Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) - Rat Genome Database

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Gene: Dnajb4 (DnaJ heat shock protein family (Hsp40) member B4) Mus musculus
Analyze
Symbol: Dnajb4
Name: DnaJ heat shock protein family (Hsp40) member B4
RGD ID: 1314093
MGI Page MGI
Description: Predicted to enable ATPase activator activity; protein-folding chaperone binding activity; and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and negative regulation of transcription by RNA polymerase II. Predicted to be located in Z disc; nucleoplasm; and plasma membrane. Predicted to be active in cytosol. Used to study distal myopathy. Human ortholog(s) of this gene implicated in congenital myopathy 21. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700029A20Rik; 2010306G19Rik; 5730460G06Rik; DnaJ (Hsp40) homolog, subfamily B, member 4; dnaJ homolog subfamily B member 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,887,217 - 151,915,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,884,148 - 151,915,939 (-)EnsemblGRCm39 Ensembl
GRCm383152,181,580 - 152,210,432 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,178,511 - 152,210,302 (-)EnsemblGRCm38mm10GRCm38
MGSCv373151,846,919 - 151,873,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,121,482 - 152,147,469 (-)NCBIMGSCv36mm8
Celera3158,661,623 - 158,688,134 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(E)-cinnamyl alcohol  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-benzothiazole-2-thiol  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,5-hexanedione  (ISO)
2,6-dinitrotoluene  (ISO)
2-bromo-2-(bromomethyl)pentanedinitrile  (ISO)
2-butoxyethanol  (EXP)
2-Ethylhexyl acrylate  (ISO)
2-hydroxyethyl methacrylate  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4',5-tetrachlorosalicylanilide  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (EXP)
4-nitrobenzyl bromide  (ISO)
abietic acid  (ISO)
aconitine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
antimonite  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Aurin  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
Bisphenol B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbaryl  (ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
chloropicrin  (ISO)
chrysene  (EXP)
cinnamyl alcohol  (ISO)
cisplatin  (ISO)
citral  (ISO)
clofibrate  (EXP)
clotrimazole  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crotonaldehyde  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
dihydroxyacetone  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dodecan-1-ol  (ISO)
Dodecyl gallate  (ISO)
elemental selenium  (ISO)
elesclomol  (ISO)
ethyl methanesulfonate  (ISO)
eugenol  (ISO)
farnesol  (ISO)
fenofibrate  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gedunin  (ISO)
genistein  (EXP)
gentamycin  (ISO)
geranial  (ISO)
glyoxal  (ISO)
isoeugenol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel dichloride  (ISO)
ochratoxin A  (ISO)
organoselenium compound  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (EXP)
phenobarbital  (EXP)
phlorizin  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resorcinol  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
SCH 23390  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thalidomide  (ISO)
thimerosal  (ISO)
thiostrepton  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trans-isoeugenol  (ISO)
triadimefon  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
Tungsten carbide  (ISO)
undecanal  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc pyrithione  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)
membrane  (IEA)
nucleoplasm  (ISO)
plasma membrane  (ISO)
Z disc  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:23743496   PMID:27065329   PMID:27113764   PMID:31138677   PMID:32325033   PMID:35216179   PMID:35983991   PMID:36264506   PMID:36512060  


Genomics

Comparative Map Data
Dnajb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393151,887,217 - 151,915,720 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3151,884,148 - 151,915,939 (-)EnsemblGRCm39 Ensembl
GRCm383152,181,580 - 152,210,432 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3152,178,511 - 152,210,302 (-)EnsemblGRCm38mm10GRCm38
MGSCv373151,846,919 - 151,873,263 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363152,121,482 - 152,147,469 (-)NCBIMGSCv36mm8
Celera3158,661,623 - 158,688,134 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.03NCBI
DNAJB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,979,175 - 78,017,964 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,979,175 - 78,017,964 (+)EnsemblGRCh38hg38GRCh38
GRCh37178,444,859 - 78,483,648 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,243,224 - 78,255,586 (+)NCBINCBI36Build 36hg18NCBI36
Build 34178,182,656 - 78,195,014NCBI
Celera176,709,697 - 76,722,060 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef176,602,292 - 76,614,655 (+)NCBIHuRef
CHM1_1178,587,021 - 78,599,380 (+)NCBICHM1_1
T2T-CHM13v2.0177,817,970 - 77,856,789 (+)NCBIT2T-CHM13v2.0
Dnajb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82243,790,296 - 243,819,042 (-)NCBIGRCr8
mRatBN7.22241,129,346 - 241,159,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2241,130,340 - 241,159,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2248,944,119 - 248,972,815 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02246,831,137 - 246,859,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02241,730,451 - 241,759,204 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02257,394,692 - 257,425,344 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2257,394,818 - 257,425,242 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02276,071,439 - 276,102,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42250,663,022 - 250,685,242 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2233,065,020 - 233,093,753 (-)NCBICelera
Cytogenetic Map2q45NCBI
Dnajb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542315,212,579 - 15,245,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542315,212,579 - 15,245,538 (-)NCBIChiLan1.0ChiLan1.0
DNAJB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21148,867,698 - 148,910,246 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,030,287 - 148,072,833 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,198,130 - 77,237,014 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,280,121 - 79,318,855 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,305,605 - 79,318,199 (+)Ensemblpanpan1.1panPan2
DNAJB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1668,878,823 - 68,923,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl668,879,690 - 68,888,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha671,536,300 - 71,581,141 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0669,463,848 - 69,508,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl669,463,850 - 69,507,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1668,971,033 - 69,015,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0668,915,350 - 68,959,992 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0669,402,186 - 69,446,409 (-)NCBIUU_Cfam_GSD_1.0
Dnajb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505889,250,579 - 89,286,229 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365714,785,324 - 4,800,215 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365714,785,351 - 4,796,581 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6135,243,937 - 135,281,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16135,243,927 - 135,281,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26125,425,681 - 125,462,891 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12055,158,552 - 55,172,475 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2055,157,327 - 55,171,301 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603362,320,060 - 62,356,906 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474219,249,122 - 19,260,502 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474219,249,122 - 19,279,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajb4
994 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:932
Count of miRNA genes:376
Interacting mature miRNAs:442
Transcripts:ENSMUST00000029669, ENSMUST00000050073, ENSMUST00000134701, ENSMUST00000144950, ENSMUST00000153355
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143352986156364108Mouse
10045615Hrtfm8_mheart failure modifier 8 (mouse)Not determined3148451045152592311Mouse

Markers in Region
C87399  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383152,184,179 - 152,184,292UniSTSGRCm38
MGSCv373151,847,143 - 151,847,256UniSTSGRCm37
Celera3158,661,847 - 158,661,960UniSTS
Cytogenetic Map3H3UniSTS
Whitehead/MRC_RH31677.04UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF157598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB864009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ186491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN843420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000029669   ⟹   ENSMUSP00000029669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,890,718 - 151,915,656 (-)Ensembl
GRCm38.p6 Ensembl3152,185,081 - 152,210,019 (-)Ensembl
RefSeq Acc Id: ENSMUST00000050073   ⟹   ENSMUSP00000053916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,889,592 - 151,899,482 (-)Ensembl
GRCm38.p6 Ensembl3152,183,955 - 152,193,845 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,884,148 - 151,915,916 (-)Ensembl
GRCm38.p6 Ensembl3152,178,511 - 152,210,279 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144950   ⟹   ENSMUSP00000114356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,889,619 - 151,915,720 (-)Ensembl
GRCm38.p6 Ensembl3152,183,982 - 152,210,083 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,899,014 - 151,915,694 (-)Ensembl
GRCm38.p6 Ensembl3152,193,377 - 152,210,057 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,911,027 - 151,915,939 (-)Ensembl
GRCm38.p6 Ensembl3152,205,390 - 152,210,302 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197941   ⟹   ENSMUSP00000142834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3151,899,200 - 151,915,694 (-)Ensembl
GRCm38.p6 Ensembl3152,193,563 - 152,210,057 (-)Ensembl
RefSeq Acc Id: NM_001356363   ⟹   NP_001343292
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,887,217 - 151,915,720 (-)NCBI
GRCm383152,181,580 - 152,210,083 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356364   ⟹   NP_001343293
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,887,217 - 151,915,720 (-)NCBI
GRCm383152,181,580 - 152,210,083 (-)NCBI
Sequence:
RefSeq Acc Id: NM_025926   ⟹   NP_080202
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,887,217 - 151,899,482 (-)NCBI
GRCm383152,181,580 - 152,193,845 (-)NCBI
MGSCv373151,846,919 - 151,873,263 (-)RGD
Celera3158,661,539 - 158,687,918 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027287   ⟹   NP_081563
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,887,217 - 151,915,720 (-)NCBI
GRCm383152,181,580 - 152,210,083 (-)NCBI
MGSCv373151,846,919 - 151,873,263 (-)RGD
Celera3158,661,539 - 158,687,918 (-)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163237   ⟹   XP_036019130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393151,889,619 - 151,915,558 (-)NCBI
Sequence:
RefSeq Acc Id: NP_080202   ⟸   NM_025926
- Peptide Label: isoform 1
- UniProtKB: Q3TS92 (UniProtKB/Swiss-Prot),   Q9D9U2 (UniProtKB/Swiss-Prot),   Q9D832 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_081563   ⟸   NM_027287
- Peptide Label: isoform 1
- UniProtKB: Q3TS92 (UniProtKB/Swiss-Prot),   Q9D9U2 (UniProtKB/Swiss-Prot),   Q9D832 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343293   ⟸   NM_001356364
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001343292   ⟸   NM_001356363
- Peptide Label: isoform 1
- UniProtKB: Q9D832 (UniProtKB/Swiss-Prot),   Q3TS92 (UniProtKB/Swiss-Prot),   Q9D9U2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000114356   ⟸   ENSMUST00000144950
RefSeq Acc Id: ENSMUSP00000142834   ⟸   ENSMUST00000197941
RefSeq Acc Id: ENSMUSP00000029669   ⟸   ENSMUST00000029669
RefSeq Acc Id: ENSMUSP00000053916   ⟸   ENSMUST00000050073
RefSeq Acc Id: XP_036019130   ⟸   XM_036163237
- Peptide Label: isoform X1
- UniProtKB: Q9D832 (UniProtKB/Swiss-Prot),   Q3TS92 (UniProtKB/Swiss-Prot),   Q9D9U2 (UniProtKB/Swiss-Prot)
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D832-F1-model_v2 AlphaFold Q9D832 1-337 view protein structure

Promoters
RGD ID:6833656
Promoter ID:MM_KWN:36424
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_025926
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363151,856,646 - 151,857,662 (-)MPROMDB
RGD ID:6833666
Promoter ID:MM_KWN:36425
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000079497,   NM_027287,   NM_057172,   OTTMUST00000081899,   OTTMUST00000081900,   OTTMUST00000081901,   UC008RSS.1,   UC008RST.1,   UC008RSU.1,   UC008RSV.1,   UC008RSW.1,   UC008RSX.1,   UC008RSY.1,   UC008RSZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363151,869,616 - 151,874,062 (-)MPROMDB
RGD ID:6882638
Promoter ID:EPDNEW_M4770
Type:initiation region
Name:Dnajb4_1
Description:Mus musculus DnaJ heat shock protein family member B4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4771  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383152,193,757 - 152,193,817EPDNEW
RGD ID:6882640
Promoter ID:EPDNEW_M4771
Type:initiation region
Name:Dnajb4_2
Description:Mus musculus DnaJ heat shock protein family member B4 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4770  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383152,210,115 - 152,210,175EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914285 AgrOrtholog
Ensembl Genes ENSMUSG00000028035 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029669.4 UniProtKB/Swiss-Prot
  ENSMUST00000050073 ENTREZGENE
  ENSMUST00000050073.13 UniProtKB/Swiss-Prot
  ENSMUST00000144950 ENTREZGENE
  ENSMUST00000144950.8 UniProtKB/Swiss-Prot
  ENSMUST00000197941.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot
  Urease metallochaperone UreE, N-terminal domain UniProtKB/Swiss-Prot
InterPro DnaJ_C UniProtKB/Swiss-Prot
  DnaJ_domain UniProtKB/Swiss-Prot
  DnaJ_domain_CS UniProtKB/Swiss-Prot
  HSP40/DnaJ_pept-bd UniProtKB/Swiss-Prot
  J_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:67035 UniProtKB/Swiss-Prot
MGD MGI:1914285 ENTREZGENE
NCBI Gene 67035 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 4 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER UniProtKB/Swiss-Prot
Pfam DnaJ UniProtKB/Swiss-Prot
  DnaJ_C UniProtKB/Swiss-Prot
PhenoGen Dnajb4 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot
PROSITE DNAJ_1 UniProtKB/Swiss-Prot
  DNAJ_2 UniProtKB/Swiss-Prot
SMART DnaJ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot
  SSF49493 UniProtKB/Swiss-Prot
UniProt A0A0G2JEM9_MOUSE UniProtKB/TrEMBL
  DNJB4_MOUSE UniProtKB/Swiss-Prot
  Q3TS92 ENTREZGENE
  Q8BP73_MOUSE UniProtKB/TrEMBL
  Q9D832 ENTREZGENE
  Q9D9U2 ENTREZGENE
UniProt Secondary Q3TS92 UniProtKB/Swiss-Prot
  Q9D9U2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dnajb4  DnaJ heat shock protein family (Hsp40) member B4    DnaJ (Hsp40) homolog, subfamily B, member 4  Symbol and/or name change 5135510 APPROVED