TUBGCP3 (tubulin gamma complex component 3) - Rat Genome Database

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Gene: TUBGCP3 (tubulin gamma complex component 3) Homo sapiens
Analyze
Symbol: TUBGCP3
Name: tubulin gamma complex component 3 (Ensembl:tubulin gamma complex associated protein 3)
RGD ID: 1313927
HGNC Page HGNC:18598
Description: Enables gamma-tubulin binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Located in cytoplasm and microtubule cytoskeleton.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 104p; ALP6; gamma-ring complex protein 104 kDa; gamma-tubulin complex component 3; GCP-3; GCP3; Grip104; h104p; hGCP3; hGrip104; hSpc98; SPBC98; Spc98; Spc98p; spindle pole body protein Spc98 homolog; tubulin gamma complex associated protein 3; tubulin, gamma complex associated protein 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813112,485,011 - 112,605,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13112,485,011 - 112,588,205 (-)EnsemblGRCh38hg38GRCh38
GRCh3713113,139,325 - 113,242,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,187,326 - 112,290,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413112,187,328 - 112,290,482NCBI
Celera1393,964,643 - 94,067,798 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1393,580,931 - 93,683,836 (-)NCBIHuRef
CHM1_113113,105,134 - 113,211,498 (-)NCBICHM1_1
T2T-CHM13v2.013111,732,118 - 111,854,172 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7876350   PMID:8838651   PMID:9138452   PMID:9566967   PMID:9566969   PMID:11694571   PMID:11956313   PMID:12221128   PMID:12477932   PMID:15057823   PMID:15342556   PMID:15489334  
PMID:17959831   PMID:19299467   PMID:19322201   PMID:19531213   PMID:19615732   PMID:19786618   PMID:19946888   PMID:20360068   PMID:20379614   PMID:20467437   PMID:20858683   PMID:21135143  
PMID:21399614   PMID:21873635   PMID:21900206   PMID:22658674   PMID:23414517   PMID:23443559   PMID:23886939   PMID:24163370   PMID:24509916   PMID:24981860   PMID:25921289   PMID:26079448  
PMID:26186194   PMID:26344197   PMID:26496610   PMID:26638075   PMID:26673895   PMID:26687479   PMID:26760575   PMID:26972000   PMID:28514442   PMID:28561026   PMID:28700943   PMID:28712289  
PMID:28851027   PMID:29162697   PMID:29467282   PMID:29568061   PMID:29778605   PMID:30033366   PMID:30737378   PMID:31091453   PMID:31240132   PMID:31753913   PMID:31980649   PMID:32353859  
PMID:32707033   PMID:33060197   PMID:33239621   PMID:33462405   PMID:33766124   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34373451   PMID:34515875   PMID:35241646   PMID:35256949  
PMID:35271311   PMID:35439318   PMID:35509820   PMID:35563538   PMID:35850772   PMID:35944360   PMID:36114006   PMID:36180527   PMID:36215168   PMID:36244648   PMID:37689310   PMID:37827155  
PMID:38113892  


Genomics

Comparative Map Data
TUBGCP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813112,485,011 - 112,605,630 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13112,485,011 - 112,588,205 (-)EnsemblGRCh38hg38GRCh38
GRCh3713113,139,325 - 113,242,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613112,187,326 - 112,290,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413112,187,328 - 112,290,482NCBI
Celera1393,964,643 - 94,067,798 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1393,580,931 - 93,683,836 (-)NCBIHuRef
CHM1_113113,105,134 - 113,211,498 (-)NCBICHM1_1
T2T-CHM13v2.013111,732,118 - 111,854,172 (-)NCBIT2T-CHM13v2.0
Tubgcp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39812,664,277 - 12,722,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl812,664,277 - 12,722,248 (-)EnsemblGRCm39 Ensembl
GRCm38812,614,277 - 12,672,854 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl812,614,277 - 12,672,248 (-)EnsemblGRCm38mm10GRCm38
MGSCv37812,614,277 - 12,672,100 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36812,614,254 - 12,672,077 (-)NCBIMGSCv36mm8
Celera812,782,152 - 12,839,981 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Tubgcp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81683,553,950 - 83,614,626 (+)NCBIGRCr8
mRatBN7.21676,851,859 - 76,912,499 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,851,810 - 76,912,499 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1682,132,372 - 82,193,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01685,584,963 - 85,645,615 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,835,194 - 80,895,627 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01682,184,362 - 82,245,041 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1682,184,387 - 82,245,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01681,670,460 - 81,729,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,709,041 - 81,769,680 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11681,694,877 - 81,755,530 (+)NCBI
Celera1674,657,945 - 74,716,595 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Tubgcp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404969,027 - 1,031,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955404969,027 - 1,027,229 (+)NCBIChiLan1.0ChiLan1.0
TUBGCP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214113,976,107 - 114,079,938 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113112,661,492 - 112,764,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01393,614,417 - 93,716,589 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113112,702,519 - 112,801,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13112,702,519 - 112,801,429 (-)Ensemblpanpan1.1panPan2
TUBGCP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,161,219 - 60,237,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,161,639 - 60,237,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2259,874,057 - 59,950,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02260,788,598 - 60,865,382 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2260,788,636 - 60,865,466 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,287,612 - 60,364,305 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,283,378 - 60,360,083 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,317,624 - 60,394,386 (-)NCBIUU_Cfam_GSD_1.0
Tubgcp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945194,986,745 - 195,055,677 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472896,488 - 965,915 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472896,513 - 965,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TUBGCP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,190,729 - 78,232,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,190,725 - 78,232,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,779,310 - 85,820,852 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TUBGCP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1390,533,743 - 90,627,963 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl390,534,728 - 90,627,859 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604647,452,720 - 47,547,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tubgcp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247931,066,697 - 1,123,038 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247931,066,746 - 1,123,944 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TUBGCP3
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q33.3-34(chr13:107918132-114327173)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050921]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050921]|See cases [RCV000050921] Chr13:107918132..114327173 [GRCh38]
Chr13:108570480..115092648 [GRCh37]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:107918132-114327173)x1 copy number loss See cases [RCV000050922] Chr13:107918132..114327173 [GRCh38]
Chr13:108570480..115092648 [GRCh37]
Chr13:107368481..114110750 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:108743171-114327173)x1 copy number loss See cases [RCV000050540] Chr13:108743171..114327173 [GRCh38]
Chr13:109395519..115085141 [GRCh37]
Chr13:108193520..114110750 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:104461586-114327173)x1 copy number loss See cases [RCV000051448] Chr13:104461586..114327173 [GRCh38]
Chr13:105113936..115085141 [GRCh37]
Chr13:103911937..114110750 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:104698508-114327173)x1 copy number loss See cases [RCV000051449] Chr13:104698508..114327173 [GRCh38]
Chr13:105350859..115085141 [GRCh37]
Chr13:104148860..114110750 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:105571072-114327314)x1 copy number loss See cases [RCV000051450] Chr13:105571072..114327314 [GRCh38]
Chr13:106223421..115085141 [GRCh37]
Chr13:105021422..114110891 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:107168805-114327314)x1 copy number loss See cases [RCV000051452] Chr13:107168805..114327314 [GRCh38]
Chr13:107821153..115085141 [GRCh37]
Chr13:106619154..114110891 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q34(chr13:111541166-113671678)x1 copy number loss See cases [RCV000051453] Chr13:111541166..113671678 [GRCh38]
Chr13:112193513..114325993 [GRCh37]
Chr13:110991514..113648401 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:82581008-114327173)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051380]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051380]|See cases [RCV000051380] Chr13:82581008..114327173 [GRCh38]
Chr13:83155143..115085141 [GRCh37]
Chr13:82053144..114110750 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q31.3-34(chr13:91366227-114327314)x1 copy number loss See cases [RCV000051418] Chr13:91366227..114327314 [GRCh38]
Chr13:92018481..115085141 [GRCh37]
Chr13:90816482..114110891 [NCBI36]
Chr13:13q31.3-34
pathogenic
GRCh38/hg38 13q32.3-34(chr13:101049614-114327314)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051421]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051421]|See cases [RCV000051421] Chr13:101049614..114327314 [GRCh38]
Chr13:101587036..115085141 [GRCh37]
Chr13:100385037..114110891 [NCBI36]
Chr13:13q32.3-34
pathogenic
GRCh38/hg38 13q33.1-34(chr13:101537045-114327173)x1 copy number loss See cases [RCV000051422] Chr13:101537045..114327173 [GRCh38]
Chr13:102189396..115085141 [GRCh37]
Chr13:100987397..114110750 [NCBI36]
Chr13:13q33.1-34
pathogenic
GRCh38/hg38 13q33.1-34(chr13:102114025-114327173)x1 copy number loss See cases [RCV000051423] Chr13:102114025..114327173 [GRCh38]
Chr13:102766375..115085141 [GRCh37]
Chr13:101564376..114110750 [NCBI36]
Chr13:13q33.1-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:106157165-114327173)x1 copy number loss See cases [RCV000051180] Chr13:106157165..114327173 [GRCh38]
Chr13:106809514..115085141 [GRCh37]
Chr13:105607515..114110750 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q13.2-34(chr13:33528097-114327173)x3 copy number gain See cases [RCV000053759] Chr13:33528097..114327173 [GRCh38]
Chr13:34102234..115085141 [GRCh37]
Chr13:33000234..114110750 [NCBI36]
Chr13:13q13.2-34
pathogenic
GRCh38/hg38 13q32.3-34(chr13:99472316-114293545)x3 copy number gain See cases [RCV000053792] Chr13:99472316..114293545 [GRCh38]
Chr13:100124570..115059020 [GRCh37]
Chr13:98922571..114077122 [NCBI36]
Chr13:13q32.3-34
pathogenic
GRCh38/hg38 13q14.11-34(chr13:43219125-114327314)x3 copy number gain See cases [RCV000053762] Chr13:43219125..114327314 [GRCh38]
Chr13:43793261..115085141 [GRCh37]
Chr13:42691261..114110891 [NCBI36]
Chr13:13q14.11-34
pathogenic
GRCh38/hg38 13q32.3-34(chr13:100039860-114327173)x3 copy number gain See cases [RCV000053795] Chr13:100039860..114327173 [GRCh38]
Chr13:100692114..115085141 [GRCh37]
Chr13:99490115..114110750 [NCBI36]
Chr13:13q32.3-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:109162657-114327314)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053797]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053797]|See cases [RCV000053797] Chr13:109162657..114327314 [GRCh38]
Chr13:109815005..115085141 [GRCh37]
Chr13:108613006..114110891 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q34(chr13:111439396-114327173)x3 copy number gain See cases [RCV000053798] Chr13:111439396..114327173 [GRCh38]
Chr13:112091743..115085141 [GRCh37]
Chr13:110889744..114110750 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q34(chr13:112292922-113636272)x3 copy number gain See cases [RCV000053800] Chr13:112292922..113636272 [GRCh38]
Chr13:112947236..114290587 [GRCh37]
Chr13:111995237..113338588 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q14.11-34(chr13:44164751-114327173)x3 copy number gain See cases [RCV000053764] Chr13:44164751..114327173 [GRCh38]
Chr13:44738887..115085141 [GRCh37]
Chr13:43636887..114110750 [NCBI36]
Chr13:13q14.11-34
pathogenic
GRCh38/hg38 13q14.12-34(chr13:44733046-114327173)x3 copy number gain See cases [RCV000053767] Chr13:44733046..114327173 [GRCh38]
Chr13:45307182..115085141 [GRCh37]
Chr13:44205182..114110750 [NCBI36]
Chr13:13q14.12-34
pathogenic
GRCh38/hg38 13q22.1-34(chr13:74345951-114327314)x3 copy number gain See cases [RCV000053770] Chr13:74345951..114327314 [GRCh38]
Chr13:74920088..115085141 [GRCh37]
Chr13:73818089..114110891 [NCBI36]
Chr13:13q22.1-34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:80628584-114327173)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053772]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053772]|See cases [RCV000053772] Chr13:80628584..114327173 [GRCh38]
Chr13:81202719..115085141 [GRCh37]
Chr13:80100720..114110750 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:107918132-114327173)x3 copy number gain See cases [RCV000050921] Chr13:107918132..114327173 [GRCh38]
Chr13:108570480..115085141 [GRCh37]
Chr13:107368481..114110750 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q34(chr13:112505944-112884305)x3 copy number gain See cases [RCV000137041] Chr13:112505944..112884305 [GRCh38]
Chr13:113105619..113538619 [GRCh37]
Chr13:112153620..112586620 [NCBI36]
Chr13:13q34
benign
GRCh38/hg38 13q31.2-34(chr13:88937651-114327173)x3 copy number gain See cases [RCV000137102] Chr13:88937651..114327173 [GRCh38]
Chr13:89589905..115085141 [GRCh37]
Chr13:88387906..114110750 [NCBI36]
Chr13:13q31.2-34
pathogenic
GRCh38/hg38 13q33.1-34(chr13:101868708-114293545)x3 copy number gain See cases [RCV000136805] Chr13:101868708..114293545 [GRCh38]
Chr13:102521058..115059020 [GRCh37]
Chr13:101319059..114077122 [NCBI36]
Chr13:13q33.1-34
pathogenic
GRCh38/hg38 13q33.3-34(chr13:107075477-114340331)x1 copy number loss See cases [RCV000137684] Chr13:107075477..114340331 [GRCh38]
Chr13:107727825..115085141 [GRCh37]
Chr13:106525826..114123908 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q34(chr13:111118651-114340331)x3 copy number gain See cases [RCV000137378] Chr13:111118651..114340331 [GRCh38]
Chr13:111770998..115085141 [GRCh37]
Chr13:110568999..114123908 [NCBI36]
Chr13:13q34
likely pathogenic
GRCh38/hg38 13q33.1-34(chr13:102883322-114340331)x1 copy number loss See cases [RCV000137823] Chr13:102883322..114340331 [GRCh38]
Chr13:103535672..115085141 [GRCh37]
Chr13:102333673..114123908 [NCBI36]
Chr13:13q33.1-34
pathogenic
GRCh38/hg38 13q14.11-34(chr13:40942298-114340331)x1 copy number loss See cases [RCV000137893] Chr13:40942298..114340331 [GRCh38]
Chr13:41516434..115085141 [GRCh37]
Chr13:40414434..114123908 [NCBI36]
Chr13:13q14.11-34
pathogenic
GRCh38/hg38 13q34(chr13:111355741-114340331)x1 copy number loss See cases [RCV000137957] Chr13:111355741..114340331 [GRCh38]
Chr13:112008088..115085141 [GRCh37]
Chr13:110806089..114123908 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:78999318-114327106)x3 copy number gain See cases [RCV000138742] Chr13:78999318..114327106 [GRCh38]
Chr13:79573453..115085141 [GRCh37]
Chr13:78471454..114110683 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:86788927-114340331)x1 copy number loss See cases [RCV000138340] Chr13:86788927..114340331 [GRCh38]
Chr13:87441182..115085141 [GRCh37]
Chr13:86239183..114123908 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q32.1-34(chr13:96745059-114327106)x3 copy number gain See cases [RCV000139160] Chr13:96745059..114327106 [GRCh38]
Chr13:97397313..115085141 [GRCh37]
Chr13:96195314..114110683 [NCBI36]
Chr13:13q32.1-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:105861075-114342258)x1 copy number loss See cases [RCV000140449] Chr13:105861075..114342258 [GRCh38]
Chr13:106513424..115107733 [GRCh37]
Chr13:105311425..114125835 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q33.1-34(chr13:101762788-114340285)x3 copy number gain See cases [RCV000141331] Chr13:101762788..114340285 [GRCh38]
Chr13:102415138..115105760 [GRCh37]
Chr13:101213139..114123862 [NCBI36]
Chr13:13q33.1-34
pathogenic
GRCh38/hg38 13q34(chr13:111200986-114340331)x1 copy number loss See cases [RCV000141232] Chr13:111200986..114340331 [GRCh38]
Chr13:111853333..115085141 [GRCh37]
Chr13:110651334..114123908 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:78964223-114340331)x3 copy number gain See cases [RCV000141248] Chr13:78964223..114340331 [GRCh38]
Chr13:79538358..115085141 [GRCh37]
Chr13:78436359..114123908 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q31.1-34(chr13:83288131-114342258)x3 copy number gain See cases [RCV000141804] Chr13:83288131..114342258 [GRCh38]
Chr13:83862266..115107733 [GRCh37]
Chr13:82760267..114125835 [NCBI36]
Chr13:13q31.1-34
pathogenic
GRCh38/hg38 13q34(chr13:110857896-114342258)x1 copy number loss See cases [RCV000143102] Chr13:110857896..114342258 [GRCh38]
Chr13:111510243..115107733 [GRCh37]
Chr13:110308244..114125835 [NCBI36]
Chr13:13q34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:104968135-114340331)x1 copy number loss See cases [RCV000143330] Chr13:104968135..114340331 [GRCh38]
Chr13:105620486..115085141 [GRCh37]
Chr13:104418487..114123908 [NCBI36]
Chr13:13q33.2-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q33.2-34(chr13:105423935-114342258)x3 copy number gain See cases [RCV000143556] Chr13:105423935..114342258 [GRCh38]
Chr13:106076284..115107733 [GRCh37]
Chr13:104874285..114125835 [NCBI36]
Chr13:13q33.2-34
uncertain significance
GRCh38/hg38 13q33.3-34(chr13:107918132-114327173)x1 copy number loss See cases [RCV000148262] Chr13:107918132..114327173 [GRCh38]
Chr13:108570480..115085141 [GRCh37]
Chr13:107368481..114110750 [NCBI36]
Chr13:13q33.3-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q31.2-34(chr13:89796110-115083342)x1 copy number loss See cases [RCV000240161] Chr13:89796110..115083342 [GRCh37]
Chr13:13q31.2-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34
pathogenic
NM_006322.6(TUBGCP3):c.1097G>A (p.Arg366His) single nucleotide variant Inborn genetic diseases [RCV003268742] Chr13:112547691 [GRCh38]
Chr13:113202005 [GRCh37]
Chr13:13q34
uncertain significance
GRCh37/hg19 13q21.2-34(chr13:61424168-115107733)x3 copy number gain See cases [RCV000449118] Chr13:61424168..115107733 [GRCh37]
Chr13:13q21.2-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q34(chr13:111282121-115107733)x1 copy number loss See cases [RCV000447085] Chr13:111282121..115107733 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q31.3-34(chr13:94269729-115107733)x3 copy number gain See cases [RCV000447545] Chr13:94269729..115107733 [GRCh37]
Chr13:13q31.3-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106941499-113674752)x3 copy number gain See cases [RCV000447024] Chr13:106941499..113674752 [GRCh37]
Chr13:13q33.2-34
uncertain significance
GRCh37/hg19 13q31.1-34(chr13:82221361-115092569)x3 copy number gain See cases [RCV000447429] Chr13:82221361..115092569 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106450862-115107733)x1 copy number loss See cases [RCV000447192] Chr13:106450862..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q32.3-34(chr13:101357397-115107733)x3 copy number gain See cases [RCV000447642] Chr13:101357397..115107733 [GRCh37]
Chr13:13q32.3-34
pathogenic
GRCh37/hg19 13q21.1-34(chr13:56431743-115107733) copy number gain See cases [RCV000510722] Chr13:56431743..115107733 [GRCh37]
Chr13:13q21.1-34
pathogenic
GRCh37/hg19 13q34(chr13:111550457-115107733)x1 copy number loss See cases [RCV000445865] Chr13:111550457..115107733 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q34(chr13:112091743-115092510)x1 copy number loss See cases [RCV000448192] Chr13:112091743..115092510 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q31.2-34(chr13:88073140-115107733)x1 copy number loss See cases [RCV000448405] Chr13:88073140..115107733 [GRCh37]
Chr13:13q31.2-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106056749-115107733)x1 copy number loss See cases [RCV000448783] Chr13:106056749..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:103170306-115107733)x1 copy number loss See cases [RCV000512127] Chr13:103170306..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q33.3-34(chr13:109151651-115107733)x1 copy number loss See cases [RCV000512069] Chr13:109151651..115107733 [GRCh37]
Chr13:13q33.3-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q31.3-34(chr13:94474530-115107733)x1 copy number loss See cases [RCV000510535] Chr13:94474530..115107733 [GRCh37]
Chr13:13q31.3-34
pathogenic
GRCh37/hg19 13q21.33-34(chr13:71871468-115107733)x4 copy number gain See cases [RCV000510281] Chr13:71871468..115107733 [GRCh37]
Chr13:13q21.33-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:80058840-115107733)x3 copy number gain See cases [RCV000510566] Chr13:80058840..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:103880953-115107733)x1 copy number loss See cases [RCV000510433] Chr13:103880953..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q32.1-34(chr13:96586481-115107733)x1 copy number loss See cases [RCV000512257] Chr13:96586481..115107733 [GRCh37]
Chr13:13q32.1-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:83435292-115107733)x3 copy number gain See cases [RCV000512605] Chr13:83435292..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:85176519-115107733)x3 copy number gain See cases [RCV000512242] Chr13:85176519..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q33.3-34(chr13:109771548-115107733)x1 copy number loss not provided [RCV000683563] Chr13:109771548..115107733 [GRCh37]
Chr13:13q33.3-34
pathogenic
GRCh37/hg19 13q34(chr13:112530842-115107733)x1 copy number loss not provided [RCV000683558] Chr13:112530842..115107733 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q22.3-34(chr13:78590089-115107733)x3 copy number gain not provided [RCV000683571] Chr13:78590089..115107733 [GRCh37]
Chr13:13q22.3-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:105389857-113467489)x1 copy number loss not provided [RCV000683567] Chr13:105389857..113467489 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q33.3-34(chr13:108567578-115107733)x3 copy number gain not provided [RCV000683565] Chr13:108567578..115107733 [GRCh37]
Chr13:13q33.3-34
pathogenic
GRCh37/hg19 13q33.3-34(chr13:108083664-115107733)x1 copy number loss not provided [RCV000683566] Chr13:108083664..115107733 [GRCh37]
Chr13:13q33.3-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q32.3-34(chr13:101075864-115105020)x1 copy number loss not provided [RCV000738357] Chr13:101075864..115105020 [GRCh37]
Chr13:13q32.3-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:104539503-115103529)x1 copy number loss not provided [RCV000750890] Chr13:104539503..115103529 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q34(chr13:111152478-114527838)x1 copy number loss not provided [RCV000750904] Chr13:111152478..114527838 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q34(chr13:111217422-115103529)x1 copy number loss not provided [RCV000750906] Chr13:111217422..115103529 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:101881803-115091330) copy number gain not provided [RCV000767821] Chr13:101881803..115091330 [GRCh37]
Chr13:13q33.1-34
pathogenic
NM_006322.6(TUBGCP3):c.943C>T (p.Arg315Cys) single nucleotide variant Inborn genetic diseases [RCV003270625] Chr13:112554080 [GRCh38]
Chr13:113208394 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1115A>G (p.Tyr372Cys) single nucleotide variant Inborn genetic diseases [RCV003248671] Chr13:112547673 [GRCh38]
Chr13:113201987 [GRCh37]
Chr13:13q34
uncertain significance
GRCh37/hg19 13q34(chr13:111568865-115107733)x1 copy number loss not provided [RCV000846886] Chr13:111568865..115107733 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
Single allele deletion not provided [RCV000845021] Chr13:107452288..115092569 [GRCh37]
Chr13:13q33.3-34
not provided
GRCh37/hg19 13q33.3-34(chr13:109203109-115107733)x3 copy number gain not provided [RCV000848672] Chr13:109203109..115107733 [GRCh37]
Chr13:13q33.3-34
uncertain significance
GRCh37/hg19 13q31.3-34(chr13:94849303-115107733)x3 copy number gain not provided [RCV000847710] Chr13:94849303..115107733 [GRCh37]
Chr13:13q31.3-34
uncertain significance
GRCh37/hg19 13q21.2-34(chr13:61775567-115107733)x3 copy number gain not provided [RCV000848025] Chr13:61775567..115107733 [GRCh37]
Chr13:13q21.2-34
pathogenic
NM_006322.6(TUBGCP3):c.2253C>A (p.His751Gln) single nucleotide variant Inborn genetic diseases [RCV003293298] Chr13:112504086 [GRCh38]
Chr13:113158400 [GRCh37]
Chr13:13q34
uncertain significance
GRCh37/hg19 13q14.3-34(chr13:53262013-115107733)x1 copy number loss not provided [RCV001006567] Chr13:53262013..115107733 [GRCh37]
Chr13:13q14.3-34
pathogenic
GRCh37/hg19 13q32.1-34(chr13:96895656-115107733)x1 copy number loss not provided [RCV001006591] Chr13:96895656..115107733 [GRCh37]
Chr13:13q32.1-34
pathogenic
GRCh37/hg19 13q34(chr13:112069981-115107733)x3 copy number gain not provided [RCV001259172] Chr13:112069981..115107733 [GRCh37]
Chr13:13q34
likely pathogenic
Single allele deletion not provided [RCV001260932] Chr13:102175801..115169858 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106256198-115107733)x1 copy number loss not provided [RCV001259170] Chr13:106256198..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878) copy number gain Complete trisomy 13 syndrome [RCV002280659] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
GRCh37/hg19 13q34(chr13:110428062-115107733) copy number loss Neurodevelopmental delay [RCV002280627] Chr13:110428062..115107733 [GRCh37]
Chr13:13q34
pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878)x3 copy number gain See cases [RCV001780076] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
Single allele deletion Factor X deficiency [RCV001807695] Chr13:110801268..113803893 [GRCh37]
Chr13:13q34
likely pathogenic
NC_000013.11:g.109179481_114327244del deletion Factor X deficiency [RCV001818108] Chr13:109179481..114327244 [GRCh38]
Chr13:13q33.3-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:85037147-115107733) copy number gain not specified [RCV002053073] Chr13:85037147..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV001834436] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106450862-115107733) copy number loss not specified [RCV002053084] Chr13:106450862..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:79370012-115107733) copy number loss not specified [RCV002053072] Chr13:79370012..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q32.3-34(chr13:100258328-115107733) copy number loss not specified [RCV002053077] Chr13:100258328..115107733 [GRCh37]
Chr13:13q32.3-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-114981726) copy number gain not specified [RCV002053035] Chr13:19436286..114981726 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733) copy number gain not specified [RCV002053036] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q31.2-34(chr13:88073140-115107733) copy number loss not specified [RCV002053074] Chr13:88073140..115107733 [GRCh37]
Chr13:13q31.2-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106056749-115107733) copy number loss not specified [RCV002053083] Chr13:106056749..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q22.3-34(chr13:78514567-115107733) copy number gain not specified [RCV002053071] Chr13:78514567..115107733 [GRCh37]
Chr13:13q22.3-34
pathogenic
GRCh37/hg19 13q21.2-34(chr13:61424168-115107733) copy number gain not specified [RCV002053063] Chr13:61424168..115107733 [GRCh37]
Chr13:13q21.2-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:104545892-115107733) copy number loss not specified [RCV002053082] Chr13:104545892..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q31.2-34(chr13:89490345-115062235)x3 copy number gain See cases [RCV002286354] Chr13:89490345..115062235 [GRCh37]
Chr13:13q31.2-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19253848-115108937)x3 copy number gain not provided [RCV002291540] Chr13:19253848..115108937 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q22.1-34(chr13:75268539-115107733)x3 copy number gain not provided [RCV002472537] Chr13:75268539..115107733 [GRCh37]
Chr13:13q22.1-34
pathogenic
GRCh37/hg19 13q32.1-34(chr13:97142120-115107733)x1 copy number loss not provided [RCV002474828] Chr13:97142120..115107733 [GRCh37]
Chr13:13q32.1-34
pathogenic
GRCh37/hg19 13q34(chr13:113196617-113800575)x1 copy number loss not provided [RCV002473601] Chr13:113196617..113800575 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.463G>A (p.Gly155Ser) single nucleotide variant Inborn genetic diseases [RCV002974107] Chr13:112558281 [GRCh38]
Chr13:113212595 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.316A>G (p.Arg106Gly) single nucleotide variant Inborn genetic diseases [RCV002907328] Chr13:112559336 [GRCh38]
Chr13:113213650 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1877T>C (p.Leu626Pro) single nucleotide variant Inborn genetic diseases [RCV002732437] Chr13:112519890 [GRCh38]
Chr13:113174204 [GRCh37]
Chr13:13q34
uncertain significance
GRCh37/hg19 13q32.3-34(chr13:99421603-115107733)x3 copy number gain not provided [RCV002475671] Chr13:99421603..115107733 [GRCh37]
Chr13:13q32.3-34
pathogenic
NM_006322.6(TUBGCP3):c.406C>T (p.Pro136Ser) single nucleotide variant Inborn genetic diseases [RCV002762800] Chr13:112558338 [GRCh38]
Chr13:113212652 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.958G>A (p.Val320Ile) single nucleotide variant Inborn genetic diseases [RCV002924571] Chr13:112554065 [GRCh38]
Chr13:113208379 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.769G>A (p.Val257Ile) single nucleotide variant Inborn genetic diseases [RCV002704665] Chr13:112554958 [GRCh38]
Chr13:113209272 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.400G>A (p.Ala134Thr) single nucleotide variant Inborn genetic diseases [RCV002926041] Chr13:112558344 [GRCh38]
Chr13:113212658 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.2281C>T (p.Arg761Cys) single nucleotide variant Inborn genetic diseases [RCV002911466] Chr13:112504058 [GRCh38]
Chr13:113158372 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.296G>A (p.Ser99Asn) single nucleotide variant Inborn genetic diseases [RCV002822499] Chr13:112559356 [GRCh38]
Chr13:113213670 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.436C>T (p.Arg146Trp) single nucleotide variant Inborn genetic diseases [RCV002846070] Chr13:112558308 [GRCh38]
Chr13:113212622 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.527C>T (p.Ala176Val) single nucleotide variant Inborn genetic diseases [RCV002699262] Chr13:112558217 [GRCh38]
Chr13:113212531 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.617C>T (p.Thr206Ile) single nucleotide variant Inborn genetic diseases [RCV002879211] Chr13:112556156 [GRCh38]
Chr13:113210470 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1010G>A (p.Arg337Gln) single nucleotide variant Inborn genetic diseases [RCV002809355] Chr13:112548133 [GRCh38]
Chr13:113202447 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1196C>T (p.Ala399Val) single nucleotide variant Inborn genetic diseases [RCV002670006] Chr13:112545838 [GRCh38]
Chr13:113200152 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1433A>G (p.Asp478Gly) single nucleotide variant Inborn genetic diseases [RCV002723825] Chr13:112527387 [GRCh38]
Chr13:113181701 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.2024A>G (p.Tyr675Cys) single nucleotide variant Inborn genetic diseases [RCV002655910] Chr13:112516502 [GRCh38]
Chr13:113170816 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.397T>C (p.Tyr133His) single nucleotide variant Inborn genetic diseases [RCV003208238] Chr13:112558347 [GRCh38]
Chr13:113212661 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.2278T>C (p.Ser760Pro) single nucleotide variant Inborn genetic diseases [RCV003199450] Chr13:112504061 [GRCh38]
Chr13:113158375 [GRCh37]
Chr13:13q34
uncertain significance
GRCh38/hg38 13q33.3-34(chr13:106425676-114326445)x1 copy number loss Chromosome 13q33-q34 deletion syndrome [RCV003327641] Chr13:106425676..114326445 [GRCh38]
Chr13:13q33.3-34
pathogenic
NM_006322.6(TUBGCP3):c.314G>A (p.Arg105His) single nucleotide variant Inborn genetic diseases [RCV003341484] Chr13:112559338 [GRCh38]
Chr13:113213652 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.10C>T (p.Pro4Ser) single nucleotide variant Inborn genetic diseases [RCV003351597] Chr13:112587971 [GRCh38]
Chr13:113242285 [GRCh37]
Chr13:13q34
uncertain significance
NM_006322.6(TUBGCP3):c.1168+37CGCGCGACTTTCCCA[2] microsatellite not specified [RCV003457239] Chr13:112547539..112547553 [GRCh38]
Chr13:113201853..113201867 [GRCh37]
Chr13:13q34
benign
GRCh37/hg19 13q21.2-34(chr13:61534068-115107733)x3 copy number gain not provided [RCV003484899] Chr13:61534068..115107733 [GRCh37]
Chr13:13q21.2-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:82131211-115107733)x1 copy number loss not provided [RCV003483192] Chr13:82131211..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q22.1-34(chr13:73488238-115107733)x3 copy number gain not provided [RCV003484901] Chr13:73488238..115107733 [GRCh37]
Chr13:13q22.1-34
pathogenic
NM_006322.6(TUBGCP3):c.1168+73_1168+102del deletion not provided [RCV003411008] Chr13:112547518..112547547 [GRCh38]
Chr13:113201832..113201861 [GRCh37]
Chr13:13q34
likely benign
GRCh37/hg19 13q33.2-34(chr13:106591678-115107733)x1 copy number loss not specified [RCV003987016] Chr13:106591678..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:103149209-115107733)x1 copy number loss not specified [RCV003987029] Chr13:103149209..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:84669397-115107733)x1 copy number loss not specified [RCV003987038] Chr13:84669397..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:106430837-114763645)x3 copy number gain not specified [RCV003987031] Chr13:106430837..114763645 [GRCh37]
Chr13:13q33.2-34
uncertain significance
GRCh37/hg19 13q33.1-34(chr13:104389334-115107733)x1 copy number loss not specified [RCV003987019] Chr13:104389334..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q33.2-34(chr13:105761074-115107733)x1 copy number loss not specified [RCV003987020] Chr13:105761074..115107733 [GRCh37]
Chr13:13q33.2-34
pathogenic
GRCh37/hg19 13q31.1-34(chr13:82876219-115107733)x3 copy number gain not specified [RCV003987023] Chr13:82876219..115107733 [GRCh37]
Chr13:13q31.1-34
pathogenic
GRCh37/hg19 13q33.1-34(chr13:102421732-115107733)x1 copy number loss not specified [RCV003987036] Chr13:102421732..115107733 [GRCh37]
Chr13:13q33.1-34
pathogenic
GRCh37/hg19 13q34(chr13:113158346-115091756)x1 copy number loss not provided [RCV003885459] Chr13:113158346..115091756 [GRCh37]
Chr13:13q34
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1227
Count of miRNA genes:732
Interacting mature miRNAs:822
Transcripts:ENST00000261965, ENST00000375669, ENST00000462580, ENST00000464139, ENST00000469302, ENST00000483532
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH45555  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3713113,139,405 - 113,139,521UniSTSGRCh37
Build 3613112,187,406 - 112,187,522RGDNCBI36
Celera1393,964,720 - 93,964,836RGD
Cytogenetic Map13q34UniSTS
HuRef1393,581,008 - 93,581,124UniSTS
GeneMap99-GB4 RH Map13313.33UniSTS
NCBI RH Map131041.4UniSTS
D13S503E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3713113,139,405 - 113,139,625UniSTSGRCh37
Build 3613112,187,406 - 112,187,626RGDNCBI36
Celera1393,964,720 - 93,964,940RGD
Cytogenetic Map13q34UniSTS
HuRef1393,581,008 - 93,581,228UniSTS
SHGC-149674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3713113,176,202 - 113,176,486UniSTSGRCh37
Build 3613112,224,203 - 112,224,487RGDNCBI36
Celera1394,001,519 - 94,001,803RGD
Cytogenetic Map13q34UniSTS
HuRef1393,617,806 - 93,618,090UniSTS
TNG Radiation Hybrid Map1343253.0UniSTS
RH44376  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3713113,139,380 - 113,139,569UniSTSGRCh37
Build 3613112,187,381 - 112,187,570RGDNCBI36
Celera1393,964,695 - 93,964,884RGD
Cytogenetic Map13q34UniSTS
HuRef1393,580,983 - 93,581,172UniSTS
GeneMap99-GB4 RH Map13313.33UniSTS
NCBI RH Map131041.4UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1112 1200 699 102 1223 78 3021 556 1221 175 1191 1216 41 1 646 1769 5 1
Low 1327 1787 1027 522 728 387 1336 1637 2513 244 269 397 134 558 1019 1 1
Below cutoff 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005268293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011537462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001749455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007063655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA720688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF042378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ003061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ003062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL139384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL160033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP381545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT009772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000261965   ⟹   ENSP00000261965
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,485,011 - 112,588,153 (-)Ensembl
RefSeq Acc Id: ENST00000375669   ⟹   ENSP00000364821
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,498,807 - 112,588,125 (-)Ensembl
RefSeq Acc Id: ENST00000462580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,522,320 - 112,546,203 (-)Ensembl
RefSeq Acc Id: ENST00000464139   ⟹   ENSP00000478276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,546,482 - 112,588,135 (-)Ensembl
RefSeq Acc Id: ENST00000469302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,485,844 - 112,489,823 (-)Ensembl
RefSeq Acc Id: ENST00000483532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,558,196 - 112,587,346 (-)Ensembl
RefSeq Acc Id: ENST00000611152   ⟹   ENSP00000482912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,544,556 - 112,548,172 (-)Ensembl
RefSeq Acc Id: ENST00000649778   ⟹   ENSP00000497715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl13112,485,033 - 112,588,205 (-)Ensembl
RefSeq Acc Id: NM_001286277   ⟹   NP_001273206
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,588,153 (-)NCBI
HuRef1393,580,922 - 93,683,854 (-)NCBI
CHM1_113113,105,125 - 113,211,516 (-)NCBI
T2T-CHM13v2.013111,732,118 - 111,835,832 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286278   ⟹   NP_001273207
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,498,807 - 112,588,153 (-)NCBI
HuRef1393,580,922 - 93,683,854 (-)NCBI
CHM1_113113,118,927 - 113,211,516 (-)NCBI
T2T-CHM13v2.013111,745,922 - 111,835,832 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286279   ⟹   NP_001273208
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,546,482 - 112,588,153 (-)NCBI
HuRef1393,580,922 - 93,683,854 (-)NCBI
CHM1_113113,166,601 - 113,211,516 (-)NCBI
T2T-CHM13v2.013111,794,152 - 111,835,832 (-)NCBI
Sequence:
RefSeq Acc Id: NM_006322   ⟹   NP_006313
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,588,153 (-)NCBI
GRCh3713113,139,319 - 113,242,494 (-)NCBI
Build 3613112,187,326 - 112,290,482 (-)NCBI Archive
Celera1393,964,643 - 94,067,798 (-)RGD
HuRef1393,580,922 - 93,683,854 (-)NCBI
CHM1_113113,105,125 - 113,211,516 (-)NCBI
T2T-CHM13v2.013111,732,118 - 111,835,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005268293   ⟹   XP_005268350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,498,807 - 112,588,153 (-)NCBI
GRCh3713113,139,319 - 113,242,494 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011537462   ⟹   XP_011535764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,588,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020323   ⟹   XP_016875812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,605,630 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047430036   ⟹   XP_047285992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,498,807 - 112,588,153 (-)NCBI
RefSeq Acc Id: XM_047430037   ⟹   XP_047285993
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,498,807 - 112,588,153 (-)NCBI
RefSeq Acc Id: XM_047430038   ⟹   XP_047285994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,587,421 (-)NCBI
RefSeq Acc Id: XM_047430039   ⟹   XP_047285995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,485,011 - 112,588,153 (-)NCBI
RefSeq Acc Id: XM_054374003   ⟹   XP_054229978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,732,118 - 111,835,553 (-)NCBI
RefSeq Acc Id: XM_054374004   ⟹   XP_054229979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,732,118 - 111,835,832 (-)NCBI
RefSeq Acc Id: XM_054374005   ⟹   XP_054229980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,745,922 - 111,835,832 (-)NCBI
RefSeq Acc Id: XM_054374006   ⟹   XP_054229981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,732,118 - 111,835,832 (-)NCBI
RefSeq Acc Id: XM_054374007   ⟹   XP_054229982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,745,922 - 111,835,832 (-)NCBI
RefSeq Acc Id: XM_054374008   ⟹   XP_054229983
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,745,922 - 111,835,832 (-)NCBI
RefSeq Acc Id: XM_054374009   ⟹   XP_054229984
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,732,118 - 111,854,166 (-)NCBI
RefSeq Acc Id: XM_054374010   ⟹   XP_054229985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,732,118 - 111,854,172 (-)NCBI
RefSeq Acc Id: XR_007063655
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,519,937 - 112,588,153 (-)NCBI
RefSeq Acc Id: XR_008488725
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.013111,767,047 - 111,835,832 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001273206 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273207 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273208 (Get FASTA)   NCBI Sequence Viewer  
  NP_006313 (Get FASTA)   NCBI Sequence Viewer  
  XP_005268350 (Get FASTA)   NCBI Sequence Viewer  
  XP_011535764 (Get FASTA)   NCBI Sequence Viewer  
  XP_016875812 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285992 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285993 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285994 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285995 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229978 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229979 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229980 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229981 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229982 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229983 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229984 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229985 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC39727 (Get FASTA)   NCBI Sequence Viewer  
  AAH07763 (Get FASTA)   NCBI Sequence Viewer  
  AAH13781 (Get FASTA)   NCBI Sequence Viewer  
  AAH46634 (Get FASTA)   NCBI Sequence Viewer  
  AAP88774 (Get FASTA)   NCBI Sequence Viewer  
  BAG37319 (Get FASTA)   NCBI Sequence Viewer  
  BAG63809 (Get FASTA)   NCBI Sequence Viewer  
  CAA05832 (Get FASTA)   NCBI Sequence Viewer  
  CAA05833 (Get FASTA)   NCBI Sequence Viewer  
  EAX09163 (Get FASTA)   NCBI Sequence Viewer  
  EAX09164 (Get FASTA)   NCBI Sequence Viewer  
  EAX09165 (Get FASTA)   NCBI Sequence Viewer  
  EAX09166 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000261965
  ENSP00000261965.3
  ENSP00000364821
  ENSP00000364821.3
  ENSP00000478276
  ENSP00000478276.1
  ENSP00000482912.1
  ENSP00000488256.1
  ENSP00000488264.1
  ENSP00000497715.1
GenBank Protein Q96CW5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_006313   ⟸   NM_006322
- Peptide Label: isoform 1
- UniProtKB: Q7Z4K1 (UniProtKB/Swiss-Prot),   Q5T8L2 (UniProtKB/Swiss-Prot),   O60853 (UniProtKB/Swiss-Prot),   O60852 (UniProtKB/Swiss-Prot),   O43631 (UniProtKB/Swiss-Prot),   Q96I79 (UniProtKB/Swiss-Prot),   Q96CW5 (UniProtKB/Swiss-Prot),   B4DYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005268350   ⟸   XM_005268293
- Peptide Label: isoform X1
- UniProtKB: B4DYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273206   ⟸   NM_001286277
- Peptide Label: isoform 2
- UniProtKB: B4DYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273207   ⟸   NM_001286278
- Peptide Label: isoform 3
- UniProtKB: B4DYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273208   ⟸   NM_001286279
- Peptide Label: isoform 4
- UniProtKB: A0A087WU06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011535764   ⟸   XM_011537462
- Peptide Label: isoform X2
- UniProtKB: B4DYP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016875812   ⟸   XM_017020323
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSP00000497715   ⟸   ENST00000649778
RefSeq Acc Id: ENSP00000478276   ⟸   ENST00000464139
RefSeq Acc Id: ENSP00000482912   ⟸   ENST00000611152
RefSeq Acc Id: ENSP00000364821   ⟸   ENST00000375669
RefSeq Acc Id: ENSP00000261965   ⟸   ENST00000261965
RefSeq Acc Id: XP_047285995   ⟸   XM_047430039
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047285994   ⟸   XM_047430038
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047285992   ⟸   XM_047430036
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047285993   ⟸   XM_047430037
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054229985   ⟸   XM_054374010
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054229984   ⟸   XM_054374009
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054229981   ⟸   XM_054374006
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054229979   ⟸   XM_054374004
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054229978   ⟸   XM_054374003
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054229982   ⟸   XM_054374007
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054229983   ⟸   XM_054374008
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054229980   ⟸   XM_054374005
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96CW5-F1-model_v2 AlphaFold Q96CW5 1-907 view protein structure

Promoters
RGD ID:6791176
Promoter ID:HG_KWN:18596
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:OTTHUMT00000045830
Position:
Human AssemblyChrPosition (strand)Source
Build 3613112,249,161 - 112,249,661 (-)MPROMDB
RGD ID:6791175
Promoter ID:HG_KWN:18597
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000045829
Position:
Human AssemblyChrPosition (strand)Source
Build 3613112,289,831 - 112,290,537 (-)MPROMDB
RGD ID:6791174
Promoter ID:HG_KWN:18598
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000045825,   OTTHUMT00000045826,   UC001VSG.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3613112,290,391 - 112,291,292 (-)MPROMDB
RGD ID:7226859
Promoter ID:EPDNEW_H19175
Type:initiation region
Name:TUBGCP3_1
Description:tubulin gamma complex associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19176  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,588,151 - 112,588,211EPDNEW
RGD ID:7226867
Promoter ID:EPDNEW_H19176
Type:initiation region
Name:TUBGCP3_2
Description:tubulin gamma complex associated protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H19175  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3813112,588,271 - 112,588,331EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18598 AgrOrtholog
COSMIC TUBGCP3 COSMIC
Ensembl Genes ENSG00000126216 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000282003 UniProtKB/TrEMBL
Ensembl Transcript ENST00000261965 ENTREZGENE
  ENST00000261965.8 UniProtKB/Swiss-Prot
  ENST00000375669 ENTREZGENE
  ENST00000375669.7 UniProtKB/Swiss-Prot
  ENST00000464139 ENTREZGENE
  ENST00000464139.5 UniProtKB/TrEMBL
  ENST00000611152.1 UniProtKB/TrEMBL
  ENST00000631451.1 UniProtKB/TrEMBL
  ENST00000633234.1 UniProtKB/TrEMBL
  ENST00000649778.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000126216 GTEx
  ENSG00000282003 GTEx
HGNC ID HGNC:18598 ENTREZGENE
Human Proteome Map TUBGCP3 Human Proteome Map
InterPro GCP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GCP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GCP_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GCP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10426 UniProtKB/Swiss-Prot
NCBI Gene 10426 ENTREZGENE
OMIM 617818 OMIM
PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19302 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GCP_C_terminal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GCP_N_terminal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38597 PharmGKB
UniProt A0A087WU06 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WZV5_HUMAN UniProtKB/TrEMBL
  A0A0J9YX56_HUMAN UniProtKB/TrEMBL
  A0A0J9YX63_HUMAN UniProtKB/TrEMBL
  A0A3B3ITE3_HUMAN UniProtKB/TrEMBL
  B4DYP7 ENTREZGENE, UniProtKB/TrEMBL
  GCP3_HUMAN UniProtKB/Swiss-Prot
  O43631 ENTREZGENE
  O60852 ENTREZGENE
  O60853 ENTREZGENE
  Q5T8L2 ENTREZGENE
  Q7Z4K1 ENTREZGENE
  Q96CW5 ENTREZGENE
  Q96I79 ENTREZGENE
UniProt Secondary O43631 UniProtKB/Swiss-Prot
  O60852 UniProtKB/Swiss-Prot
  O60853 UniProtKB/Swiss-Prot
  Q5T8L2 UniProtKB/Swiss-Prot
  Q7Z4K1 UniProtKB/Swiss-Prot
  Q96I79 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-19 TUBGCP3  tubulin gamma complex component 3  TUBGCP3  tubulin gamma complex associated protein 3  Symbol and/or name change 19259463 PROVISIONAL
2015-12-22 TUBGCP3  tubulin gamma complex associated protein 3    tubulin, gamma complex associated protein 3  Symbol and/or name change 5135510 APPROVED