Ttc39b (tetratricopeptide repeat domain 39B) - Rat Genome Database

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Gene: Ttc39b (tetratricopeptide repeat domain 39B) Mus musculus
Analyze
Symbol: Ttc39b
Name: tetratricopeptide repeat domain 39B
RGD ID: 1314049
MGI Page MGI
Description: Involved in several processes, including cholesterol homeostasis; negative regulation of cholesterol storage; and regulation of cholesterol efflux. Is expressed in cerebral cortex marginal layer and olfactory epithelium. Orthologous to human TTC39B (tetratricopeptide repeat domain 39B); INTERACTS WITH 1,2-dimethylhydrazine; 3,3',4,4'-tetrachlorobiphenyl; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1810054D07Rik; 9130422G05Rik; AI450603; AV103077; AW215585; RP23-17O21.2; tetratricopeptide repeat protein 39B; TPR repeat protein 39B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,138,537 - 83,242,488 (-)NCBIGRCm39mm39
GRCm39 Ensembl483,138,537 - 83,242,492 (-)Ensembl
GRCm38483,220,300 - 83,324,309 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,220,300 - 83,324,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv37482,866,205 - 82,970,093 (-)NCBIGRCm37mm9NCBIm37
MGSCv36482,698,073 - 82,795,420 (-)NCBImm8
Celera481,749,116 - 81,852,836 (-)NCBICelera
Cytogenetic Map4C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24154525   PMID:27383786   PMID:32325033  


Genomics

Comparative Map Data
Ttc39b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,138,537 - 83,242,488 (-)NCBIGRCm39mm39
GRCm39 Ensembl483,138,537 - 83,242,492 (-)Ensembl
GRCm38483,220,300 - 83,324,309 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,220,300 - 83,324,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv37482,866,205 - 82,970,093 (-)NCBIGRCm37mm9NCBIm37
MGSCv36482,698,073 - 82,795,420 (-)NCBImm8
Celera481,749,116 - 81,852,836 (-)NCBICelera
Cytogenetic Map4C3NCBI
TTC39B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl915,163,622 - 15,307,360 (-)EnsemblGRCh38hg38GRCh38
GRCh38915,163,622 - 15,307,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37915,163,620 - 15,307,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36915,161,561 - 15,297,244 (-)NCBINCBI36hg18NCBI36
Build 34915,161,560 - 15,297,244NCBI
Celera915,104,514 - 15,241,039 (-)NCBI
Cytogenetic Map9p22.3NCBI
HuRef915,134,002 - 15,270,023 (-)NCBIHuRef
CHM1_1915,171,189 - 15,307,662 (-)NCBICHM1_1
Ttc39b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2597,603,329 - 97,708,103 (-)NCBI
Rnor_6.0 Ensembl5101,304,982 - 101,405,656 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05101,304,982 - 101,405,689 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05105,325,543 - 105,422,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45102,064,300 - 102,162,978 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15102,082,312 - 102,168,201 (-)NCBI
Celera596,161,736 - 96,260,502 (-)NCBICelera
Cytogenetic Map5q31NCBI
Ttc39b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543418,070,536 - 18,150,858 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543418,063,520 - 18,150,858 (-)NCBIChiLan1.0ChiLan1.0
TTC39B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1915,502,811 - 15,633,374 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl915,502,811 - 15,633,374 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0914,994,729 - 15,127,877 (-)NCBIMhudiblu_PPA_v0panPan3
TTC39B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11135,465,198 - 35,557,800 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1135,472,016 - 35,589,835 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1134,114,261 - 34,244,798 (-)NCBI
ROS_Cfam_1.01136,369,628 - 36,498,809 (-)NCBI
UMICH_Zoey_3.11135,073,616 - 35,204,176 (-)NCBI
UNSW_CanFamBas_1.01134,863,606 - 34,994,353 (-)NCBI
UU_Cfam_GSD_1.01135,522,676 - 35,653,287 (-)NCBI
Ttc39b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947150,190,771 - 150,314,021 (-)NCBI
SpeTri2.0NW_0049365398,644,456 - 8,766,696 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC39B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1207,347,010 - 207,495,965 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11207,347,345 - 207,490,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21231,160,107 - 231,280,020 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC39B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11264,315,240 - 64,452,161 (+)NCBI
ChlSab1.1 Ensembl1264,372,763 - 64,450,973 (+)Ensembl
Vero_WHO_p1.0NW_02366603852,515,449 - 52,659,743 (+)NCBI
Ttc39b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473619,304,586 - 19,480,182 (-)NCBI

Position Markers
AW215585  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38483,220,578 - 83,220,661UniSTSGRCm38
MGSCv37482,866,482 - 82,866,565UniSTSGRCm37
Celera481,749,393 - 81,749,476UniSTS
Cytogenetic Map4C3UniSTS
Whitehead/MRC_RH41151.91UniSTS
AV103077  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38483,226,782 - 83,226,920UniSTSGRCm38
MGSCv37482,872,686 - 82,872,824UniSTSGRCm37
Celera481,755,591 - 81,755,729UniSTS
Cytogenetic Map4C3UniSTS
Whitehead/MRC_RH41164.5UniSTS
AI450603  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38483,220,557 - 83,220,661UniSTSGRCm38
MGSCv37482,866,461 - 82,866,565UniSTSGRCm37
Celera481,749,372 - 81,749,476UniSTS
Cytogenetic Map4C3UniSTS
Whitehead/MRC_RH41155.05UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117215009Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261689063979Mouse
1357645Lvrq9_mliver weight QTL 9 (mouse)Not determined41789261689063979Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261689063979Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261689063979Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108500000Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105299798Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105944663Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45018202584182171Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45018202584182171Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588592400Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993875068Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103400000Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45455335288553352Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45455335288553352Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094900000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45912901493129014Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46022704094227187Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46022704094227187Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46370128997701448Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46430422398304223Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465400000119000000Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46579984999799849Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46680000098700000Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466838893100839021Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466970208100970351Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468100000107300000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470148990104149227Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined472063832106063979Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined472063832106063979Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)472063832106063979Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474145650108145792Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474556462108556746Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474556462108556746Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474556462108556746Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474556462108556746Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474556462108556746Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474556462108556746Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474556462108556746Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474556462108556746Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474556462108556746Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474556462108556746Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474800000108500000Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475700000100300000Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476874870110875068Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined478069342112069538Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479477514113477630Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479477514113477630Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479477514113477630Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479477514113477630Mouse
4142203Lyr_mlymphoma resistance (mouse)Not determined8083420888850951Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48083423093224754Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481325754115325754Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482356158116356345Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483200000108500000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3134
Count of miRNA genes:913
Interacting mature miRNAs:1322
Transcripts:ENSMUST00000030205, ENSMUST00000048274, ENSMUST00000102823, ENSMUST00000143362, ENSMUST00000146519, ENSMUST00000148811, ENSMUST00000150522
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK007856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB289912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU515835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX571885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK780404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030205   ⟹   ENSMUSP00000030205
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,259,198 - 83,324,189 (-)Ensembl
RefSeq Acc Id: ENSMUST00000048274   ⟹   ENSMUSP00000040590
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,239,810 - 83,324,239 (-)Ensembl
RefSeq Acc Id: ENSMUST00000102823   ⟹   ENSMUSP00000099887
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,220,300 - 83,324,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143362
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,226,419 - 83,233,170 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146519
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,247,613 - 83,266,039 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148811   ⟹   ENSMUSP00000124490
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,259,329 - 83,279,407 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150522   ⟹   ENSMUSP00000124955
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl483,252,986 - 83,285,169 (-)Ensembl
RefSeq Acc Id: NM_027238   ⟹   NP_081514
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,138,538 - 83,242,426 (-)NCBI
GRCm38483,220,301 - 83,324,189 (-)NCBI
MGSCv37482,866,205 - 82,970,093 (-)RGD
Celera481,749,116 - 81,852,836 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538239   ⟹   XP_006538302
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,138,697 - 83,203,434 (-)NCBI
GRCm38483,220,300 - 83,285,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006538241   ⟹   XP_006538304
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,138,537 - 83,242,488 (-)NCBI
GRCm38483,220,300 - 83,324,309 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250101   ⟹   XP_011248403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,138,537 - 83,192,028 (-)NCBI
GRCm38483,220,300 - 83,273,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253766   ⟹   XP_030109626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,138,537 - 83,203,412 (-)NCBI
GRCm38483,220,300 - 83,284,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164405   ⟹   XP_036020298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39483,155,497 - 83,192,030 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_081514   ⟸   NM_027238
- UniProtKB: Q8BYY4 (UniProtKB/Swiss-Prot),   Q8CCY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538304   ⟸   XM_006538241
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006538302   ⟸   XM_006538239
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011248403   ⟸   XM_011250101
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030109626   ⟸   XM_030253766
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000124955   ⟸   ENSMUST00000150522
RefSeq Acc Id: ENSMUSP00000040590   ⟸   ENSMUST00000048274
RefSeq Acc Id: ENSMUSP00000124490   ⟸   ENSMUST00000148811
RefSeq Acc Id: ENSMUSP00000030205   ⟸   ENSMUST00000030205
RefSeq Acc Id: ENSMUSP00000099887   ⟸   ENSMUST00000102823
RefSeq Acc Id: XP_036020298   ⟸   XM_036164405
- Peptide Label: isoform X3

Promoters
RGD ID:6836579
Promoter ID:MM_KWN:38213
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Lung
Transcripts:OTTMUST00000000094
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,878,726 - 82,879,512 (-)MPROMDB
RGD ID:6836581
Promoter ID:MM_KWN:38214
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney
Transcripts:OTTMUST00000000095
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,911,786 - 82,912,286 (-)MPROMDB
RGD ID:6836580
Promoter ID:MM_KWN:38215
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000000096
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,924,961 - 82,925,461 (-)MPROMDB
RGD ID:6836582
Promoter ID:MM_KWN:38216
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000000097
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,930,706 - 82,931,206 (-)MPROMDB
RGD ID:6836577
Promoter ID:MM_KWN:38218
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000048274,   OTTMUST00000000091,   OTTMUST00000000093
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36482,969,921 - 82,970,421 (-)MPROMDB
RGD ID:6883738
Promoter ID:EPDNEW_M5320
Type:initiation region
Name:Ttc39b_1
Description:Mus musculus tetratricopeptide repeat domain 39B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38483,324,189 - 83,324,249EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917113 AgrOrtholog
Ensembl Genes ENSMUSG00000038172 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030205 UniProtKB/Swiss-Prot
  ENSMUSP00000040590 UniProtKB/Swiss-Prot
  ENSMUSP00000099887 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000124490 UniProtKB/TrEMBL
  ENSMUSP00000124955 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030205 UniProtKB/Swiss-Prot
  ENSMUST00000048274 UniProtKB/Swiss-Prot
  ENSMUST00000102823 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000148811 UniProtKB/TrEMBL
  ENSMUST00000150522 UniProtKB/TrEMBL
InterPro Iml2/TPR_39 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  TPR_repeat UniProtKB/Swiss-Prot
  TTC39B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917113 ENTREZGENE
NCBI Gene 69863 ENTREZGENE
PANTHER PTHR31859 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31859:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3808 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_6 UniProtKB/Swiss-Prot
PhenoGen Ttc39b PhenoGen
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt E0CX38_MOUSE UniProtKB/TrEMBL
  E0CY48_MOUSE UniProtKB/TrEMBL
  Q8BYY4 ENTREZGENE
  Q8CCY2 ENTREZGENE, UniProtKB/TrEMBL
  Q8VDY0_MOUSE UniProtKB/TrEMBL
  Q9D1V6_MOUSE UniProtKB/TrEMBL
  TT39B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RX73 UniProtKB/Swiss-Prot
  Q3V168 UniProtKB/Swiss-Prot
  Q8BX40 UniProtKB/Swiss-Prot
  Q9D8N8 UniProtKB/Swiss-Prot