting mature miRNAs:856
Transcripts:ENSMUST00000056950, ENSMUST00000101114, ENSMUST00000131076, ENSMUST00000133820, ENSMUST00000137249, ENSMUST00000139686, ENSMUST00000150795
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
4141586Ssrq6_mstress response QTL 6 (mouse)Not determined100532075102461265Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse

Markers in Region
C86933  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812102,383,113 - 102,383,335UniSTSGRCm38
MGSCv3712103,621,323 - 103,621,545UniSTSGRCm37
Celera12103,600,798 - 103,601,020UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12943.08UniSTS
RH127086  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812102,366,880 - 102,367,080UniSTSGRCm38
MGSCv3712103,605,090 - 103,605,290UniSTSGRCm37
Celera12103,584,443 - 103,584,643UniSTS
Cytogenetic Map12EUniSTS
Whitehead/MRC_RH12944.23UniSTS
D12Mit180  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812102,298,104 - 102,298,236UniSTSGRCm38
MGSCv3712103,536,314 - 103,536,446UniSTSGRCm37
Celera12103,515,667 - 103,515,799UniSTS
Cytogenetic Map12EUniSTS
cM Map1250.0UniSTS
Whitehead Genetic1244.8UniSTS
Whitehead_YAC12 UniSTS
UniSTS:236926  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812102,390,116 - 102,390,332UniSTSGRCm38
MGSCv3712103,628,326 - 103,628,542UniSTSGRCm37
Celera12103,607,796 - 103,608,012UniSTS
Cytogenetic Map12EUniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY265356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000056950   ⟹   ENSMUSP00000060771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,249,307 - 102,357,114 (+)Ensembl
GRCm38.p6 Ensembl12102,283,048 - 102,390,855 (+)Ensembl
Ensembl Acc Id: ENSMUST00000101114   ⟹   ENSMUSP00000098673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,249,426 - 102,329,327 (+)Ensembl
GRCm38.p6 Ensembl12102,283,167 - 102,363,068 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,321,004 - 102,334,832 (+)Ensembl
GRCm38.p6 Ensembl12102,354,745 - 102,368,573 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133820   ⟹   ENSMUSP00000122646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,249,900 - 102,357,114 (+)Ensembl
GRCm38.p6 Ensembl12102,283,641 - 102,390,855 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,321,004 - 102,327,766 (+)Ensembl
GRCm38.p6 Ensembl12102,354,745 - 102,361,507 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,321,039 - 102,325,491 (+)Ensembl
GRCm38.p6 Ensembl12102,354,780 - 102,359,232 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150795   ⟹   ENSMUSP00000123268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,249,427 - 102,293,044 (+)Ensembl
GRCm38.p6 Ensembl12102,283,168 - 102,326,785 (+)Ensembl
RefSeq Acc Id: NM_001161365   ⟹   NP_001154837
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,249,900 - 102,357,113 (+)NCBI
GRCm3812102,283,641 - 102,390,854 (+)NCBI
MGSCv3712103,521,284 - 103,629,064 (+)RGD
Celera12103,500,655 - 103,608,535 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177620   ⟹   NP_808288
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,249,333 - 102,357,113 (+)NCBI
GRCm3812102,283,074 - 102,390,854 (+)NCBI
MGSCv3712103,521,284 - 103,629,064 (+)RGD
Celera12103,500,655 - 103,608,535 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030246670   ⟹   XP_030102530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,248,572 - 102,358,982 (+)NCBI
GRCm3812102,282,847 - 102,390,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246671   ⟹   XP_030102531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,321,009 - 102,358,982 (+)NCBI
GRCm3812102,354,750 - 102,390,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157343   ⟹   XP_036013236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,248,572 - 102,353,901 (+)NCBI
Sequence:
RefSeq Acc Id: NP_808288   ⟸   NM_177620
- Peptide Label: isoform 1
- UniProtKB: B2RQF8 (UniProtKB/Swiss-Prot),   P59729 (UniProtKB/Swiss-Prot),   Q3U3Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001154837   ⟸   NM_001161365
- Peptide Label: isoform 2
- UniProtKB: Q3U332 (UniProtKB/TrEMBL),   Q3U3Y6 (UniProtKB/TrEMBL),   Q80WA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030102530   ⟸   XM_030246670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102531   ⟸   XM_030246671
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000123268   ⟸   ENSMUST00000150795
Ensembl Acc Id: ENSMUSP00000060771   ⟸   ENSMUST00000056950
Ensembl Acc Id: ENSMUSP00000098673   ⟸   ENSMUST00000101114
Ensembl Acc Id: ENSMUSP00000122646   ⟸   ENSMUST00000133820
RefSeq Acc Id: XP_036013236   ⟸   XM_036157343
- Peptide Label: isoform X1
Protein Domains
Ras-associating   SH2   VPS9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59729-F1-model_v2 AlphaFold P59729 1-980 view protein structure

Promoters
RGD ID:8679038
Promoter ID:EPDNEW_M17550
Type:initiation region
Name:Rin3_1
Description:Mus musculus Ras and Rab interactor 3 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812102,283,167 - 102,283,227EPDNEW
RGD ID:6823324
Promoter ID:MM_KWN:12527
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:OTTMUST00000055827,   OTTMUST00000055828,   OTTMUST00000055830,   UC007OUB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612103,520,631 - 103,521,527 (+)MPROMDB
RGD ID:6823325
Promoter ID:MM_KWN:12529
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000055831,   OTTMUST00000055832,   OTTMUST00000055896
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612103,591,971 - 103,592,922 (+)MPROMDB
RGD ID:6847007
Promoter ID:MM_ACW:11814
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   Spleen
Transcripts:RIN3.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612103,606,314 - 103,606,814 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385708 AgrOrtholog
Ensembl Genes ENSMUSG00000044456 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000056950 ENTREZGENE
  ENSMUST00000056950.14 UniProtKB/Swiss-Prot
  ENSMUST00000101114.11 UniProtKB/TrEMBL
  ENSMUST00000133820 ENTREZGENE
  ENSMUST00000133820.2 UniProtKB/TrEMBL
  ENSMUST00000150795.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIN3_SH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps9-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217835 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2385708 ENTREZGENE
NCBI Gene 217835 ENTREZGENE
PANTHER PTHR23101 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS AND RAB INTERACTOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rin3 PhenoGen
PROSITE PS50200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VPS9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109993 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55550 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RQF8 ENTREZGENE
  D3Z076_MOUSE UniProtKB/TrEMBL
  P59729 ENTREZGENE
  Q3TM19_MOUSE UniProtKB/TrEMBL
  Q3U332 ENTREZGENE, UniProtKB/TrEMBL
  Q3U3Y6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UZ87_MOUSE UniProtKB/TrEMBL
  Q6PDX1_MOUSE UniProtKB/TrEMBL
  Q80WA0 ENTREZGENE, UniProtKB/TrEMBL
  RIN3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RQF8 UniProtKB/Swiss-Prot