Caln1 (calneuron 1) - Rat Genome Database

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Gene: Caln1 (calneuron 1) Mus musculus
Analyze
Symbol: Caln1
Name: calneuron 1
RGD ID: 1314121
MGI Page MGI
Description: Predicted to enable calcium ion binding activity. Located in trans-Golgi network membrane. Is expressed in central nervous system and retina. Orthologous to human CALN1 (calneuron 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9630012C17Rik; Cab; Cabp8; calcium-binding protein 8; calneuron I; calneuron-1; calneuron-I; MNCb-0849
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,398,245 - 130,876,253 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,398,296 - 130,876,253 (+)EnsemblGRCm39 Ensembl
GRCm385130,369,404 - 130,846,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,369,455 - 130,847,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,845,328 - 131,316,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,733,504 - 131,124,904 (+)NCBIMGSCv36mm8
Celera5127,382,573 - 127,853,118 (+)NCBICelera
Cytogenetic Map5G1.3- G2NCBI
cM Map569.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Calmodulin and Ca2+-binding proteins (CaBPs): variations on a theme. Haeseleer F and Palczewski K, Adv Exp Med Biol 2002;514:303-17.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11286509   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:19338761   PMID:20798045   PMID:21267068   PMID:21677750   PMID:21873635   PMID:37355986  


Genomics

Comparative Map Data
Caln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,398,245 - 130,876,253 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,398,296 - 130,876,253 (+)EnsemblGRCm39 Ensembl
GRCm385130,369,404 - 130,846,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,369,455 - 130,847,412 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,845,328 - 131,316,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,733,504 - 131,124,904 (+)NCBIMGSCv36mm8
Celera5127,382,573 - 127,853,118 (+)NCBICelera
Cytogenetic Map5G1.3- G2NCBI
cM Map569.29NCBI
CALN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38771,779,491 - 72,504,279 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl771,779,491 - 72,447,151 (-)EnsemblGRCh38hg38GRCh38
GRCh37771,244,476 - 71,912,128 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36770,882,412 - 71,515,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 34770,692,565 - 71,356,697NCBI
Celera764,619,023 - 65,251,883 (-)NCBICelera
Cytogenetic Map7q11.22NCBI
HuRef767,413,680 - 68,045,799 (-)NCBIHuRef
CHM1_1771,338,794 - 71,972,776 (-)NCBICHM1_1
T2T-CHM13v2.0772,996,291 - 73,722,754 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2770,577,428 - 71,210,210 (-)NCBI
Caln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,447,964 - 31,939,847 (-)NCBIGRCr8
mRatBN7.21225,811,743 - 26,303,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,819,628 - 26,303,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1226,965,639 - 27,399,677 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01227,576,121 - 28,010,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,636,702 - 27,071,428 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,307,117 - 29,796,996 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,308,341 - 29,743,705 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,251,402 - 31,733,594 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41226,860,409 - 27,287,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11226,723,371 - 27,193,845 (-)NCBI
Celera1227,542,062 - 27,969,078 (-)NCBICelera
Cytogenetic Map12q12NCBI
Caln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554569,079,917 - 9,543,754 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554569,079,917 - 9,547,459 (+)NCBIChiLan1.0ChiLan1.0
CALN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2692,121,039 - 92,783,896 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17140,385,673 - 141,048,531 (+)NCBINHGRI_mPanPan1
PanPan1.1779,659,066 - 80,324,368 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl779,667,347 - 80,280,077 (-)Ensemblpanpan1.1panPan2
CALN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,545,151 - 2,067,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl61,556,003 - 2,067,352 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha63,244,577 - 3,773,112 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,356,619 - 1,878,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl61,367,490 - 1,878,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.161,285,832 - 1,814,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.061,293,382 - 1,820,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,465,357 - 1,994,422 (+)NCBIUU_Cfam_GSD_1.0
Caln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,873,811 - 127,223,088 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365436,820,362 - 7,135,207 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365436,813,479 - 7,054,644 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1282,846,868 - 3,578,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607013,019,544 - 13,761,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247409,088,443 - 9,581,642 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247409,049,512 - 9,589,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Caln1
18492 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1960
Count of miRNA genes:529
Interacting mature miRNAs:619
Transcripts:ENSMUST00000086029, ENSMUST00000111287, ENSMUST00000111288, ENSMUST00000141131
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse

Markers in Region
D5Mit164  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,530,948 - 130,531,089UniSTSGRCm38
MGSCv375131,006,818 - 131,006,959UniSTSGRCm37
Cytogenetic Map5FUniSTS
cM Map572.0UniSTS
Whitehead Genetic562.3UniSTS
D6Mit145  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,456,403 - 130,456,516UniSTSGRCm38
MGSCv375130,932,273 - 130,932,386UniSTSGRCm37
Cytogenetic Map5FUniSTS
cM Map638.0UniSTS
cM Map5 UniSTS
Whitehead Genetic629.5UniSTS
UniSTS:10408  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38632,144,340 - 32,144,443UniSTSGRCm38
MGSCv37632,094,340 - 32,094,443UniSTSGRCm37
Celera632,131,593 - 32,131,696UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map6B1UniSTS
D9S55  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,590,083 - 130,590,655UniSTSGRCm38
GRCm381095,967,076 - 95,967,338UniSTSGRCm38
MGSCv371095,429,710 - 95,429,972UniSTSGRCm37
MGSCv375131,065,953 - 131,066,525UniSTSGRCm37
Celera1097,943,341 - 97,943,650UniSTS
Celera5127,604,280 - 127,604,852UniSTS
Cytogenetic Map10C3UniSTS
Cytogenetic Map5FUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB041539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC169670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF282251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY127416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY274079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000086029   ⟹   ENSMUSP00000083193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,398,296 - 130,869,015 (+)Ensembl
GRCm38.p6 Ensembl5130,369,455 - 130,840,174 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111287   ⟹   ENSMUSP00000106918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,476,853 - 130,869,477 (+)Ensembl
GRCm38.p6 Ensembl5130,448,012 - 130,840,636 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111288   ⟹   ENSMUSP00000106919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,477,642 - 130,876,253 (+)Ensembl
GRCm38.p6 Ensembl5130,448,801 - 130,847,412 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141131   ⟹   ENSMUSP00000144225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,476,290 - 130,646,776 (+)Ensembl
GRCm38.p6 Ensembl5130,447,449 - 130,617,935 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202728   ⟹   ENSMUSP00000143823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,413,538 - 130,535,014 (+)Ensembl
GRCm38.p6 Ensembl5130,384,697 - 130,506,173 (+)Ensembl
RefSeq Acc Id: NM_021371   ⟹   NP_067346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,477,633 - 130,869,486 (+)NCBI
GRCm385130,448,792 - 130,840,645 (+)NCBI
MGSCv375130,845,328 - 131,316,515 (+)RGD
Celera5127,382,573 - 127,853,118 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_181045   ⟹   NP_851388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,398,281 - 130,876,253 (+)NCBI
GRCm385130,369,458 - 130,840,645 (+)NCBI
MGSCv375130,845,328 - 131,316,515 (+)RGD
Celera5127,382,573 - 127,853,118 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504366   ⟹   XP_006504429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,477,178 - 130,875,166 (+)NCBI
GRCm385130,448,337 - 130,846,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504367   ⟹   XP_006504430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,398,248 - 130,875,166 (+)NCBI
GRCm385130,369,404 - 130,846,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504368   ⟹   XP_006504431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,413,493 - 130,874,429 (+)NCBI
GRCm385130,384,641 - 130,845,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504369   ⟹   XP_006504432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,398,248 - 130,875,166 (+)NCBI
GRCm385130,369,404 - 130,846,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504372   ⟹   XP_006504435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,412,860 - 130,875,166 (+)NCBI
GRCm385130,384,641 - 130,845,578 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504373   ⟹   XP_006504436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,476,822 - 130,875,166 (+)NCBI
GRCm385130,448,017 - 130,846,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504374   ⟹   XP_006504437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,476,295 - 130,875,166 (+)NCBI
GRCm385130,447,454 - 130,846,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164784   ⟹   XP_036020677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,414,544 - 130,875,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164785   ⟹   XP_036020678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,483,590 - 130,875,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164786   ⟹   XP_036020679
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,398,245 - 130,875,166 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_067346 (Get FASTA)   NCBI Sequence Viewer  
  NP_851388 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504429 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504430 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504431 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504432 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504435 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504436 (Get FASTA)   NCBI Sequence Viewer  
  XP_006504437 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020677 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020678 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020679 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH57129 (Get FASTA)   NCBI Sequence Viewer  
  AAH58963 (Get FASTA)   NCBI Sequence Viewer  
  AAK15156 (Get FASTA)   NCBI Sequence Viewer  
  BAA95024 (Get FASTA)   NCBI Sequence Viewer  
  BAC29219 (Get FASTA)   NCBI Sequence Viewer  
  BAC38115 (Get FASTA)   NCBI Sequence Viewer  
  BAE34592 (Get FASTA)   NCBI Sequence Viewer  
  BAE34716 (Get FASTA)   NCBI Sequence Viewer  
  BAE37437 (Get FASTA)   NCBI Sequence Viewer  
  EDL19463 (Get FASTA)   NCBI Sequence Viewer  
  EDL19464 (Get FASTA)   NCBI Sequence Viewer  
  EDL19465 (Get FASTA)   NCBI Sequence Viewer  
  EDL19466 (Get FASTA)   NCBI Sequence Viewer  
  EDL19467 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000083193
  ENSMUSP00000083193.4
  ENSMUSP00000106918
  ENSMUSP00000106918.2
  ENSMUSP00000106919
  ENSMUSP00000106919.3
  ENSMUSP00000143823.2
  ENSMUSP00000144225.2
GenBank Protein Q9JJG7 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_067346   ⟸   NM_021371
- Peptide Label: isoform b
- UniProtKB: Q542R1 (UniProtKB/TrEMBL),   Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_851388   ⟸   NM_181045
- Peptide Label: isoform a
- UniProtKB: Q9JJG7 (UniProtKB/Swiss-Prot),   F8WHE1 (UniProtKB/TrEMBL),   Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504432   ⟸   XM_006504369
- Peptide Label: isoform X2
- UniProtKB: Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504430   ⟸   XM_006504367
- Peptide Label: isoform X2
- UniProtKB: Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504435   ⟸   XM_006504372
- Peptide Label: isoform X4
- UniProtKB: Q9JJG7 (UniProtKB/Swiss-Prot),   F8WHE1 (UniProtKB/TrEMBL),   Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504431   ⟸   XM_006504368
- Peptide Label: isoform X2
- UniProtKB: Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504437   ⟸   XM_006504374
- Peptide Label: isoform X5
- UniProtKB: Q542R1 (UniProtKB/TrEMBL),   Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504436   ⟸   XM_006504373
- Peptide Label: isoform X5
- UniProtKB: Q542R1 (UniProtKB/TrEMBL),   Q8CBJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504429   ⟸   XM_006504366
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000106918   ⟸   ENSMUST00000111287
RefSeq Acc Id: ENSMUSP00000106919   ⟸   ENSMUST00000111288
RefSeq Acc Id: ENSMUSP00000083193   ⟸   ENSMUST00000086029
RefSeq Acc Id: ENSMUSP00000143823   ⟸   ENSMUST00000202728
RefSeq Acc Id: ENSMUSP00000144225   ⟸   ENSMUST00000141131
RefSeq Acc Id: XP_036020679   ⟸   XM_036164786
- Peptide Label: isoform X4
- UniProtKB: Q9JJG7 (UniProtKB/Swiss-Prot),   F8WHE1 (UniProtKB/Swiss-Prot),   Q8CBJ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020677   ⟸   XM_036164784
- Peptide Label: isoform X2
- UniProtKB: Q8CBJ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020678   ⟸   XM_036164785
- Peptide Label: isoform X3
- UniProtKB: Q8CBJ9 (UniProtKB/TrEMBL)
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJG7-F1-model_v2 AlphaFold Q9JJG7 1-261 view protein structure

Promoters
RGD ID:6888230
Promoter ID:EPDNEW_M7566
Type:multiple initiation site
Name:Caln1_1
Description:Mus musculus calneuron 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7567  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385130,448,843 - 130,448,903EPDNEW
RGD ID:6888232
Promoter ID:EPDNEW_M7567
Type:single initiation site
Name:Caln1_2
Description:Mus musculus calneuron 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7566  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385130,451,297 - 130,451,357EPDNEW
RGD ID:6837213
Promoter ID:MM_KWN:44260
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_021371
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365130,925,011 - 130,925,511 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2155987 AgrOrtholog
Ensembl Genes ENSMUSG00000060371 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000086029 ENTREZGENE
  ENSMUST00000086029.10 UniProtKB/Swiss-Prot
  ENSMUST00000111287 ENTREZGENE
  ENSMUST00000111287.8 UniProtKB/Swiss-Prot
  ENSMUST00000111288 ENTREZGENE
  ENSMUST00000111288.4 UniProtKB/Swiss-Prot
  ENSMUST00000141131.5 UniProtKB/TrEMBL
  ENSMUST00000202728.2 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:140904 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2155987 ENTREZGENE
NCBI Gene 140904 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALCIUM-BINDING PROTEIN 8-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_6 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Caln1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YTS0_MOUSE UniProtKB/TrEMBL
  A0A0J9YUK5_MOUSE UniProtKB/TrEMBL
  CABP8_MOUSE UniProtKB/Swiss-Prot
  F8WHE1 ENTREZGENE
  Q542R1 ENTREZGENE, UniProtKB/TrEMBL
  Q8CBJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q9JJG7 ENTREZGENE
UniProt Secondary F8WHE1 UniProtKB/Swiss-Prot