Cfap100 (cilia and flagella associated protein 100) - Rat Genome Database
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Gene: Cfap100 (cilia and flagella associated protein 100) Mus musculus
Analyze
Symbol: Cfap100
Name: cilia and flagella associated protein 100
RGD ID: 1314000
MGI Page MGI
Description: Is expressed in central nervous system and nose. Orthologous to human CFAP100 (cilia and flagella associated protein 100); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW048498; C030041G11Rik; C230069K22Rik; Ccdc37; cilia- and flagella-associated protein 100; coiled-coil domain containing 37; coiled-coil domain-containing protein 37
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,380,713 - 90,412,379 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,380,461 - 90,405,779 (-)Ensembl
GRCm38690,403,731 - 90,429,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,403,479 - 90,428,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,353,730 - 90,378,474 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,369,242 - 90,394,291 (-)NCBImm8
Celera692,297,632 - 92,323,771 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15010206   PMID:15489334   PMID:15953540   PMID:16141072  
PMID:16141073   PMID:21677750   PMID:32325033  


Genomics

Comparative Map Data
Cfap100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,380,713 - 90,412,379 (-)NCBIGRCm39mm39
GRCm39 Ensembl690,380,461 - 90,405,779 (-)Ensembl
GRCm38690,403,731 - 90,429,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,403,479 - 90,428,797 (-)EnsemblGRCm38mm10GRCm38
MGSCv37690,353,730 - 90,378,474 (-)NCBIGRCm37mm9NCBIm37
MGSCv36690,369,242 - 90,394,291 (-)NCBImm8
Celera692,297,632 - 92,323,771 (-)NCBICelera
Cytogenetic Map6D1NCBI
CFAP100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3126,394,909 - 126,436,556 (+)EnsemblGRCh38hg38GRCh38
GRCh383126,394,893 - 126,436,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373126,113,752 - 126,155,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,596,472 - 127,638,088 (+)NCBINCBI36hg18NCBI36
Celera3124,538,607 - 124,580,221 (+)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3123,494,475 - 123,535,869 (+)NCBIHuRef
CHM1_13126,076,803 - 126,118,431 (+)NCBICHM1_1
Cfap100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24122,914,693 - 122,938,994 (-)NCBI
Rnor_6.0 Ensembl4122,314,458 - 122,337,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04122,314,462 - 122,338,862 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04186,855,472 - 186,880,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44124,661,805 - 124,685,543 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14124,906,287 - 124,930,962 (-)NCBI
Celera4111,838,887 - 111,863,204 (-)NCBICelera
Cytogenetic Map4q34NCBI
Cfap100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542121,652,750 - 21,685,770 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542121,652,655 - 21,685,866 (+)NCBIChiLan1.0ChiLan1.0
CFAP100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13130,761,495 - 130,801,851 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,761,923 - 130,801,851 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03123,444,962 - 123,486,188 (+)NCBIMhudiblu_PPA_v0panPan3
CFAP100
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl20587,508 - 619,545 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.120565,571 - 619,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cfap100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936898542,581 - 553,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl753,909,425 - 53,949,630 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1753,909,353 - 53,949,648 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2758,792,627 - 58,820,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP100
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,581,573 - 54,622,842 (-)NCBI
ChlSab1.1 Ensembl2254,581,104 - 54,622,970 (-)Ensembl
Cfap100
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624773149,957 - 207,015 (-)NCBI

Position Markers
AW048498  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38690,403,837 - 90,403,966UniSTSGRCm38
MGSCv37690,353,831 - 90,353,960UniSTSGRCm37
Celera692,297,733 - 92,297,862UniSTS
Cytogenetic Map6D1UniSTS
Whitehead/MRC_RH6932.71UniSTS
Ccdc37  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1104
Count of miRNA genes:521
Interacting mature miRNAs:617
Transcripts:ENSMUST00000062750, ENSMUST00000127508, ENSMUST00000128124, ENSMUST00000129666, ENSMUST00000134224, ENSMUST00000135757, ENSMUST00000153843, ENSMUST00000165673
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000062750   ⟹   ENSMUSP00000059976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,403,736 - 90,428,432 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127508   ⟹   ENSMUSP00000145109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,421,147 - 90,428,435 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128124
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,427,896 - 90,428,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134224   ⟹   ENSMUSP00000145247
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,420,934 - 90,428,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135757   ⟹   ENSMUSP00000144829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,426,484 - 90,428,395 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153843   ⟹   ENSMUSP00000144969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,403,479 - 90,428,787 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165673   ⟹   ENSMUSP00000126515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl690,403,738 - 90,428,413 (-)Ensembl
RefSeq Acc Id: NM_173775   ⟹   NP_776136
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,718 - 90,405,462 (-)NCBI
GRCm38690,403,736 - 90,428,480 (-)NCBI
MGSCv37690,353,730 - 90,378,474 (-)RGD
Celera692,297,632 - 92,323,771 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506095   ⟹   XP_006506158
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241338   ⟹   XP_011239640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,736 - 90,429,768 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241339   ⟹   XP_011239641
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241340   ⟹   XP_011239642
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241341   ⟹   XP_011239643
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241342   ⟹   XP_011239644
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241348   ⟹   XP_011239650
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,394,681 (-)NCBI
GRCm38690,403,731 - 90,417,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321584   ⟹   XP_017177073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255372   ⟹   XP_030111232
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255373   ⟹   XP_030111233
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255374   ⟹   XP_030111234
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255375   ⟹   XP_030111235
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255376   ⟹   XP_030111236
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255377   ⟹   XP_030111237
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255378   ⟹   XP_030111238
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255384   ⟹   XP_030111244
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166112   ⟹   XP_036022005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
RefSeq Acc Id: XM_036166113   ⟹   XP_036022006
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
RefSeq Acc Id: XM_036166114   ⟹   XP_036022007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,394,675 (-)NCBI
RefSeq Acc Id: XM_036166115   ⟹   XP_036022008
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
RefSeq Acc Id: XM_036166116   ⟹   XP_036022009
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
RefSeq Acc Id: XM_036166117   ⟹   XP_036022010
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,404,526 (-)NCBI
RefSeq Acc Id: XM_036166118   ⟹   XP_036022011
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,394,675 (-)NCBI
RefSeq Acc Id: XR_001785130
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785131
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785132
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003956196
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39690,380,713 - 90,412,379 (-)NCBI
GRCm38690,403,731 - 90,429,258 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_776136 (Get FASTA)   NCBI Sequence Viewer  
  XP_006506158 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239640 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239641 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239642 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239643 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239644 (Get FASTA)   NCBI Sequence Viewer  
  XP_011239650 (Get FASTA)   NCBI Sequence Viewer  
  XP_017177073 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111232 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111233 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111234 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111235 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111236 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111237 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111238 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111244 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022005 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022006 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022007 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022008 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022009 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022010 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022011 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH47211 (Get FASTA)   NCBI Sequence Viewer  
  AAH79632 (Get FASTA)   NCBI Sequence Viewer  
  BAC33459 (Get FASTA)   NCBI Sequence Viewer  
  EDK99287 (Get FASTA)   NCBI Sequence Viewer  
  Q80VN0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_776136   ⟸   NM_173775
- UniProtKB: Q80VN0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506158   ⟸   XM_006506095
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011239640   ⟸   XM_011241338
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011239641   ⟸   XM_011241339
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011239642   ⟸   XM_011241340
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011239643   ⟸   XM_011241341
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011239644   ⟸   XM_011241342
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011239650   ⟸   XM_011241348
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017177073   ⟸   XM_017321584
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030111236   ⟸   XM_030255376
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030111235   ⟸   XM_030255375
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030111237   ⟸   XM_030255377
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030111233   ⟸   XM_030255373
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030111234   ⟸   XM_030255374
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030111238   ⟸   XM_030255378
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030111232   ⟸   XM_030255372
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030111244   ⟸   XM_030255384
- Peptide Label: isoform X10
RefSeq Acc Id: ENSMUSP00000145109   ⟸   ENSMUST00000127508
RefSeq Acc Id: ENSMUSP00000126515   ⟸   ENSMUST00000165673
RefSeq Acc Id: ENSMUSP00000059976   ⟸   ENSMUST00000062750
RefSeq Acc Id: ENSMUSP00000144829   ⟸   ENSMUST00000135757
RefSeq Acc Id: ENSMUSP00000145247   ⟸   ENSMUST00000134224
RefSeq Acc Id: ENSMUSP00000144969   ⟸   ENSMUST00000153843
RefSeq Acc Id: XP_036022009   ⟸   XM_036166116
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036022008   ⟸   XM_036166115
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036022006   ⟸   XM_036166113
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036022005   ⟸   XM_036166112
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036022010   ⟸   XM_036166117
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036022011   ⟸   XM_036166118
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036022007   ⟸   XM_036166114
- Peptide Label: isoform X7
Protein Domains
DUF4200

Promoters
RGD ID:6839056
Promoter ID:MM_KWN:46880
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000073629
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36690,377,651 - 90,378,151 (-)MPROMDB
RGD ID:6839057
Promoter ID:MM_KWN:46881
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   MEF_B6
Transcripts:NM_173775,   OTTMUST00000073624,   OTTMUST00000073625,   OTTMUST00000073626,   OTTMUST00000073627,   OTTMUST00000073628,   OTTMUST00000073630,   UC009CXH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36690,378,386 - 90,378,886 (-)MPROMDB
RGD ID:6890412
Promoter ID:EPDNEW_M8657
Type:initiation region
Name:Cfap100_1
Description:Mus musculus cilia and flagella associated protein 100 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38690,428,449 - 90,428,509EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2141635 AgrOrtholog
Ensembl Genes ENSMUSG00000048794 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059976 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000126515 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144829 UniProtKB/TrEMBL
  ENSMUSP00000144969 UniProtKB/TrEMBL
  ENSMUSP00000145109 UniProtKB/TrEMBL
  ENSMUSP00000145247 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062750 UniProtKB/TrEMBL
  ENSMUST00000127508 UniProtKB/TrEMBL
  ENSMUST00000134224 UniProtKB/TrEMBL
  ENSMUST00000135757 UniProtKB/TrEMBL
  ENSMUST00000153843 UniProtKB/TrEMBL
  ENSMUST00000165673 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro DUF4200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:243538 UniProtKB/Swiss-Prot
MGD MGI:2141635 ENTREZGENE
NCBI Gene 243538 ENTREZGENE
Pfam DUF4200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cfap100 PhenoGen
UniProt A0A0N4SUU7_MOUSE UniProtKB/TrEMBL
  A0A0N4SV62_MOUSE UniProtKB/TrEMBL
  A0A0N4SVH7_MOUSE UniProtKB/TrEMBL
  A0A171EBL0_MOUSE UniProtKB/TrEMBL
  CP100_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8C803_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9PYA2 UniProtKB/Swiss-Prot
  Q6AXD6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 Cfap100  cilia and flagella associated protein 100  Ccdc37  coiled-coil domain containing 37  Symbol and/or name change 5135510 APPROVED