Sarnp (SAP domain containing ribonucleoprotein) - Rat Genome Database

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Gene: Sarnp (SAP domain containing ribonucleoprotein) Mus musculus
Analyze
Symbol: Sarnp
Name: SAP domain containing ribonucleoprotein
RGD ID: 1313869
MGI Page MGI
Description: Enables chromatin binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including central nervous system; early conceptus; limb; oocyte; and retina. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110005A23Rik; Cip29; nuclear protein Hcc-1; SAP domain-containing ribonucleoprotein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm6563  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,657,633 - 128,713,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,653,202 - 128,713,498 (+)EnsemblGRCm39 Ensembl
GRCm3810128,821,764 - 128,877,638 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,817,333 - 128,877,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,258,827 - 128,314,694 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,224,868 - 128,280,566 (+)NCBIMGSCv36mm8
Celera10131,214,346 - 131,270,179 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11752298   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14729942   PMID:15226823  
PMID:15489334   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18480465   PMID:18799693   PMID:20059953   PMID:20412781   PMID:21873635   PMID:26142281  
PMID:26426291   PMID:30196744   PMID:32325033   PMID:32968282  


Genomics

Comparative Map Data
Sarnp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,657,633 - 128,713,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,653,202 - 128,713,498 (+)EnsemblGRCm39 Ensembl
GRCm3810128,821,764 - 128,877,638 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,817,333 - 128,877,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,258,827 - 128,314,694 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,224,868 - 128,280,566 (+)NCBIMGSCv36mm8
Celera10131,214,346 - 131,270,179 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.16NCBI
SARNP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,752,463 - 55,817,724 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,752,463 - 55,817,724 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,146,247 - 56,211,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,437,325 - 54,497,773 (-)NCBINCBI36Build 36hg18NCBI36
Celera1255,798,717 - 55,863,901 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,185,208 - 53,249,923 (-)NCBIHuRef
CHM1_11256,112,996 - 56,178,310 (-)NCBICHM1_1
T2T-CHM13v2.01255,719,098 - 55,784,368 (-)NCBIT2T-CHM13v2.0
Sarnp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,835,597 - 1,889,833 (+)NCBIGRCr8
mRatBN7.271,251,096 - 1,305,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,251,098 - 1,305,332 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx74,015,553 - 4,069,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,891,214 - 5,945,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,192,490 - 6,246,650 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,246,220 - 3,300,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,246,220 - 3,300,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.073,217,778 - 3,271,845 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,121,254 - 2,176,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,121,394 - 2,176,059 (+)NCBI
Celera71,121,855 - 1,176,089 (+)NCBICelera
Cytogenetic Map7q11NCBI
Sarnp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,402,822 - 3,451,193 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,396,443 - 3,451,193 (-)NCBIChiLan1.0ChiLan1.0
LOC100976160
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,497,625 - 38,577,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,494,380 - 38,574,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01233,093,916 - 33,159,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,818,823 - 33,879,358 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,808,532 - 33,814,616 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1233,818,823 - 33,879,358 (+)Ensemblpanpan1.1panPan2
SARNP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110153,682 - 203,598 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10153,766 - 203,509 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10215,941 - 265,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010160,817 - 210,447 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10158,977 - 210,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110138,488 - 188,389 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010381,571 - 431,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010505,504 - 555,421 (-)NCBIUU_Cfam_GSD_1.0
Sarnp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,589,671 - 58,644,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646232,356 - 280,589 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646226,333 - 280,562 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SARNP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,199,422 - 21,261,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,203,048 - 21,262,437 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,686,457 - 22,742,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SARNP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,702,975 - 51,768,435 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,707,532 - 51,768,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037194,225,541 - 194,291,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sarnp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,200,312 - 12,254,195 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480212,200,201 - 12,260,246 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sarnp
1389 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:78
Interacting mature miRNAs:85
Transcripts:ENSMUST00000105230
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse

Markers in Region
14.MMHAP33FRE8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810128,876,334 - 128,876,619UniSTSGRCm38
MGSCv3710128,313,390 - 128,313,675UniSTSGRCm37
Celera10131,268,875 - 131,269,160UniSTS
Cytogenetic Map10C1UniSTS
Whitehead_YAC10 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA790241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA881913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI182967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW824990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC172063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE847644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF147077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF148013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY391953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF949496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ053601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV045727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W98278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000105230   ⟹   ENSMUSP00000100863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,657,763 - 128,713,486 (+)Ensembl
GRCm38.p6 Ensembl10128,821,894 - 128,877,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,653,202 - 128,684,660 (+)Ensembl
GRCm38.p6 Ensembl10128,817,333 - 128,848,791 (+)Ensembl
RefSeq Acc Id: ENSMUST00000219512   ⟹   ENSMUSP00000151656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,657,766 - 128,713,493 (+)Ensembl
GRCm38.p6 Ensembl10128,821,897 - 128,877,624 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,657,777 - 128,675,882 (+)Ensembl
GRCm38.p6 Ensembl10128,821,908 - 128,840,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220381   ⟹   ENSMUSP00000151317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,657,801 - 128,713,498 (+)Ensembl
GRCm38.p6 Ensembl10128,821,932 - 128,877,629 (+)Ensembl
RefSeq Acc Id: NM_001359403   ⟹   NP_001346332
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359404   ⟹   NP_001346333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359405   ⟹   NP_001346334
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359406   ⟹   NP_001346335
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359407   ⟹   NP_001346336
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025364   ⟹   NP_079640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
MGSCv3710128,258,827 - 128,314,694 (+)RGD
Celera10131,214,346 - 131,270,179 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153109
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,657,633 - 128,713,507 (+)NCBI
GRCm3810128,821,764 - 128,877,638 (+)NCBI
Sequence:
RefSeq Acc Id: NP_079640   ⟸   NM_025364
- Peptide Label: isoform 1
- UniProtKB: Q3UJZ4 (UniProtKB/Swiss-Prot),   Q9CU18 (UniProtKB/Swiss-Prot),   Q9D1J3 (UniProtKB/Swiss-Prot),   B2RXM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346335   ⟸   NM_001359406
- Peptide Label: isoform 5
- UniProtKB: A0A1W2P7G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346336   ⟸   NM_001359407
- Peptide Label: isoform 5
- UniProtKB: A0A1W2P7G2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346333   ⟸   NM_001359404
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001346332   ⟸   NM_001359403
- Peptide Label: isoform 2
- UniProtKB: B7ZWI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001346334   ⟸   NM_001359405
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000100863   ⟸   ENSMUST00000105230
RefSeq Acc Id: ENSMUSP00000151656   ⟸   ENSMUST00000219512
RefSeq Acc Id: ENSMUSP00000151317   ⟸   ENSMUST00000220381
Protein Domains
SAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D1J3-F1-model_v2 AlphaFold Q9D1J3 1-210 view protein structure

Promoters
RGD ID:6819707
Promoter ID:MM_KWN:6028
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_024180,   NM_025364,   UC007HOP.1,   UC007HOQ.1,   UC007HOS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610128,258,571 - 128,259,071 (-)MPROMDB
RGD ID:8673672
Promoter ID:EPDNEW_M14867
Type:multiple initiation site
Name:Sarnp_1
Description:Mus musculus SAP domain containing ribonucleoprotein , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,821,918 - 128,821,978EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913368 AgrOrtholog
Ensembl Genes ENSMUSG00000078427 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000105230 ENTREZGENE
  ENSMUST00000105230.4 UniProtKB/Swiss-Prot
  ENSMUST00000219512 ENTREZGENE
  ENSMUST00000219512.2 UniProtKB/TrEMBL
  ENSMUST00000220381 ENTREZGENE
  ENSMUST00000220381.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66118 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1913368 ENTREZGENE
NCBI Gene 66118 ENTREZGENE
PANTHER SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/Swiss-Prot
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/Swiss-Prot
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN UniProtKB/TrEMBL
Pfam SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sarnp PhenoGen
PROSITE SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF68906 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P6N2_MOUSE UniProtKB/TrEMBL
  A0A1W2P7G2 ENTREZGENE, UniProtKB/TrEMBL
  B2RXM7 ENTREZGENE, UniProtKB/TrEMBL
  B7ZWI2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UJZ4 ENTREZGENE
  Q9CU18 ENTREZGENE
  Q9D1J3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UJZ4 UniProtKB/Swiss-Prot
  Q9CU18 UniProtKB/Swiss-Prot