ARPC2 (actin related protein 2/3 complex subunit 2) - Rat Genome Database

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Gene: ARPC2 (actin related protein 2/3 complex subunit 2) Homo sapiens
Analyze
Symbol: ARPC2
Name: actin related protein 2/3 complex subunit 2
RGD ID: 1314126
HGNC Page HGNC
Description: A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and positive regulation of lamellipodium assembly. Located in lamellipodium and nucleoplasm. Part of Arp2/3 protein complex. Biomarker of colorectal adenocarcinoma; invasive ductal carcinoma; melanoma; and systemic scleroderma.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: actin related protein 2/3 complex subunit 2, 34kDa; actin related protein 2/3 complex, subunit 2, 34kDa; actin-related protein 2/3 complex subunit 2; ARC34; arp2/3 complex 34 kDa subunit; ARP2/3 protein complex subunit 34; p34-Arc; PNAS-139; PRO2446; testis tissue sperm-binding protein Li 53e
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,217,189 - 218,254,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2218,217,141 - 218,254,356 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,081,912 - 219,119,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,790,119 - 218,827,316 (+)NCBINCBI36hg18NCBI36
Build 342218,907,379 - 218,944,576NCBI
Celera2212,848,449 - 212,885,654 (+)NCBI
Cytogenetic Map2q35NCBI
HuRef2210,934,975 - 210,972,151 (+)NCBIHuRef
CHM1_12219,088,288 - 219,125,558 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8812419   PMID:9359840   PMID:10235267   PMID:11018051   PMID:11162547   PMID:11721045   PMID:11741539   PMID:11882288   PMID:11943145   PMID:12473693   PMID:12477932   PMID:12665801  
PMID:14702039   PMID:15146197   PMID:15279900   PMID:15489334   PMID:15635413   PMID:15793564   PMID:16027158   PMID:16300736   PMID:17350576   PMID:17353931   PMID:18029348   PMID:18560548  
PMID:18708039   PMID:18836448   PMID:19056867   PMID:19490893   PMID:19861958   PMID:20308062   PMID:20458337   PMID:20603326   PMID:20876399   PMID:20974812   PMID:21251247   PMID:21280222  
PMID:21319273   PMID:21423176   PMID:21653829   PMID:21873635   PMID:21975549   PMID:22188208   PMID:22261722   PMID:22863883   PMID:22939629   PMID:23119100   PMID:23128233   PMID:23148219  
PMID:23251661   PMID:23376485   PMID:23383273   PMID:23533145   PMID:23824909   PMID:24132237   PMID:24621569   PMID:24711643   PMID:24981860   PMID:25260753   PMID:25737280   PMID:25921289  
PMID:26186194   PMID:26344197   PMID:26472760   PMID:26496610   PMID:26603838   PMID:26618866   PMID:26673895   PMID:27342126   PMID:27523502   PMID:27609421   PMID:27684187   PMID:27872092  
PMID:27926873   PMID:28514442   PMID:28694563   PMID:28718761   PMID:28775156   PMID:28827576   PMID:28902428   PMID:29509190   PMID:29568061   PMID:29955894   PMID:30425250   PMID:30575818  
PMID:30699358   PMID:30720048   PMID:30833792   PMID:30948266   PMID:31002363   PMID:31180492   PMID:31387452   PMID:31470122   PMID:31586073   PMID:31871319   PMID:31980649   PMID:32176628  
PMID:32176739   PMID:32470361   PMID:32513696   PMID:32780723   PMID:32807901   PMID:32911434   PMID:33144569   PMID:33194618   PMID:33226137   PMID:33403043   PMID:33644029   PMID:33762435  
PMID:33947818   PMID:33961781   PMID:34373451   PMID:34709727   PMID:35271311  


Genomics

Comparative Map Data
ARPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,217,189 - 218,254,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2218,217,141 - 218,254,356 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,081,912 - 219,119,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,790,119 - 218,827,316 (+)NCBINCBI36hg18NCBI36
Build 342218,907,379 - 218,944,576NCBI
Celera2212,848,449 - 212,885,654 (+)NCBI
Cytogenetic Map2q35NCBI
HuRef2210,934,975 - 210,972,151 (+)NCBIHuRef
CHM1_12219,088,288 - 219,125,558 (+)NCBICHM1_1
Arpc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,275,656 - 74,307,368 (+)NCBIGRCm39mm39
GRCm39 Ensembl174,275,243 - 74,307,368 (+)Ensembl
GRCm38174,236,490 - 74,268,209 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,236,084 - 74,268,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,283,124 - 74,314,787 (+)NCBIGRCm37mm9NCBIm37
MGSCv36174,169,706 - 74,201,416 (+)NCBImm8
Celera174,797,918 - 74,829,569 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.49NCBI
Arpc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2975,820,782 - 75,851,471 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl975,820,770 - 75,851,471 (+)Ensembl
Rnor_6.0981,518,163 - 81,548,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,518,176 - 81,548,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,285,084 - 81,315,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,563,617 - 73,594,263 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1973,710,470 - 73,741,240 (+)NCBI
Celera973,397,334 - 73,427,983 (+)NCBICelera
Cytogenetic Map9q33NCBI
Arpc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,116,093 - 15,146,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,117,978 - 15,145,895 (-)NCBIChiLan1.0ChiLan1.0
ARPC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B224,076,356 - 224,111,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,076,356 - 224,111,643 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B105,478,035 - 105,513,665 (+)NCBIMhudiblu_PPA_v0panPan3
ARPC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,914,389 - 24,935,998 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,914,642 - 24,935,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,726,741 - 25,756,145 (+)NCBI
ROS_Cfam_1.03724,922,615 - 24,952,042 (+)NCBI
ROS_Cfam_1.0 Ensembl3724,922,535 - 24,952,248 (+)Ensembl
UMICH_Zoey_3.13724,827,991 - 24,857,388 (+)NCBI
UNSW_CanFamBas_1.03724,762,177 - 24,791,643 (+)NCBI
UU_Cfam_GSD_1.03724,781,773 - 24,811,231 (+)NCBI
Arpc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,415,593 - 174,443,979 (+)NCBI
SpeTri2.0NW_004936569758,358 - 786,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,297,127 - 120,329,059 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,297,122 - 120,328,795 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,376,755 - 133,421,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,098,275 - 104,144,043 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,098,402 - 104,135,791 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604095,260,455 - 95,302,739 (-)NCBIVero_WHO_p1.0
Arpc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,774,855 - 6,804,219 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
G16343  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,111,981 - 219,112,144UniSTSGRCh37
Build 362218,820,226 - 218,820,389RGDNCBI36
Celera2212,878,564 - 212,878,727RGD
Cytogenetic Map2q36.1UniSTS
HuRef2210,965,062 - 210,965,225UniSTS
ARPC2_(3)  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,118,876 - 219,118,967UniSTSGRCh37
Build 362218,827,121 - 218,827,212RGDNCBI36
Celera2212,885,459 - 212,885,550RGD
HuRef2210,971,956 - 210,972,047UniSTS
STS-U50523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,118,664 - 219,118,906UniSTSGRCh37
Build 362218,826,909 - 218,827,151RGDNCBI36
Celera2212,885,247 - 212,885,489RGD
Cytogenetic Map2q36.1UniSTS
HuRef2210,971,744 - 210,971,986UniSTS
NCBI RH Map21717.1UniSTS
D2S2896  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372219,118,919 - 219,119,055UniSTSGRCh37
Build 362218,827,164 - 218,827,300RGDNCBI36
Celera2212,885,502 - 212,885,638RGD
Cytogenetic Map2q36.1UniSTS
HuRef2210,971,999 - 210,972,135UniSTS
GDB:434012  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q31.2-q33.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p21.3-p13.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map14q31UniSTS
D11S2560  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6p24UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map9q31.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map14q32.32UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q11UniSTS
RH80030  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic MapXq26.1UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map12q15-q21UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2p22.2UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map11q22.2-q22.3UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map10q26.13-q26.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map2q32.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2525
Count of miRNA genes:927
Interacting mature miRNAs:1124
Transcripts:ENST00000295685, ENST00000315717, ENST00000414983, ENST00000420104, ENST00000420201, ENST00000456575, ENST00000462034, ENST00000465395, ENST00000470146, ENST00000471355, ENST00000472753, ENST00000477992, ENST00000478612, ENST00000480062, ENST00000484961, ENST00000487321, ENST00000489598, ENST00000491780
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2439 2973 1713 612 1951 453 4357 2180 3722 417 1459 1612 175 1 1204 2788 6 2
Low 18 13 12 12 17 12 2 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_005731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017003113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017003114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017003115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024452509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047442808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC021016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC097483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF006085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF279893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG282181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG765898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN291458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000295685   ⟹   ENSP00000295685
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,210 - 218,254,356 (+)Ensembl
RefSeq Acc Id: ENST00000315717   ⟹   ENSP00000327137
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,189 - 218,254,348 (+)Ensembl
RefSeq Acc Id: ENST00000414983   ⟹   ENSP00000412632
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,202 - 218,239,485 (+)Ensembl
RefSeq Acc Id: ENST00000420104   ⟹   ENSP00000401070
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,141 - 218,234,398 (+)Ensembl
RefSeq Acc Id: ENST00000420201   ⟹   ENSP00000396475
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,181 - 218,238,849 (+)Ensembl
RefSeq Acc Id: ENST00000456575   ⟹   ENSP00000411612
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,245,426 - 218,254,123 (+)Ensembl
RefSeq Acc Id: ENST00000462034
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,238,719 - 218,239,562 (+)Ensembl
RefSeq Acc Id: ENST00000465395
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,455 - 218,239,195 (+)Ensembl
RefSeq Acc Id: ENST00000470146
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,233,000 - 218,254,108 (+)Ensembl
RefSeq Acc Id: ENST00000471355
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,225,919 - 218,229,303 (+)Ensembl
RefSeq Acc Id: ENST00000472753
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,225,919 - 218,239,017 (+)Ensembl
RefSeq Acc Id: ENST00000477992
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,235,341 - 218,254,108 (+)Ensembl
RefSeq Acc Id: ENST00000478612
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,194 - 218,245,457 (+)Ensembl
RefSeq Acc Id: ENST00000480062
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,197 - 218,238,723 (+)Ensembl
RefSeq Acc Id: ENST00000484961
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,228,803 - 218,238,730 (+)Ensembl
RefSeq Acc Id: ENST00000487321
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,249,592 - 218,254,110 (+)Ensembl
RefSeq Acc Id: ENST00000489598
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,147 - 218,235,052 (+)Ensembl
RefSeq Acc Id: ENST00000491780
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2218,217,149 - 218,235,390 (+)Ensembl
RefSeq Acc Id: NM_005731   ⟹   NP_005722
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,217,397 - 218,254,348 (+)NCBI
GRCh372219,081,817 - 219,119,071 (+)NCBI
Build 362218,790,365 - 218,827,316 (+)NCBI Archive
HuRef2210,934,975 - 210,972,151 (+)NCBI
CHM1_12219,088,591 - 219,125,558 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152862   ⟹   NP_690601
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,217,189 - 218,254,348 (+)NCBI
GRCh372219,081,817 - 219,119,071 (+)NCBI
Build 362218,790,119 - 218,827,316 (+)NCBI Archive
HuRef2210,934,975 - 210,972,151 (+)NCBI
CHM1_12219,088,288 - 219,125,558 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017003113   ⟹   XP_016858602
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,217,189 - 218,254,348 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047442808   ⟹   XP_047298764
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,228,812 - 218,254,348 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_690601   ⟸   NM_152862
- UniProtKB: O15144 (UniProtKB/Swiss-Prot),   Q53R19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_005722   ⟸   NM_005731
- UniProtKB: O15144 (UniProtKB/Swiss-Prot),   Q53R19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016858602   ⟸   XM_017003113
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000295685   ⟸   ENST00000295685
RefSeq Acc Id: ENSP00000412632   ⟸   ENST00000414983
RefSeq Acc Id: ENSP00000411612   ⟸   ENST00000456575
RefSeq Acc Id: ENSP00000327137   ⟸   ENST00000315717
RefSeq Acc Id: ENSP00000401070   ⟸   ENST00000420104
RefSeq Acc Id: ENSP00000396475   ⟸   ENST00000420201
RefSeq Acc Id: XP_047298764   ⟸   XM_047442808
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O15144-F1-model_v2 AlphaFold O15144 1-300 view protein structure

Promoters
RGD ID:6862784
Promoter ID:EPDNEW_H4557
Type:initiation region
Name:ARPC2_1
Description:actin related protein 2/3 complex subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4558  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,217,189 - 218,217,249EPDNEW
RGD ID:6862786
Promoter ID:EPDNEW_H4558
Type:initiation region
Name:ARPC2_2
Description:actin related protein 2/3 complex subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4557  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382218,217,339 - 218,217,399EPDNEW
RGD ID:6796808
Promoter ID:HG_KWN:37199
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000295685,   OTTHUMT00000259038,   OTTHUMT00000259041,   OTTHUMT00000259042,   OTTHUMT00000259043,   OTTHUMT00000259046,   OTTHUMT00000259047,   OTTHUMT00000259048,   OTTHUMT00000338813,   OTTHUMT00000338814
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,789,761 - 218,790,261 (+)MPROMDB
RGD ID:6851326
Promoter ID:EP73461
Type:initiation region
Name:HS_ARPC2
Description:Actin related protein 2/3 complex, subunit 2, 34kDa , transcriptvariant 2.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,790,307 - 218,790,367EPD
RGD ID:6796809
Promoter ID:HG_KWN:37200
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000259044,   OTTHUMT00000338815
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,798,041 - 218,798,797 (+)MPROMDB
RGD ID:6796811
Promoter ID:HG_KWN:37201
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000259045
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,801,514 - 218,802,014 (+)MPROMDB
RGD ID:6796810
Promoter ID:HG_KWN:37202
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000259039
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,806,526 - 218,807,026 (+)MPROMDB
RGD ID:6796815
Promoter ID:HG_KWN:37203
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC002VHF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,807,596 - 218,808,797 (+)MPROMDB
RGD ID:6796812
Promoter ID:HG_KWN:37204
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000259049
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,811,036 - 218,812,142 (+)MPROMDB
RGD ID:6796816
Promoter ID:HG_KWN:37205
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000259051
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,817,596 - 218,818,547 (+)MPROMDB
RGD ID:6796813
Promoter ID:HG_KWN:37206
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000259050
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,821,691 - 218,823,042 (+)MPROMDB
RGD ID:6811846
Promoter ID:HG_ACW:47531
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:ARPC2.PAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 362218,826,041 - 218,826,541 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] Chr2:193122313..241074980 [GRCh38]
Chr2:193987039..242014395 [GRCh37]
Chr2:193695284..241663068 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q34-36.3(chr2:212614422-227121230)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052964]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052964]|See cases [RCV000052964] Chr2:212614422..227121230 [GRCh38]
Chr2:213479146..227985946 [GRCh37]
Chr2:213187391..227694190 [NCBI36]
Chr2:2q34-36.3
pathogenic
NM_005731.3(ARPC2):c.323C>T (p.Ser108Phe) single nucleotide variant Malignant melanoma [RCV000065416] Chr2:218238718 [GRCh38]
Chr2:219103441 [GRCh37]
Chr2:218811686 [NCBI36]
Chr2:2q35
not provided
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 copy number gain See cases [RCV000135934] Chr2:210579676..242126245 [GRCh38]
Chr2:211444400..243059659 [GRCh37]
Chr2:211152645..242717069 [NCBI36]
Chr2:2q34-37.3
pathogenic
GRCh38/hg38 2q31.3-36.2(chr2:180513793-224302848)x3 copy number gain See cases [RCV000139446] Chr2:180513793..224302848 [GRCh38]
Chr2:181378520..225167565 [GRCh37]
Chr2:181086765..224875809 [NCBI36]
Chr2:2q31.3-36.2
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 copy number gain See cases [RCV000143216] Chr2:218101759..242126245 [GRCh38]
Chr2:218966482..243059659 [GRCh37]
Chr2:218674727..242717069 [NCBI36]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q35-36.3(chr2:217374144-227643620)x1 copy number loss not provided [RCV000585275] Chr2:217374144..227643620 [GRCh37]
Chr2:2q35-36.3
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q34-37.3(chr2:213518431-242783384)x3 copy number gain See cases [RCV000512009] Chr2:213518431..242783384 [GRCh37]
Chr2:2q34-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q35-36.3(chr2:218813434-227450699)x1 copy number loss not provided [RCV000682163] Chr2:218813434..227450699 [GRCh37]
Chr2:2q35-36.3
pathogenic
GRCh37/hg19 2q33.3-35(chr2:205169148-219149293)x3 copy number gain not provided [RCV000682166] Chr2:205169148..219149293 [GRCh37]
Chr2:2q33.3-35
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
Single allele duplication Neurodevelopmental disorder [RCV000787403] Chr2:188926928..225298653 [GRCh37]
Chr2:2q32.1-36.2
pathogenic
GRCh37/hg19 2q34-37.3(chr2:210779657-239879183)x3 copy number gain See cases [RCV000790568] Chr2:210779657..239879183 [GRCh37]
Chr2:2q34-37.3
pathogenic
GRCh37/hg19 2q35(chr2:218271898-219825640) copy number gain not provided [RCV000767784] Chr2:218271898..219825640 [GRCh37]
Chr2:2q35
likely pathogenic
NM_152862.3(ARPC2):c.7C>T (p.Leu3=) single nucleotide variant not provided [RCV000962957] Chr2:218217477 [GRCh38]
Chr2:219082200 [GRCh37]
Chr2:2q35
benign
NM_152862.3(ARPC2):c.677-3C>T single nucleotide variant not provided [RCV000974049] Chr2:218249361 [GRCh38]
Chr2:219114084 [GRCh37]
Chr2:2q35
benign
GRCh37/hg19 2q35(chr2:216883237-220953003)x3 copy number gain not provided [RCV001007510] Chr2:216883237..220953003 [GRCh37]
Chr2:2q35
pathogenic
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 copy number gain See cases [RCV001263052] Chr2:178397959..243007457 [GRCh37]
Chr2:2q31.2-37.3
pathogenic
GRCh37/hg19 2q34-35(chr2:215122019-220397907)x1 copy number loss not provided [RCV001259180] Chr2:215122019..220397907 [GRCh37]
Chr2:2q34-35
likely pathogenic
GRCh37/hg19 2q35(chr2:218210665-220141650) copy number gain not specified [RCV002053284] Chr2:218210665..220141650 [GRCh37]
Chr2:2q35
uncertain significance
GRCh37/hg19 2q34-36.1(chr2:215108009-221679980) copy number gain not specified [RCV002053282] Chr2:215108009..221679980 [GRCh37]
Chr2:2q34-36.1
pathogenic
NC_000002.11:g.(?_218999525)_(220435954_?)dup duplication Alacrima, achalasia, and intellectual disability syndrome [RCV001955103]|Cernunnos-XLF deficiency [RCV001955101]|Cholestanol storage disease [RCV001955102]|Paroxysmal nonkinesigenic dyskinesia [RCV001962531] Chr2:218999525..220435954 [GRCh37]
Chr2:2q35
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:705 AgrOrtholog
COSMIC ARPC2 COSMIC
Ensembl Genes ENSG00000163466 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000295685 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000327137 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000396475 UniProtKB/TrEMBL
  ENSP00000401070 UniProtKB/TrEMBL
  ENSP00000411612 UniProtKB/TrEMBL
  ENSP00000412632 UniProtKB/TrEMBL
Ensembl Transcript ENST00000295685 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000315717 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000414983 UniProtKB/TrEMBL
  ENST00000420104 UniProtKB/TrEMBL
  ENST00000420201 UniProtKB/TrEMBL
  ENST00000456575 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000163466 GTEx
HGNC ID HGNC:705 ENTREZGENE
Human Proteome Map ARPC2 Human Proteome Map
InterPro ARPC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARPC2/4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 10109 ENTREZGENE
OMIM 604224 OMIM
PANTHER PTHR12058 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam P34-Arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA24999 PharmGKB
Superfamily-SCOP SSF69645 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R408_HUMAN UniProtKB/TrEMBL
  ARPC2_HUMAN UniProtKB/Swiss-Prot
  C9JTV5_HUMAN UniProtKB/TrEMBL
  G5E9J0_HUMAN UniProtKB/TrEMBL
  G5E9S7_HUMAN UniProtKB/TrEMBL
  H7C3F9_HUMAN UniProtKB/TrEMBL
  O15144 ENTREZGENE
  Q53R19 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A024R457 UniProtKB/TrEMBL
  Q92801 UniProtKB/Swiss-Prot
  Q9P1D4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-10 ARPC2  actin related protein 2/3 complex subunit 2    actin related protein 2/3 complex, subunit 2, 34kDa  Symbol and/or name change 5135510 APPROVED
2011-08-17 ARPC2  actin related protein 2/3 complex, subunit 2, 34kDa  ARPC2  actin related protein 2/3 complex, subunit 2, 34kDa  Symbol and/or name change 5135510 APPROVED