Phf12 (PHD finger protein 12) - Rat Genome Database
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Gene: Phf12 (PHD finger protein 12) Mus musculus
Analyze
Symbol: Phf12
Name: PHD finger protein 12
RGD ID: 1313936
MGI Page MGI
Description: Exhibits transcription corepressor binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to Sin3 complex and transcription repressor complex. Is expressed in several structures, including branchial arch; genitourinary system; limb; liver; and maxillary process. Orthologous to human PHF12 (PHD finger protein 12); INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2410142K10Rik; F630045O13; mKIAA1523; PF; PF1; PHD factor 1; PHD zinc finger transcription factor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,873,515 - 77,921,365 (+)NCBIGRCm39mm39
GRCm381177,982,733 - 78,030,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,982,754 - 78,030,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,796,318 - 77,844,038 (+)NCBIGRCm37mm9NCBIm37
MGSCv361177,799,408 - 77,846,731 (+)NCBImm8
Celera1185,482,637 - 85,530,162 (+)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11390640   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15033168   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20059953   PMID:21041482   PMID:21779533   PMID:21873635   PMID:22244764   PMID:24146773   PMID:27956701  


Genomics

Comparative Map Data
Phf12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,873,515 - 77,921,365 (+)NCBIGRCm39mm39
GRCm381177,982,733 - 78,030,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,982,754 - 78,030,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371177,796,318 - 77,844,038 (+)NCBIGRCm37mm9NCBIm37
MGSCv361177,799,408 - 77,846,731 (+)NCBImm8
Celera1185,482,637 - 85,530,162 (+)NCBICelera
Cytogenetic Map11B5NCBI
PHF12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1728,905,250 - 28,951,771 (-)EnsemblGRCh38hg38GRCh38
GRCh381728,905,250 - 28,951,518 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371727,232,268 - 27,278,536 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371727,232,264 - 27,278,622 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,256,397 - 24,302,634 (-)NCBINCBI36hg18NCBI36
Build 341724,263,287 - 24,302,634NCBI
Celera1724,091,687 - 24,137,902 (-)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1723,440,487 - 23,486,670 (-)NCBIHuRef
CHM1_11727,294,832 - 27,341,048 (-)NCBICHM1_1
Phf12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21062,871,309 - 62,919,026 (+)NCBI
Rnor_6.0 Ensembl1064,815,462 - 64,862,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01064,815,462 - 64,863,514 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01066,762,563 - 66,810,441 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,024,531 - 64,074,458 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11064,038,176 - 64,088,085 (+)NCBI
Celera1061,850,571 - 61,897,329 (+)NCBICelera
Cytogenetic Map10q24-q25NCBI
Phf12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,223,808 - 4,268,640 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,223,803 - 4,268,640 (+)NCBIChiLan1.0ChiLan1.0
PHF12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,331,701 - 28,378,119 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,331,701 - 28,377,943 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01727,822,649 - 27,868,703 (+)NCBIMhudiblu_PPA_v0panPan3
PHF12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl943,071,984 - 43,116,307 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1943,076,171 - 43,116,446 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Phf12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365385,097,656 - 5,141,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,130,071 - 45,174,541 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,129,864 - 45,174,755 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,093,452 - 47,137,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF12
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,666,336 - 22,713,633 (-)NCBI
ChlSab1.1 Ensembl1622,665,702 - 22,713,191 (-)Ensembl
Phf12
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247861,472,111 - 1,517,916 (-)NCBI

Position Markers
RH124536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,030,125 - 78,030,383UniSTSGRCm38
MGSCv371177,843,627 - 77,843,885UniSTSGRCm37
Celera1185,529,751 - 85,530,009UniSTS
Cytogenetic Map11B5UniSTS
MARC_13669-13670:1002900020:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,025,038 - 78,025,932UniSTSGRCm38
MGSCv371177,838,540 - 77,839,434UniSTSGRCm37
Celera1185,524,664 - 85,525,558UniSTS
Cytogenetic Map11B5UniSTS
D11Bhm45  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381177,983,984 - 77,984,086UniSTSGRCm38
MGSCv371177,797,486 - 77,797,588UniSTSGRCm37
Celera1185,483,803 - 85,483,905UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.86UniSTS
D11Bhm46  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,025,593 - 78,025,708UniSTSGRCm38
MGSCv371177,839,095 - 77,839,210UniSTSGRCm37
Celera1185,525,219 - 85,525,334UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.88UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1229
Count of miRNA genes:587
Interacting mature miRNAs:696
Transcripts:ENSMUST00000049167, ENSMUST00000108360, ENSMUST00000123662, ENSMUST00000125079, ENSMUST00000131680, ENSMUST00000141620, ENSMUST00000153428, ENSMUST00000153747
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_174852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK010807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049167   ⟹   ENSMUSP00000044990
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,982,802 - 78,030,539 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108360   ⟹   ENSMUSP00000103997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1177,982,754 - 78,026,214 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123662   ⟹   ENSMUSP00000131016
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,023,719 - 78,026,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125079
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,028,110 - 78,029,577 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131680   ⟹   ENSMUSP00000127391
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,023,696 - 78,028,847 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,023,595 - 78,025,961 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153428   ⟹   ENSMUSP00000119390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,023,381 - 78,026,192 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153747   ⟹   ENSMUSP00000130741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,023,629 - 78,026,182 (+)Ensembl
RefSeq Acc Id: NM_174852   ⟹   NP_777277
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,642 - 77,921,362 (+)NCBI
GRCm381177,982,816 - 78,030,536 (+)NCBI
MGSCv371177,796,318 - 77,844,038 (+)RGD
Celera1185,482,637 - 85,530,162 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533400   ⟹   XP_006533463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,540 - 77,921,365 (+)NCBI
GRCm381177,982,733 - 78,030,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314564   ⟹   XP_017170053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,879,199 - 77,921,365 (+)NCBI
GRCm381177,988,365 - 78,030,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246034   ⟹   XP_030101894
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,575 - 77,921,365 (+)NCBI
GRCm381177,982,749 - 78,030,539 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156716   ⟹   XP_036012609
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,580 - 77,921,365 (+)NCBI
RefSeq Acc Id: XR_003949453
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,515 - 77,920,350 (+)NCBI
GRCm381177,982,733 - 78,029,524 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936972
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,580 - 77,921,365 (+)NCBI
RefSeq Acc Id: XR_004936973
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,875,696 - 77,921,365 (+)NCBI
RefSeq Acc Id: XR_388469
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391177,873,515 - 77,921,365 (+)NCBI
GRCm381177,982,733 - 78,030,539 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_777277   ⟸   NM_174852
- UniProtKB: Q5SPL2 (UniProtKB/Swiss-Prot),   Q3U2C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533463   ⟸   XM_006533400
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170053   ⟸   XM_017314564
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030101894   ⟸   XM_030246034
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000103997   ⟸   ENSMUST00000108360
RefSeq Acc Id: ENSMUSP00000044990   ⟸   ENSMUST00000049167
RefSeq Acc Id: ENSMUSP00000127391   ⟸   ENSMUST00000131680
RefSeq Acc Id: ENSMUSP00000130741   ⟸   ENSMUST00000153747
RefSeq Acc Id: ENSMUSP00000119390   ⟸   ENSMUST00000153428
RefSeq Acc Id: ENSMUSP00000131016   ⟸   ENSMUST00000123662
RefSeq Acc Id: XP_036012609   ⟸   XM_036156716
- Peptide Label: isoform X2
Protein Domains
FHA   PHD-type

Promoters
RGD ID:6821564
Promoter ID:MM_KWN:8651
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108360,   OTTMUST00000000201,   UC007KHQ.1,   UC007KHR.1,   UC007KHS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,795,376 - 77,796,342 (+)MPROMDB
RGD ID:6821541
Promoter ID:MM_KWN:8652
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:ENSMUST00000108359
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,829,506 - 77,830,006 (+)MPROMDB
RGD ID:6821543
Promoter ID:MM_KWN:8653
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000000203,   OTTMUST00000000204,   OTTMUST00000000205,   OTTMUST00000000206,   OTTMUST00000000207
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,836,366 - 77,836,957 (+)MPROMDB
RGD ID:6821544
Promoter ID:MM_KWN:8654
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Lung
Transcripts:OTTMUST00000000208
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,841,694 - 77,842,194 (+)MPROMDB
RGD ID:8675664
Promoter ID:EPDNEW_M15862
Type:initiation region
Name:Phf12_1
Description:Mus musculus PHD finger protein 12 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381177,982,816 - 77,982,876EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924057 AgrOrtholog
Ensembl Genes ENSMUSG00000037791 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000044990 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000103997 UniProtKB/Swiss-Prot
  ENSMUSP00000119390 UniProtKB/TrEMBL
  ENSMUSP00000127391 UniProtKB/TrEMBL
  ENSMUSP00000130741 UniProtKB/TrEMBL
  ENSMUSP00000131016 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049167 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108360 UniProtKB/Swiss-Prot
  ENSMUST00000123662 UniProtKB/TrEMBL
  ENSMUST00000131680 UniProtKB/TrEMBL
  ENSMUST00000153428 UniProtKB/TrEMBL
  ENSMUST00000153747 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1860 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Bromodomain-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHF12_MRG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHF12_MRG-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:268448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924057 ENTREZGENE
NCBI Gene 268448 ENTREZGENE
PANTHER PTHR46309 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHF12_MRG_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phf12 PhenoGen
PROSITE FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6U3I4_MOUSE UniProtKB/TrEMBL
  F7AKS4_MOUSE UniProtKB/TrEMBL
  F7AXU7_MOUSE UniProtKB/TrEMBL
  PHF12_MOUSE UniProtKB/Swiss-Prot
  Q3TDH9_MOUSE UniProtKB/TrEMBL
  Q3TDJ9_MOUSE UniProtKB/TrEMBL
  Q3U2C9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UR51_MOUSE UniProtKB/TrEMBL
  Q3V456_MOUSE UniProtKB/TrEMBL
  Q5SPL2 ENTREZGENE
  Q5SS87_MOUSE UniProtKB/TrEMBL
  Q8CHY4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q5SPL3 UniProtKB/Swiss-Prot
  Q6ZPN8 UniProtKB/Swiss-Prot
  Q80W50 UniProtKB/Swiss-Prot