Hjurp (Holliday junction recognition protein) - Rat Genome Database

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Gene: Hjurp (Holliday junction recognition protein) Mus musculus
Analyze
Symbol: Hjurp
Name: Holliday junction recognition protein
RGD ID: 1314124
MGI Page MGI
Description: Predicted to enable histone binding activity and identical protein binding activity. Predicted to be involved in CENP-A containing chromatin assembly; chromosome segregation; and regulation of protein-containing complex assembly. Located in chromosome, centromeric region. Is expressed in several structures, including blastocyst; brain; early embryo; extraembryonic component; and neural retina. Orthologous to human HJURP (Holliday junction recognition protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430706D22Rik; A730008H23Rik; C330011F01Rik; fetal liver expressing gene 1 protein homolog; Gm975; Mfleg1; MGC66590
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39188,186,578 - 88,205,366 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl188,190,193 - 88,205,355 (-)EnsemblGRCm39 Ensembl
GRCm38188,258,856 - 88,277,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl188,262,471 - 88,277,633 (-)EnsemblGRCm38mm10GRCm38
MGSCv37190,155,431 - 90,174,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36190,094,280 - 90,108,691 (-)NCBIMGSCv36mm8
Celera191,199,932 - 91,235,490 (-)NCBICelera
Cytogenetic Map1DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
captan  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cerium trichloride  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diallyl trisulfide  (ISO)
diethyl maleate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
folpet  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
hydroquinone  (ISO)
iron dichloride  (ISO)
lucanthone  (ISO)
methamphetamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tributylstannane  (ISO)
triclosan  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:15226823   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:21267068   PMID:21677750   PMID:21858141   PMID:21873635   PMID:22516971   PMID:23404109   PMID:24154525   PMID:24427314   PMID:26142281   PMID:26149421  
PMID:32325033   PMID:32554809   PMID:36114006  


Genomics

Comparative Map Data
Hjurp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39188,186,578 - 88,205,366 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl188,190,193 - 88,205,355 (-)EnsemblGRCm39 Ensembl
GRCm38188,258,856 - 88,277,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl188,262,471 - 88,277,633 (-)EnsemblGRCm38mm10GRCm38
MGSCv37190,155,431 - 90,174,154 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36190,094,280 - 90,108,691 (-)NCBIMGSCv36mm8
Celera191,199,932 - 91,235,490 (-)NCBICelera
Cytogenetic Map1DNCBI
HJURP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382233,836,702 - 233,854,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2233,833,416 - 233,854,566 (-)EnsemblGRCh38hg38GRCh38
GRCh372234,745,348 - 234,763,181 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,410,225 - 234,427,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera2228,465,901 - 228,483,632 (-)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2226,545,052 - 226,562,783 (-)NCBIHuRef
CHM1_12234,751,267 - 234,768,999 (-)NCBICHM1_1
T2T-CHM13v2.02234,325,468 - 234,351,509 (-)NCBIT2T-CHM13v2.0
Hjurp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8996,301,183 - 96,315,587 (-)NCBIGRCr8
mRatBN7.2988,853,379 - 88,867,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,853,386 - 88,867,728 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx997,279,201 - 97,292,265 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09102,415,391 - 102,428,455 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,782,921 - 100,795,849 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0995,347,739 - 95,362,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl995,349,086 - 95,362,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0995,034,954 - 95,049,363 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4987,144,626 - 87,157,554 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1987,329,519 - 87,344,374 (-)NCBI
Celera986,415,664 - 86,428,497 (-)NCBICelera
Cytogenetic Map9q35NCBI
Hjurp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554532,322,446 - 2,334,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554532,323,018 - 2,335,090 (+)NCBIChiLan1.0ChiLan1.0
HJURP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213136,473,137 - 136,493,651 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B136,488,102 - 136,508,616 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B121,076,314 - 121,096,783 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B239,947,501 - 239,967,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B239,950,984 - 239,967,955 (-)Ensemblpanpan1.1panPan2
HJURP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12545,215,165 - 45,230,603 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2545,215,380 - 45,230,547 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2545,712,175 - 45,728,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02545,562,016 - 45,578,385 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2545,562,025 - 45,578,349 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12545,454,850 - 45,471,197 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02545,263,245 - 45,279,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02545,491,645 - 45,507,982 (-)NCBIUU_Cfam_GSD_1.0
Hjurp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303187,395,627 - 187,411,374 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365253,528,379 - 3,544,088 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HJURP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15134,106,578 - 134,123,140 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115134,106,561 - 134,123,163 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215148,541,200 - 148,557,802 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HJURP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110119,857,118 - 119,885,945 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10119,868,303 - 119,885,783 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604079,596,885 - 79,623,565 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hjurp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624847166,511 - 179,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hjurp
460 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2447
Count of miRNA genes:806
Interacting mature miRNAs:1048
Transcripts:ENSMUST00000054674, ENSMUST00000065420, ENSMUST00000126739, ENSMUST00000127446, ENSMUST00000128532, ENSMUST00000147393, ENSMUST00000148384
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000054674   ⟹   ENSMUSP00000054263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,190,193 - 88,205,355 (-)Ensembl
GRCm38.p6 Ensembl188,262,471 - 88,277,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000065420   ⟹   ENSMUSP00000070419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,192,550 - 88,205,279 (-)Ensembl
GRCm38.p6 Ensembl188,264,828 - 88,277,557 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,202,434 - 88,205,301 (-)Ensembl
GRCm38.p6 Ensembl188,274,712 - 88,277,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127446   ⟹   ENSMUSP00000118659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,194,071 - 88,197,114 (-)Ensembl
GRCm38.p6 Ensembl188,266,349 - 88,269,392 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,197,059 - 88,200,841 (-)Ensembl
GRCm38.p6 Ensembl188,269,337 - 88,273,119 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147393   ⟹   ENSMUSP00000120753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,192,700 - 88,205,228 (-)Ensembl
GRCm38.p6 Ensembl188,264,978 - 88,277,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl188,197,100 - 88,198,669 (-)Ensembl
GRCm38.p6 Ensembl188,269,378 - 88,270,947 (-)Ensembl
RefSeq Acc Id: NM_198652   ⟹   NP_941054
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39188,186,578 - 88,205,301 (-)NCBI
GRCm38188,258,856 - 88,277,579 (-)NCBI
MGSCv37190,155,431 - 90,174,154 (-)RGD
Celera191,199,932 - 91,235,490 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529720   ⟹   XP_006529783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39188,190,835 - 88,205,366 (-)NCBI
GRCm38188,263,113 - 88,277,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529721   ⟹   XP_006529784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39188,190,831 - 88,205,354 (-)NCBI
GRCm38188,263,113 - 88,277,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529722   ⟹   XP_006529785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39188,190,835 - 88,205,351 (-)NCBI
GRCm38188,263,113 - 88,277,632 (-)NCBI
Sequence:
RefSeq Acc Id: NP_941054   ⟸   NM_198652
- UniProtKB: Q8C9A7 (UniProtKB/Swiss-Prot),   Q6BCZ4 (UniProtKB/Swiss-Prot),   Q6PG16 (UniProtKB/Swiss-Prot),   E9QKG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529784   ⟸   XM_006529721
- Peptide Label: isoform X2
- UniProtKB: Q8C9A7 (UniProtKB/Swiss-Prot),   Q6PG16 (UniProtKB/Swiss-Prot),   Q6BCZ4 (UniProtKB/Swiss-Prot),   E9Q4T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529783   ⟸   XM_006529720
- Peptide Label: isoform X1
- UniProtKB: Q8C9A7 (UniProtKB/Swiss-Prot),   Q6BCZ4 (UniProtKB/Swiss-Prot),   Q6PG16 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006529785   ⟸   XM_006529722
- Peptide Label: isoform X3
- UniProtKB: Q8C9A7 (UniProtKB/Swiss-Prot),   Q6PG16 (UniProtKB/Swiss-Prot),   Q6BCZ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000070419   ⟸   ENSMUST00000065420
RefSeq Acc Id: ENSMUSP00000054263   ⟸   ENSMUST00000054674
RefSeq Acc Id: ENSMUSP00000120753   ⟸   ENSMUST00000147393
RefSeq Acc Id: ENSMUSP00000118659   ⟸   ENSMUST00000127446
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PG16-F1-model_v2 AlphaFold Q6PG16 1-667 view protein structure

Promoters
RGD ID:6874416
Promoter ID:EPDNEW_M659
Type:initiation region
Name:Hjurp_1
Description:Mus musculus Holliday junction recognition protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38188,277,557 - 88,277,617EPDNEW
RGD ID:6817126
Promoter ID:MM_KWN:1565
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:BC062125_6430706D22RIK,   OTTMUST00000049212
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36190,165,616 - 90,166,717 (-)MPROMDB
RGD ID:6817885
Promoter ID:MM_KWN:1566
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000049214
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36190,168,141 - 90,168,641 (-)MPROMDB
RGD ID:6817886
Promoter ID:MM_KWN:1567
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   MEF_B4
Transcripts:OTTMUST00000049215
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36190,169,304 - 90,169,804 (-)MPROMDB
RGD ID:6817163
Promoter ID:MM_KWN:1568
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   ES_Cell,   Liver,   MEF_B4,   MEF_B6
Transcripts:UC007BYO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36190,172,281 - 90,173,492 (-)MPROMDB
RGD ID:6818691
Promoter ID:MM_KWN:1569
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100097,   NM_172505,   NM_172505_A730008H23RIK,   OTTMUST00000046903,   OTTMUST00000049209,   OTTMUST00000049211,   OTTMUST00000049213,   UC007BYN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36190,173,761 - 90,174,372 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685821 AgrOrtholog
Ensembl Genes ENSMUSG00000044783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054674 ENTREZGENE
  ENSMUST00000054674.15 UniProtKB/TrEMBL
  ENSMUST00000065420 ENTREZGENE
  ENSMUST00000065420.12 UniProtKB/TrEMBL
  ENSMUST00000127446.2 UniProtKB/TrEMBL
  ENSMUST00000147393.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2320 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HJURP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Scm3/HJURP UniProtKB/TrEMBL
KEGG Report mmu:212427 UniProtKB/Swiss-Prot
  mmu:381280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2685821 ENTREZGENE
NCBI Gene 381280 ENTREZGENE
PANTHER HOLLIDAY JUNCTION RECOGNITION PROTEIN UniProtKB/Swiss-Prot
  HOLLIDAY JUNCTION RECOGNITION PROTEIN UniProtKB/Swiss-Prot
  HOLLIDAY JUNCTION RECOGNITION PROTEIN UniProtKB/TrEMBL
  HOLLIDAY JUNCTION RECOGNITION PROTEIN UniProtKB/TrEMBL
Pfam HJURP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HJURP_mid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Scm3 UniProtKB/TrEMBL
PhenoGen Hjurp PhenoGen
UniProt D6RI36_MOUSE UniProtKB/TrEMBL
  E9Q4T0 ENTREZGENE, UniProtKB/TrEMBL
  E9QKG8 ENTREZGENE, UniProtKB/TrEMBL
  F6XR06_MOUSE UniProtKB/TrEMBL
  HJURP_MOUSE UniProtKB/Swiss-Prot
  Q3UX50_MOUSE UniProtKB/TrEMBL
  Q497U4_MOUSE UniProtKB/TrEMBL
  Q6BCZ4 ENTREZGENE
  Q6P6N2_MOUSE UniProtKB/TrEMBL
  Q6PG16 ENTREZGENE
  Q8C9A7 ENTREZGENE
  Q8CCK3_MOUSE UniProtKB/TrEMBL
  Q99KB1_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6BCZ4 UniProtKB/Swiss-Prot
  Q8C9A7 UniProtKB/Swiss-Prot