Esrp1 (epithelial splicing regulatory protein 1) - Rat Genome Database

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Gene: Esrp1 (epithelial splicing regulatory protein 1) Mus musculus
Analyze
Symbol: Esrp1
Name: epithelial splicing regulatory protein 1
RGD ID: 1314096
MGI Page MGI
Description: Predicted to enable mRNA binding activity. Involved in regulation of RNA splicing and regulation of inner ear auditory receptor cell fate specification. Acts upstream of or within alternative mRNA splicing, via spliceosome; morphogenesis of a branching epithelium; and positive regulation of epithelial cell proliferation. Predicted to be located in nuclear body. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alimentary system; branchial arch; embryo ectoderm; extraembryonic component; and sensory organ. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 109. Orthologous to human ESRP1 (epithelial splicing regulatory protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210008M09Rik; A630065D16; BC031468; MGC25805; Rbm3; Rbm35a; RNA binding motif protein 35A; RNA-binding motif protein 35A; RNA-binding protein 35A; RP23-322G9.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,331,933 - 11,386,783 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,331,933 - 11,386,783 (-)EnsemblGRCm39 Ensembl
GRCm38411,331,933 - 11,386,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,331,933 - 11,386,783 (-)EnsemblGRCm38mm10GRCm38
MGSCv37411,259,185 - 11,313,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36411,259,080 - 11,311,520 (-)NCBIMGSCv36mm8
Celera411,143,181 - 11,197,808 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
mRNA binding  (IBA,ISO,ISS)
protein binding  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood vessel morphology  (IEA)
abnormal craniofacial morphology  (IEA)
abnormal epidermal layer morphology  (IAGP)
abnormal fetal growth/weight/body size  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal kidney morphology  (IEA)
abnormal lateral nasal prominence morphology  (IAGP)
abnormal limb morphology  (IEA)
abnormal mandible morphology  (IAGP)
abnormal medial nasal prominence morphology  (IAGP)
abnormal nasal pit morphology  (IAGP)
abnormal ovary morphology  (IEA)
abnormal palatal shelf fusion at midline  (IAGP)
abnormal palate morphology  (IAGP)
abnormal placenta morphology  (IEA)
abnormal placenta vasculature  (IEA)
absent humerus  (IAGP)
absent lungs  (IAGP)
absent mandibular coronoid process  (IAGP)
absent premaxilla  (IAGP)
absent radius  (IAGP)
absent salivary gland  (IAGP)
bilateral cleft palate  (IAGP)
bilateral cleft upper lip  (IAGP)
circling  (IEA)
cleft hard palate  (IAGP)
cleft palate  (IAGP)
cleft primary palate  (IAGP)
cleft secondary palate  (IAGP)
cleft soft palate  (IAGP)
cleft upper lip  (IAGP)
decreased bone mineral content  (IEA)
decreased bone mineral density  (IEA)
decreased fetal weight  (IAGP)
decreased hair follicle number  (IAGP)
decreased palatal shelf size  (IAGP)
dry skin  (IAGP)
edema  (IEA)
embryonic growth retardation  (IEA)
enlarged kidney  (IEA)
facial cleft  (IEA)
hemorrhage  (IEA)
hyperactivity  (IEA)
impaired skin barrier function  (IAGP)
increased mouth width  (IAGP)
mandible hypoplasia  (IAGP)
maxillary shelf hypoplasia  (IAGP)
nasal bone hypoplasia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
palatal shelf hypoplasia  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
palatine bone hypoplasia  (IAGP)
polydactyly  (IEA)
postnatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
shiny skin  (IAGP)
short limbs  (IAGP)
short rostral-caudal axis  (IAGP)
small kidney  (IAGP)
small premaxilla  (IAGP)
syndactyly  (IAGP)
thin epidermis  (IAGP)
thin skin  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:17015433   PMID:17328885   PMID:19285943   PMID:20533405   PMID:20711167   PMID:21377456   PMID:21873635   PMID:22673910   PMID:23233200   PMID:24015231   PMID:24552714   PMID:26371508  
PMID:26903501   PMID:27404344   PMID:27798109   PMID:28363736   PMID:28975893   PMID:29107558   PMID:29324788   PMID:30049844   PMID:30485810   PMID:32005677   PMID:32253237   PMID:33158935  
PMID:33234718   PMID:33318146   PMID:35476669   PMID:36238894   PMID:37027295   PMID:37090731   PMID:38355793  


Genomics

Comparative Map Data
Esrp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,331,933 - 11,386,783 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,331,933 - 11,386,783 (-)EnsemblGRCm39 Ensembl
GRCm38411,331,933 - 11,386,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,331,933 - 11,386,783 (-)EnsemblGRCm38mm10GRCm38
MGSCv37411,259,185 - 11,313,930 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36411,259,080 - 11,311,520 (-)NCBIMGSCv36mm8
Celera411,143,181 - 11,197,808 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.11NCBI
ESRP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,641,174 - 94,707,466 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,641,074 - 94,707,466 (+)EnsemblGRCh38hg38GRCh38
GRCh37895,653,402 - 95,719,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,722,576 - 95,788,870 (+)NCBINCBI36Build 36hg18NCBI36
Celera891,839,462 - 91,906,238 (+)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,861,953 - 90,928,360 (+)NCBIHuRef
CHM1_1895,693,809 - 95,760,084 (+)NCBICHM1_1
T2T-CHM13v2.0895,766,111 - 95,832,462 (+)NCBIT2T-CHM13v2.0
Esrp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,224,831 - 29,279,381 (-)NCBIGRCr8
mRatBN7.2524,427,611 - 24,482,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl524,428,717 - 24,482,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx526,617,058 - 26,670,437 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,210,083 - 28,263,462 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,010,977 - 28,064,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0524,576,988 - 24,631,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl524,576,991 - 24,631,698 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0529,302,577 - 29,357,299 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4525,175,774 - 25,229,179 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera523,646,895 - 23,700,274 (-)NCBICelera
Cytogenetic Map5q13NCBI
Esrp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,813,593 - 10,882,921 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,813,831 - 10,881,238 (+)NCBIChiLan1.0ChiLan1.0
ESRP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,970,735 - 112,037,188 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1887,507,763 - 87,574,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0891,261,488 - 91,327,990 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1893,202,915 - 93,532,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl893,203,198 - 93,530,653 (+)Ensemblpanpan1.1panPan2
ESRP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,322,516 - 39,388,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,333,117 - 39,387,337 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,494,996 - 39,550,483 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02939,537,035 - 39,592,713 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,537,281 - 39,591,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,549,474 - 39,604,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,545,306 - 39,600,742 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,986,649 - 40,042,146 (+)NCBIUU_Cfam_GSD_1.0
Esrp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,101,052 - 40,159,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,633,071 - 7,691,655 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,633,266 - 7,690,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESRP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl441,993,948 - 42,061,236 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1441,993,944 - 42,061,706 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,307,127 - 45,373,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ESRP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,609,723 - 89,679,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,608,014 - 89,679,037 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603951,157,747 - 51,229,326 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Esrp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,998,579 - 2,073,950 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247631,998,560 - 2,073,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Esrp1
3252 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2561
Count of miRNA genes:629
Interacting mature miRNAs:791
Transcripts:ENSMUST00000043781, ENSMUST00000108310, ENSMUST00000108311, ENSMUST00000108313, ENSMUST00000127399, ENSMUST00000147342, ENSMUST00000155519
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse

Markers in Region
Rbm35a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS
cM Map4 UniSTS
Esrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS
Esrp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_194055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA647208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB674634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF161102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ081693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV648780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV654302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV657411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV659240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043781   ⟹   ENSMUSP00000037921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,331,933 - 11,386,679 (-)Ensembl
GRCm38.p6 Ensembl411,331,933 - 11,386,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108310   ⟹   ENSMUSP00000103946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,333,005 - 11,386,679 (-)Ensembl
GRCm38.p6 Ensembl411,333,005 - 11,386,679 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108311   ⟹   ENSMUSP00000103947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,332,038 - 11,386,783 (-)Ensembl
GRCm38.p6 Ensembl411,332,038 - 11,386,783 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108313   ⟹   ENSMUSP00000103949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,331,933 - 11,386,783 (-)Ensembl
GRCm38.p6 Ensembl411,331,933 - 11,386,783 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,340,559 - 11,344,245 (-)Ensembl
GRCm38.p6 Ensembl411,340,559 - 11,344,245 (-)Ensembl
Ensembl Acc Id: ENSMUST00000147342   ⟹   ENSMUSP00000121117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,333,005 - 11,367,178 (-)Ensembl
GRCm38.p6 Ensembl411,333,005 - 11,367,178 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155519   ⟹   ENSMUSP00000119598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl411,357,586 - 11,386,394 (-)Ensembl
GRCm38.p6 Ensembl411,357,586 - 11,386,394 (-)Ensembl
RefSeq Acc Id: NM_001290383   ⟹   NP_001277312
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,783 (-)NCBI
GRCm38411,331,933 - 11,386,783 (-)NCBI
Celera411,143,076 - 11,197,808 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001347052   ⟹   NP_001333981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: NM_194055   ⟹   NP_918944
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,783 (-)NCBI
GRCm38411,331,933 - 11,386,783 (-)NCBI
MGSCv37411,259,185 - 11,313,930 (-)RGD
Celera411,143,076 - 11,197,808 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537715   ⟹   XP_006537778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006537716   ⟹   XP_006537779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006537717   ⟹   XP_006537780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006537718   ⟹   XP_006537781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954898
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39411,331,933 - 11,386,778 (-)NCBI
GRCm38411,331,933 - 11,386,778 (-)NCBI
Sequence:
RefSeq Acc Id: NP_918944   ⟸   NM_194055
- Peptide Label: isoform 1
- UniProtKB: F8WGU3 (UniProtKB/TrEMBL),   Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537778   ⟸   XM_006537715
- Peptide Label: isoform X1
- UniProtKB: Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537781   ⟸   XM_006537718
- Peptide Label: isoform X4
- UniProtKB: Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537780   ⟸   XM_006537717
- Peptide Label: isoform X3
- UniProtKB: Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537779   ⟸   XM_006537716
- Peptide Label: isoform X2
- UniProtKB: Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277312   ⟸   NM_001290383
- Peptide Label: isoform 2
- UniProtKB: Q8K0G2 (UniProtKB/Swiss-Prot),   Q8C9F5 (UniProtKB/Swiss-Prot),   Q6PCL4 (UniProtKB/Swiss-Prot),   Q3US41 (UniProtKB/Swiss-Prot),   Q3TLQ3 (UniProtKB/Swiss-Prot),   A2AJQ8 (UniProtKB/Swiss-Prot),   A2AJQ7 (UniProtKB/Swiss-Prot),   A2AJQ6 (UniProtKB/Swiss-Prot),   A2AJQ5 (UniProtKB/Swiss-Prot),   A2AJQ4 (UniProtKB/Swiss-Prot),   Z4YJI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333981   ⟸   NM_001347052
- Peptide Label: isoform 3
- UniProtKB: Z4YJI3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000121117   ⟸   ENSMUST00000147342
Ensembl Acc Id: ENSMUSP00000103947   ⟸   ENSMUST00000108311
Ensembl Acc Id: ENSMUSP00000103946   ⟸   ENSMUST00000108310
Ensembl Acc Id: ENSMUSP00000103949   ⟸   ENSMUST00000108313
Ensembl Acc Id: ENSMUSP00000037921   ⟸   ENSMUST00000043781
Ensembl Acc Id: ENSMUSP00000119598   ⟸   ENSMUST00000155519
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3US41-F1-model_v2 AlphaFold Q3US41 1-680 view protein structure

Promoters
RGD ID:6836060
Promoter ID:MM_KWN:36675
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung
Transcripts:ENSMUST00000041113,   ENSMUST00000108310,   ENSMUST00000108313,   NM_194055,   OTTMUST00000010096,   UC008RZM.1,   UC008RZN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36411,314,031 - 11,314,612 (-)MPROMDB
RGD ID:6882816
Promoter ID:EPDNEW_M4859
Type:initiation region
Name:Esrp1_2
Description:Mus musculus epithelial splicing regulatory protein 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4860  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38411,386,580 - 11,386,640EPDNEW
RGD ID:6882818
Promoter ID:EPDNEW_M4860
Type:initiation region
Name:Esrp1_1
Description:Mus musculus epithelial splicing regulatory protein 1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4859  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38411,386,745 - 11,386,805EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917326 AgrOrtholog
Ensembl Genes ENSMUSG00000040728 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043781 ENTREZGENE
  ENSMUST00000043781.14 UniProtKB/TrEMBL
  ENSMUST00000108310 ENTREZGENE
  ENSMUST00000108310.8 UniProtKB/Swiss-Prot
  ENSMUST00000108311 ENTREZGENE
  ENSMUST00000108311.9 UniProtKB/TrEMBL
  ENSMUST00000108313 ENTREZGENE
  ENSMUST00000108313.8 UniProtKB/Swiss-Prot
  ENSMUST00000147342.8 UniProtKB/TrEMBL
  ENSMUST00000155519.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ESRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:207920 UniProtKB/Swiss-Prot
MGD MGI:1917326 ENTREZGENE
NCBI Gene Esrp1 ENTREZGENE
PANTHER EPITHELIAL SPLICING REGULATORY PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Esrp1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53098 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AJQ4 ENTREZGENE
  A2AJQ5 ENTREZGENE
  A2AJQ6 ENTREZGENE
  A2AJQ7 ENTREZGENE
  A2AJQ8 ENTREZGENE
  ESRP1_MOUSE UniProtKB/Swiss-Prot
  F8WGU3 ENTREZGENE, UniProtKB/TrEMBL
  Q3TLQ3 ENTREZGENE
  Q3US41 ENTREZGENE
  Q6PCL4 ENTREZGENE
  Q8C9F5 ENTREZGENE
  Q8K0G2 ENTREZGENE
  Z4YJI3 ENTREZGENE, UniProtKB/TrEMBL
  Z4YMQ5_MOUSE UniProtKB/TrEMBL
  Z4YMV4_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AJQ4 UniProtKB/Swiss-Prot
  A2AJQ5 UniProtKB/Swiss-Prot
  A2AJQ6 UniProtKB/Swiss-Prot
  A2AJQ7 UniProtKB/Swiss-Prot
  A2AJQ8 UniProtKB/Swiss-Prot
  Q3TLQ3 UniProtKB/Swiss-Prot
  Q6PCL4 UniProtKB/Swiss-Prot
  Q8C9F5 UniProtKB/Swiss-Prot
  Q8K0G2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Esrp1  epithelial splicing regulatory protein 1  2210008M09Rik  RIKEN cDNA 2210008M09 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2210008M09Rik  RIKEN cDNA 2210008M09 gene  Esrp1  epithelial splicing regulatory protein 1  Symbol and/or name change 5135510 APPROVED