Arpc2 (actin related protein 2/3 complex, subunit 2) - Rat Genome Database

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Gene: Arpc2 (actin related protein 2/3 complex, subunit 2) Mus musculus
Analyze
Symbol: Arpc2
Name: actin related protein 2/3 complex, subunit 2
RGD ID: 1314127
MGI Page MGI
Description: Predicted to enable ATPase binding activity; actin filament binding activity; and glutamate receptor binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within positive regulation of actin filament polymerization and positive regulation of substrate adhesion-dependent cell spreading. Located in several cellular components, including endosome; focal adhesion; and muscle cell projection membrane. Is active in glutamatergic synapse. Is expressed in lens and lens pit. Orthologous to human ARPC2 (actin related protein 2/3 complex subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210023N03Rik; 34kDa; actin-related protein 2/3 complex subunit 2; arp2/3 complex 34 kDa subunit; MGC141099; p34-; p34-Arc
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm5492  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,275,656 - 74,307,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,275,243 - 74,307,368 (+)EnsemblGRCm39 Ensembl
GRCm38174,236,490 - 74,268,209 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,236,084 - 74,268,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,283,124 - 74,314,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,169,706 - 74,201,416 (+)NCBIMGSCv36mm8
Celera174,797,918 - 74,829,569 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Arp2/3- and cofilin-coordinated actin dynamics is required for insulin-mediated GLUT4 translocation to the surface of muscle cells. Chiu TT, etal., Mol Biol Cell. 2010 Oct 15;21(20):3529-39. doi: 10.1091/mbc.E10-04-0316. Epub 2010 Aug 25.
2. Specific proteins identified in whole saliva from patients with diffuse systemic sclerosis. Giusti L, etal., J Rheumatol. 2007 Oct;34(10):2063-9. Epub 2007 Aug 15.
3. Identification of differentially expressed genes in rat silicosis model by suppression subtractive hybridization analysis. Jin Z, etal., Acta Biochim Biophys Sin (Shanghai). 2008 Aug;40(8):740-6.
4. A multi-marker assay to distinguish malignant melanomas from benign nevi. Kashani-Sabet M, etal., Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6268-72. doi: 10.1073/pnas.0901185106. Epub 2009 Mar 30.
5. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
6. Proteomic analysis of breast cancer tissue reveals upregulation of actin-remodeling proteins and its relevance to cancer invasiveness. Kim DH, etal., Proteomics Clin Appl. 2009 Jan;3(1):30-40. doi: 10.1002/prca.200800167. Epub 2008 Nov 20.
7. Pair-wise comparison analysis of differential expression of mRNAs in early and advanced stage primary colorectal adenocarcinomas. Lau TP, etal., BMJ Open. 2014 Aug 8;4(8):e004930. doi: 10.1136/bmjopen-2014-004930.
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12473693   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15572692  
PMID:15782199   PMID:16084593   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18289379   PMID:18799693   PMID:18836449   PMID:20308062   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22021442   PMID:22492726   PMID:22553210   PMID:22689987   PMID:24413018   PMID:24457600   PMID:24721909   PMID:25543281   PMID:25737280   PMID:26398943   PMID:27385014   PMID:28671696  
PMID:28827576   PMID:28867487   PMID:29518331   PMID:30333137   PMID:30409884   PMID:30457570   PMID:30562941   PMID:31162944   PMID:32325033   PMID:32554809   PMID:32581705  


Genomics

Comparative Map Data
Arpc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,275,656 - 74,307,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,275,243 - 74,307,368 (+)EnsemblGRCm39 Ensembl
GRCm38174,236,490 - 74,268,209 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,236,084 - 74,268,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,283,124 - 74,314,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,169,706 - 74,201,416 (+)NCBIMGSCv36mm8
Celera174,797,918 - 74,829,569 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.49NCBI
ARPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,217,189 - 218,254,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2218,217,141 - 218,254,356 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,081,912 - 219,119,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,790,119 - 218,827,316 (+)NCBINCBI36Build 36hg18NCBI36
Build 342218,907,379 - 218,944,576NCBI
Celera2212,848,449 - 212,885,654 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2210,934,975 - 210,972,151 (+)NCBIHuRef
CHM1_12219,088,288 - 219,125,558 (+)NCBICHM1_1
T2T-CHM13v2.02218,702,891 - 218,740,055 (+)NCBIT2T-CHM13v2.0
Arpc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2975,820,782 - 75,851,471 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,820,770 - 75,851,471 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,271,669 - 84,296,962 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0989,400,588 - 89,425,881 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0987,786,805 - 87,812,098 (+)NCBIRnor_WKY
Rnor_6.0981,518,163 - 81,548,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,518,176 - 81,548,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,285,084 - 81,315,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,563,617 - 73,594,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,710,470 - 73,741,240 (+)NCBI
Celera973,397,334 - 73,427,983 (+)NCBICelera
Cytogenetic Map9q33NCBI
Arpc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,116,093 - 15,146,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,117,978 - 15,145,895 (-)NCBIChiLan1.0ChiLan1.0
ARPC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B224,076,356 - 224,111,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,076,356 - 224,111,643 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B105,478,035 - 105,513,665 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ARPC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,914,389 - 24,935,998 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,914,642 - 24,935,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,726,741 - 25,756,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03724,922,615 - 24,952,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3724,922,535 - 24,952,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,827,991 - 24,857,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,762,177 - 24,791,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,781,773 - 24,811,231 (+)NCBIUU_Cfam_GSD_1.0
Arpc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,415,593 - 174,443,979 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936569758,358 - 786,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,297,025 - 120,328,542 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,297,122 - 120,328,795 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,376,755 - 133,421,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,098,275 - 104,144,043 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,098,402 - 104,135,791 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604095,260,455 - 95,302,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,774,855 - 6,804,219 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
RH139221  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,236,921 - 74,237,095UniSTSGRCm38
MGSCv37174,283,495 - 74,283,669UniSTSGRCm37
Celera174,798,289 - 74,798,463UniSTS
Cytogenetic Map1C3UniSTS
cM Map140.3UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:261
Count of miRNA genes:119
Interacting mature miRNAs:125
Transcripts:ENSMUST00000006467, ENSMUST00000113819, ENSMUST00000113820
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV115645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF016986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF462332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY247669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY440113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000006467   ⟹   ENSMUSP00000006467
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,275,676 - 74,307,146 (+)Ensembl
GRCm38.p6 Ensembl174,236,517 - 74,267,987 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113819   ⟹   ENSMUSP00000109450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,275,709 - 74,307,147 (+)Ensembl
GRCm38.p6 Ensembl174,236,550 - 74,267,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113820   ⟹   ENSMUSP00000109451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,275,656 - 74,307,368 (+)Ensembl
GRCm38.p6 Ensembl174,236,497 - 74,268,209 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185733   ⟹   ENSMUSP00000140762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,275,243 - 74,276,047 (+)Ensembl
GRCm38.p6 Ensembl174,236,084 - 74,236,888 (+)Ensembl
RefSeq Acc Id: NM_001357387   ⟹   NP_001344316
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,275,676 - 74,307,368 (+)NCBI
GRCm38174,236,517 - 74,268,209 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029711   ⟹   NP_083987
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,275,676 - 74,307,368 (+)NCBI
GRCm38174,236,517 - 74,268,209 (+)NCBI
MGSCv37174,283,124 - 74,314,787 (+)RGD
Celera174,797,918 - 74,829,569 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030243491   ⟹   XP_030099351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,275,656 - 74,307,368 (+)NCBI
GRCm38174,236,490 - 74,268,209 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_083987   ⟸   NM_029711
- UniProtKB: Q3U870 (UniProtKB/Swiss-Prot),   Q9CVB6 (UniProtKB/Swiss-Prot),   A0A6P5P892 (UniProtKB/TrEMBL),   A0A8C6MZ06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099351   ⟸   XM_030243491
- Peptide Label: isoform X1
- UniProtKB: Q3U870 (UniProtKB/Swiss-Prot),   A0A6P5P892 (UniProtKB/TrEMBL),   A0A8C6MZ06 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344316   ⟸   NM_001357387
- UniProtKB: Q3U870 (UniProtKB/Swiss-Prot),   A0A6P5P892 (UniProtKB/TrEMBL),   A0A8C6MZ06 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000006467   ⟸   ENSMUST00000006467
RefSeq Acc Id: ENSMUSP00000109451   ⟸   ENSMUST00000113820
RefSeq Acc Id: ENSMUSP00000109450   ⟸   ENSMUST00000113819
RefSeq Acc Id: ENSMUSP00000140762   ⟸   ENSMUST00000185733

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CVB6-F1-model_v2 AlphaFold Q9CVB6 1-300 view protein structure

Promoters
RGD ID:6874050
Promoter ID:EPDNEW_M476
Type:initiation region
Name:Arpc2_1
Description:Mus musculus actin related protein 2/3 complex, subunit 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,236,544 - 74,236,604EPDNEW
RGD ID:6817378
Promoter ID:MM_KWN:1154
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113819,   OTTMUST00000041972,   UC007BLN.1,   UC007BLP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,282,861 - 74,283,497 (+)MPROMDB
RGD ID:6846579
Promoter ID:MM_ACW:1287
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Spleen
Transcripts:ARPC2.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,308,806 - 74,309,306 (+)MPROMDB
RGD ID:6846580
Promoter ID:MM_ACW:1289
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain
Transcripts:ARPC2.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,313,956 - 74,314,456 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923959 AgrOrtholog
Ensembl Genes ENSMUSG00000006304 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000006467 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109450.2 UniProtKB/TrEMBL
  ENSMUSP00000109451 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140762.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006467 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113819.2 UniProtKB/TrEMBL
  ENSMUST00000113820 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000185733.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARPC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARPC2/4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76709 UniProtKB/Swiss-Prot
MGD MGI:1923959 ENTREZGENE
NCBI Gene 76709 ENTREZGENE
PANTHER PTHR12058 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam P34-Arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arpc2 PhenoGen
Superfamily-SCOP SSF69645 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WRT2_MOUSE UniProtKB/TrEMBL
  A0A6P5P892 ENTREZGENE
  A0A8C6MZ06 ENTREZGENE
  ARPC2_MOUSE UniProtKB/Swiss-Prot
  D3YXG6_MOUSE UniProtKB/TrEMBL
  Q3U870 ENTREZGENE
  Q3UA52_MOUSE UniProtKB/TrEMBL
  Q4FZG5_MOUSE UniProtKB/TrEMBL
  Q9CVB6 ENTREZGENE
UniProt Secondary Q3U870 UniProtKB/Swiss-Prot