Wdr1 (WD repeat domain 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Wdr1 (WD repeat domain 1) Mus musculus
Analyze
Symbol: Wdr1
Name: WD repeat domain 1
RGD ID: 1314034
MGI Page MGI
Description: Predicted to enable actin filament binding activity. Involved in several processes, including cytoskeleton organization; establishment of planar polarity of follicular epithelium; and platelet formation. Acts upstream of or within positive regulation of actin filament depolymerization; regulation of ventricular cardiac muscle cell membrane repolarization; and sarcomere organization. Located in myelin sheath. Is active in glutamatergic synapse. Is expressed in several structures, including early conceptus; embryo mesenchyme; genitourinary system; heart; and telencephalon. Orthologous to human WDR1 (WD repeat domain 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; actin-interacting protein 1; Aip1; D5Wsu185; D5Wsu185e; red; rede; WD repeat-containing protein 1; WD40 repeat protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,684,149 - 38,720,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,684,156 - 38,720,564 (-)EnsemblGRCm39 Ensembl
GRCm38538,526,806 - 38,562,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,526,813 - 38,563,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,918,052 - 38,952,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,815,062 - 38,849,844 (-)NCBIMGSCv36mm8
Celera535,975,532 - 36,010,314 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aminoglutethimide  (ISO)
amitrole  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
butan-1-ol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (EXP,ISO)
diuron  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
ethanol  (EXP)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furfural  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
isoflavones  (ISO)
ivermectin  (ISO)
lithocholic acid  (ISO)
methimazole  (ISO)
methotrexate  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
naphthalene  (EXP)
nickel atom  (ISO)
nitrates  (EXP)
Nonylphenol  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
quinoline  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichloroethene  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal erythropoiesis  (IAGP)
abnormal heart electrocardiography waveform feature  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal megakaryocyte morphology  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal myocardium layer morphology  (IAGP)
abnormal osteoclast physiology  (IAGP)
abnormal platelet alpha-granule morphology  (IAGP)
abnormal platelet dense granule morphology  (IAGP)
abnormal platelet morphology  (IAGP)
abnormal platelet shape  (IAGP)
abnormal T wave  (IAGP)
abnormal thrombopoiesis  (IAGP)
anemia  (IAGP)
cardiac hypertrophy  (IAGP)
decreased body size  (IAGP)
decreased heart left ventricle muscle contractility  (IAGP)
decreased heart rate  (IAGP)
ear inflammation  (IAGP)
embryonic lethality between implantation and somite formation, incomplete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IEA)
enlarged heart  (IAGP)
epidermal hyperplasia  (IAGP)
impaired neutrophil chemotaxis  (IAGP)
increased bleeding time  (IAGP)
increased heart weight  (IAGP)
increased inflammatory response  (IAGP)
increased mean platelet volume  (IAGP)
increased megakaryocyte cell number  (IAGP)
increased myocardial fiber size  (IAGP)
increased neutrophil cell number  (IAGP)
increased osteoclast cell number  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
prolonged P wave  (IAGP)
prolonged QT interval  (IAGP)
prolonged ST segment  (IAGP)
skin inflammation  (IAGP)
thrombocytopenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Non-syndromic vestibular disorder with otoconial agenesis in tilted/mergulhador mice caused by mutations in otopetrin 1. Hurle B, etal., Hum Mol Genet 2003 Apr 1;12(7):777-89.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10036186   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11597144   PMID:12477932   PMID:12520002   PMID:12955145   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17244351   PMID:17293856   PMID:17515402   PMID:17634366   PMID:18799693   PMID:19345177   PMID:19521500   PMID:20631256   PMID:21267068  
PMID:21873635   PMID:24194600   PMID:24457600   PMID:24840128   PMID:25020278   PMID:25897778   PMID:25915128   PMID:26008898   PMID:27627652   PMID:27994054   PMID:28671696   PMID:29654745  
PMID:29995657   PMID:30068389   PMID:30333137   PMID:30512154   PMID:30562941   PMID:30590446   PMID:30794912   PMID:31171447   PMID:32325033   PMID:32868491   PMID:34161765   PMID:36293380  
PMID:37019383   PMID:37142655   PMID:37442135   PMID:38355793  


Genomics

Comparative Map Data
Wdr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,684,149 - 38,720,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,684,156 - 38,720,564 (-)EnsemblGRCm39 Ensembl
GRCm38538,526,806 - 38,562,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,526,813 - 38,563,221 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,918,052 - 38,952,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,815,062 - 38,849,844 (-)NCBIMGSCv36mm8
Celera535,975,532 - 36,010,314 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.63NCBI
WDR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38410,074,339 - 10,116,799 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl410,068,089 - 10,116,972 (-)EnsemblGRCh38hg38GRCh38
GRCh37410,075,963 - 10,118,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3649,685,061 - 9,727,671 (-)NCBINCBI36Build 36hg18NCBI36
Build 3449,752,232 - 9,794,842NCBI
Celera410,558,329 - 10,600,940 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef49,409,667 - 9,452,321 (-)NCBIHuRef
CHM1_1410,074,119 - 10,116,732 (-)NCBICHM1_1
T2T-CHM13v2.0410,073,924 - 10,116,377 (-)NCBIT2T-CHM13v2.0
Wdr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,470,238 - 76,504,086 (+)NCBIGRCr8
mRatBN7.21472,258,032 - 72,291,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,257,956 - 72,291,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1476,699,706 - 76,733,442 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01477,940,571 - 77,974,307 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,380,625 - 74,414,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01476,990,014 - 77,023,739 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1476,989,919 - 77,023,726 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01476,974,171 - 77,007,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,489,828 - 77,524,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,522,469 - 77,526,067 (+)NCBI
Celera1471,210,337 - 71,244,077 (+)NCBICelera
Cytogenetic Map14q21NCBI
Wdr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555492,640,195 - 2,673,969 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555492,640,193 - 2,674,818 (+)NCBIChiLan1.0ChiLan1.0
WDR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2310,324,424 - 10,367,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1410,533,303 - 10,575,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v044,487,054 - 4,516,732 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.149,805,164 - 9,848,032 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl49,805,164 - 9,848,032 (-)Ensemblpanpan1.1panPan2
WDR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,305,731 - 69,348,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,305,731 - 69,348,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha371,858,411 - 71,900,857 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,061,466 - 70,103,927 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,061,281 - 70,104,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,335,607 - 69,378,040 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,500,585 - 69,543,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0369,883,812 - 69,926,328 (+)NCBIUU_Cfam_GSD_1.0
Wdr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528562,941,450 - 62,980,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647716,629,856 - 16,682,450 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647716,643,142 - 16,682,450 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,413,347 - 6,452,346 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,413,338 - 6,452,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WDR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12739,929,749 - 39,973,892 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2739,929,787 - 39,974,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604786,717,645 - 86,762,071 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,090,717 - 21,123,259 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,090,599 - 21,124,107 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr1
1687 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:433
Count of miRNA genes:291
Interacting mature miRNAs:334
Transcripts:ENSMUST00000005234
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53695734445457342Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53695734445457342Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53695734445457342Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53695734445457342Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53695734445457342Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53695734445457342Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53695734445457342Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53695734445457342Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53695734445457342Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53695734445457342Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse

Markers in Region
RH128182  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38538,526,889 - 38,527,085UniSTSGRCm38
MGSCv37538,918,128 - 38,918,324UniSTSGRCm37
Celera535,975,608 - 35,975,804UniSTS
Cytogenetic Map5B3UniSTS
cM Map524.0UniSTS
RH124799  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38538,526,917 - 38,527,141UniSTSGRCm38
MGSCv37538,918,156 - 38,918,380UniSTSGRCm37
Celera535,975,636 - 35,975,860UniSTS
Cytogenetic Map5B3UniSTS
cM Map524.0UniSTS
D5Wsu185e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38538,526,955 - 38,527,159UniSTSGRCm38
MGSCv37538,918,194 - 38,918,398UniSTSGRCm37
Celera535,975,674 - 35,975,878UniSTS
Cytogenetic Map5B3UniSTS
cM Map521.0UniSTS
cM Map524.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC171271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF020055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000005234   ⟹   ENSMUSP00000005234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,684,156 - 38,719,149 (-)Ensembl
GRCm38.p6 Ensembl538,526,813 - 38,561,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,684,923 - 38,687,469 (-)Ensembl
GRCm38.p6 Ensembl538,527,580 - 38,530,126 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,685,064 - 38,687,357 (-)Ensembl
GRCm38.p6 Ensembl538,527,721 - 38,530,014 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,697,529 - 38,718,893 (-)Ensembl
GRCm38.p6 Ensembl538,540,186 - 38,561,550 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201260   ⟹   ENSMUSP00000143937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,684,930 - 38,718,978 (-)Ensembl
GRCm38.p6 Ensembl538,527,587 - 38,561,635 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,718,252 - 38,718,918 (-)Ensembl
GRCm38.p6 Ensembl538,560,909 - 38,561,575 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,708,565 - 38,719,149 (-)Ensembl
GRCm38.p6 Ensembl538,551,222 - 38,561,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000201538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,686,538 - 38,687,193 (-)Ensembl
GRCm38.p6 Ensembl538,529,195 - 38,529,850 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,714,978 - 38,718,886 (-)Ensembl
GRCm38.p6 Ensembl538,557,635 - 38,561,543 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,687,311 - 38,689,339 (-)Ensembl
GRCm38.p6 Ensembl538,529,968 - 38,531,996 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,703,018 - 38,720,564 (-)Ensembl
GRCm38.p6 Ensembl538,545,675 - 38,563,221 (-)Ensembl
RefSeq Acc Id: NM_011715   ⟹   NP_035845
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,684,149 - 38,719,042 (-)NCBI
GRCm38538,526,806 - 38,561,699 (-)NCBI
MGSCv37538,918,052 - 38,952,834 (-)RGD
Celera535,975,532 - 36,010,314 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503863   ⟹   XP_006503926
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,687,104 - 38,720,265 (-)NCBI
GRCm38538,529,760 - 38,562,922 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035845   ⟸   NM_011715
- UniProtKB: O88342 (UniProtKB/Swiss-Prot),   Q3TJY2 (UniProtKB/TrEMBL),   Q9DBM8 (UniProtKB/TrEMBL),   Q9DC08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503926   ⟸   XM_006503863
- Peptide Label: isoform X1
- UniProtKB: Q3TE06 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000143937   ⟸   ENSMUST00000201260
Ensembl Acc Id: ENSMUSP00000005234   ⟸   ENSMUST00000005234

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88342-F1-model_v2 AlphaFold O88342 1-606 view protein structure

Promoters
RGD ID:6886594
Promoter ID:EPDNEW_M6748
Type:initiation region
Name:Wdr1_1
Description:Mus musculus WD repeat domain 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38538,561,564 - 38,561,624EPDNEW
RGD ID:6838634
Promoter ID:MM_KWN:42120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000005234,   NM_011715,   UC008XGT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36538,952,741 - 38,953,262 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1337100 AgrOrtholog
Ensembl Genes ENSMUSG00000005103 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005234 ENTREZGENE
  ENSMUST00000005234.13 UniProtKB/Swiss-Prot
  ENSMUST00000201260.4 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N2O_reductase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report mmu:22388 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1337100 ENTREZGENE
NCBI Gene 22388 ENTREZGENE
PANTHER WD REPEAT-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD-REPEATCONTAINING PROTEIN WDR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr1 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50974 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  TolB, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YU05_MOUSE UniProtKB/TrEMBL
  O88342 ENTREZGENE
  Q3TE06 ENTREZGENE, UniProtKB/TrEMBL
  Q3TJY2 ENTREZGENE, UniProtKB/TrEMBL
  Q3TNK2_MOUSE UniProtKB/TrEMBL
  Q3U136_MOUSE UniProtKB/TrEMBL
  Q80ZI9_MOUSE UniProtKB/TrEMBL
  Q9DBM8 ENTREZGENE, UniProtKB/TrEMBL
  Q9DC08 ENTREZGENE, UniProtKB/TrEMBL
  WDR1_MOUSE UniProtKB/Swiss-Prot