Slc25a42 (solute carrier family 25, member 42)

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Gene: Slc25a42 (solute carrier family 25, member 42) Mus musculus

Analyze

Symbol:

Slc25a42

Name:

solute carrier family 25, member 42

RGD ID:

1313867

MGI Page

MGI

Description:

Predicted to have adenine nucleotide transmembrane transporter activity and adenosine-diphosphatase activity. Predicted to be involved in cation transmembrane transport and purine ribonucleotide transport. Localizes to mitochondrial inner membrane. Orthologous to human SLC25A42 (solute carrier family 25 member 42); INTERACTS WITH (+)-dexrazoxane; 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2900084M01Rik; MGC37808; mitochondrial coenzyme A transporter SLC25A42; solute carrier family 25 member 42

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC25A42 (solute carrier family 25 member 42)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Slc25a42 (solute carrier family 25, member 42)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Slc25a42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC25A42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC25A42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc25a42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC25A42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	SLC25A42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc25a42 (solute carrier family 25 member 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Slc25a42 (solute carrier family 25, member 42)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	SLC25A42 (solute carrier family 25 member 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	slc25a42 (solute carrier family 25 member 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	LEU5	Alliance	DIOPT (OrthoFinder\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	DPCoAC	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	slc-25A42	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	YPR011C	Alliance	DIOPT (Hieranoid\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,636,990 - 70,664,931 (-)	NCBI	GRCm39		mm39
GRCm38	8	70,184,340 - 70,212,281 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,184,340 - 70,212,305 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,708,239 - 72,736,180 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,113,329 - 73,141,245 (-)	NCBI			mm8
Celera	8	72,740,228 - 72,768,104 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Episodic Mitochondrial Myopathy with or without Optic Atrophy and Reversible Leukoencephalopathy (ISO)

mitochondrial myopathy (ISO)

Recurrent Metabolic Crises with Variable Encephalomyopathic Features and Neurologic Regression (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (EXP)

(+)-schisandrin B (ISO)

1,2-dichloroethane (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

C60 fullerene (ISO)

carbon nanotube (EXP)

cisplatin (ISO)

clofibrate (EXP)

cyclosporin A (EXP,ISO)

decabromodiphenyl ether (ISO)

dibutyl phthalate (EXP)

doxorubicin (EXP,ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP,ISO)

pravastatin (EXP,ISO)

pyrazinecarboxamide (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Tesaglitazar (ISO)

tetrachloroethene (EXP)

tetrachloromethane (EXP,ISO)

titanium dioxide (EXP)

troglitazone (EXP,ISO)

vinclozolin (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ADP transport (ISO)

AMP transport (ISO)

ATP transport (ISO)

coenzyme A transmembrane transport (ISO)

transmembrane transport (IEA)

Cellular Component

integral component of membrane (IEA)

membrane (IEA)

mitochondrial inner membrane (HDA)

mitochondrion (HDA,ISO)

Molecular Function

adenosine-diphosphatase activity (ISO)

ADP transmembrane transporter activity (ISO)

AMP transmembrane transporter activity (ISO)

ATP transmembrane transporter activity (ISO)

coenzyme A transmembrane transporter activity (ISO)

protein binding (ISO)

transmembrane transporter activity (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

preweaning lethality, incomplete penetrance (IEA)

References

References - curated


1.	MGD data from the GO Consortium
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12865426	PMID:14610273	PMID:14681479	PMID:16141072	PMID:16141073	PMID:18614015
PMID:18799693	PMID:21677750	PMID:26465331	PMID:31138677

Genomics

Comparative Map Data

Slc25a42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,636,990 - 70,664,931 (-)	NCBI	GRCm39		mm39
GRCm38	8	70,184,340 - 70,212,281 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,184,340 - 70,212,305 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,708,239 - 72,736,180 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	73,113,329 - 73,141,245 (-)	NCBI			mm8
Celera	8	72,740,228 - 72,768,104 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

SLC25A42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	19,063,994 - 19,113,030 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	19,063,994 - 19,113,030 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	19,174,776 - 19,223,839 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,035,808 - 19,084,694 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	19,079,646 - 19,128,541 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,738,683 - 18,787,725 (+)	NCBI		HuRef
CHM1_1	19	19,174,467 - 19,223,537 (+)	NCBI		CHM1_1

Slc25a42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	20,962,144 - 21,000,191 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,962,227 - 20,985,225 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,812,201 - 20,850,121 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,697,100 - 19,720,036 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	16	19,402,645 - 19,425,671 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Slc25a42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,675,747 - 2,683,282 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,674,508 - 2,683,304 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	19,504,325 - 19,553,292 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,504,325 - 19,553,158 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	18,501,567 - 18,550,368 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SLC25A42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	44,044,665 - 44,065,282 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	44,043,672 - 44,074,691 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Slc25a42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	2,290,375 - 2,319,449 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,753,371 - 58,801,832 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,753,363 - 58,803,356 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,580,943 - 58,599,690 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A42
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	6	17,529,312 - 17,577,093 (+)	Ensembl
ChlSab1.1	6	17,529,048 - 17,577,092 (+)	NCBI

Slc25a42
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	2,033,770 - 2,056,590 (+)	NCBI

Position Markers

Slc25a42

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	B3.3	UniSTS
cM Map	8	34.15	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558870	Eae36_m	experimental allergic encephalomyelitis susceptibility 36 (mouse)			Not determined		8	14723160	71045600	Mouse
1357811	Orq3_m	ovulation rate QTL 3 (mouse)			Not determined		8	32016544	71287993	Mouse
4141437	W10q14_m	weight 10 weeks QTL 14 (mouse)			Not determined			32016544	71287993	Mouse
4141172	W6q9_m	weight 6 weeks QTL 9 (mouse)			Not determined			32016544	71287993	Mouse
4140966	Egq12_m	early growth QTL 12 (mouse)			Not determined			32016544	71287993	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2029
Count of miRNA genes:	645
Interacting mature miRNAs:	768
Transcripts:	ENSMUST00000063788, ENSMUST00000110127, ENSMUST00000134596, ENSMUST00000139333, ENSMUST00000150706
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK049593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK143301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK165793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC022213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC036140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE630284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY242199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000063788 ⟹ ENSMUSP00000065903

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,184,340 - 70,212,256 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000110127 ⟹ ENSMUSP00000105754

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,184,340 - 70,212,305 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000134596

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,192,369 - 70,212,305 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000139333

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,184,340 - 70,212,305 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000150706

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	70,187,716 - 70,212,305 (-)	Ensembl

RefSeq Acc Id:

NM_001007570 ⟹ NP_001007571

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	70,636,990 - 70,664,931 (-)	NCBI
GRCm38	8	70,184,340 - 70,212,281 (-)	ENTREZGENE
MGSCv37	8	72,708,239 - 72,736,180 (-)	RGD
Celera	8	72,740,228 - 72,768,104 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AGCGGCTGAGGCGGCTGAGGCAGTAGCGGCAGCAGCGGCGACGCGTCCGGGCAGGACTGAGCCT
CCCGCTGTCCAGCACGCCTGGGATGGGTAATGGTGTGCAGGAAGGCTCGGTGCGCCTGCGAGAG
GATGCTGAAGCCGTCCTGGCTGGGGCCGTCTCCTCGAAGAGAGACCACAGGCAAGTGCTCAGCT
CCCTGCTGTCTGGAGCCCTGGCTGGTGCACTTGCCAAGACAGCAGTAGCCCCCCTGGACCGGAC
CAAGATCATCTTCCAAGTGTCTTCAAAAAGATTTTCTGCCAAGGAGGCCTTCCGGCTCCTCTAC
TTCACCTACCTCAATGAGGGCTTCCTCAGCCTTTGGCGTGGGAACTCAGCCACCATGGTGCGAG
TGATTCCTTATGCAGCCATCCAGTTCAGCGCACACGAAGAATACAAGCGCATCCTGGGCCACTA
CTATGGCTTTCGTGGAGAAGCCCTGCCCCCATGGCCACGCCTCCTGGCTGGCGCCTTGGCAGGA
ACCACTGCGGCTTCCCTCACGTACCCTTTGGACCTGGTTAGAGCAAGGATGGCTGTGACGCCTA
AGGAAATGTACAGCAACATCTTTCATGTCTTCATCCGAATCTCGAGAGAGGAAGGACTGAAGAC
CCTCTATTTCGGGTTCACCCCCACTGTGCTGGGTGTCATTCCCTATGCGGGACTCAGCTTCTTC
ACGTACGAGTCACTGAAGAGCCTGCACCGAGAGTACAGTGGCCGCCCGCAGCCCTACCCCTTTG
AGCGCATGGTCTTCGGGGCCTGTGCTGGCCTTATCGGGCAATCGGCCTCCTACCCTCTGGACGT
GGTGCGGCGGCGCATGCAGACAGCAGGTGTCACGGGCCACCAGCACGGCTCCATCCTGAGCACA
CTACGCTCCATTGTACGTGAGGAGGGCGCGGTGCGGGGCCTCTACAAGGGCCTGAGCATGAACT
GGCTGAAGGGCCCAATTGCCGTGGGGATCAGCTTCACCACTTTCGACCTCATGCAGATCCTGCT
GCGCCGGCTGCAGAGCTAGGCTAACACAACAGTGGATGGTGAGCTGTTCGAGCAGGGGCATGCA
GCTGTGTGCTCGCAGCCCTGTGGTACCTTGAGGGTGGGCAGGAGGACGGGACCTGACTTGGGGC
TGTAGGGCCCATAGCGAAGTGCTGGTCCTCAGGGTGTGACATTGTGATGATGGATCTTGGCTGT
CCCCTCCCTTCAGTTCCTTGCTATTGGCTGGTGAGTCTCCTGAGGTGTTACCCAAAGGCCCCTA
ATGGGTCAATTGCACTTCCTGGCCCTGTGTCCTCTGACCTGCTGCTGATCTAGTGCCCATTGGC
ACCCGGGGCTCAGAGCCCATCCCTTCTTGCTATGACCGTGCCTGGCCTGCAGATGTGATAGCAA
TTCCTTTTAAGCCACACACTGGAGGGTCACAGTTTGCTCAGTGGTGGCTATACCTGTGTTCCTC
AATCCTCCACCATGCCTGCCTATCCTCTCCCAGGTGACAAATGGCTGCTCTTGCCCACATAGCT
TTCTCCCCAGAGCACTGTGCCCATCCTATTTCCGAGGGCTGCACCTGACCATTGCCAACTACCT
GGCTTGTACCTTTCCAGGAGGCCCTATGGCCACCAGACAGGGGTGTCAAGTTCAGACCCCACTG
GAAATGCCCATGTGGGTATCACTGATCTGGGGTGTCTTCCAAAGTACACCAATCAGGCCGAATG
CAGGCCCAAAGCTTCTTATATGCACAGCATCCATGGAGGTAGGGCTCAAGCTCTTGAAACTGCC
TTCTGTGGCTGTCATCTAGCCAGGCCACATGAAGCCCAAAGATGGGTGGGTGGCTTTTCCTGTG
TGAATGAGTACAGATGTATCCATGACCTGGGGAGCAGGGAAAGGCTGGGGTATCCAGGGACCAC
CAGCCAGCTGACACAAGGAGAACCCCCCCACACACTGGGTTCCCTAGGTGTCACAGGAAACTCT
TGCCTTTCCTGGTGTCTGGGGTTCTTGATTTAGGGTCTTTGAGACAGTCCTAGCCAGAAGCCCT
GGCTGTCCTGCTTCTGAGTGTTATCTGGGCTAGCCTTCAACTTAGAGCAGCCCTCCTGCCTTTA
CTCTCTTTTCTTTTCTTTTTTTTTCTTTCTCTCCCTTCCTTCCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTGT
CTCTGTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCATTTTATTT
TCCCGAGACAGGGTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC
CTCAAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCA
CTGCCCCACCTACCTTTAGTTTCTAGTTTTCAACTTATCCTGCCCCAGGTCTGCACATAAAACC
CCTACCCTTCCTATGCAATGTGGCTCTGGCTCAGAGGTGATCTGGGTGTTGATTCCCACAGCTG
GATGGCAGCCATCTCACATGCAGGACCTGAGCAGGGTGGCTCGAGCCCTGGGCATTTGCAATTC
TTGCTGCAGTCTTTGTTCATTCTATATTTCTTACCTTGTGCCTGTGACGCTTGGCCATCTCTCA
GCCTCCGCGGATAGTGATGGGCCATCCCCACCATGTCCCCAGACACCCCCCCCCCCCGGCAGCC
TCTGGTGGCTGAGAGGGACTGTCCTCTCGTGAGTGTACTGCCACTCCCTTCCCCACCTGGGATG
GAGAGTCTAGGCATCCCTTACCAGGAGGCCGGAGGTGACTGAGGCTCCTGGGTCACCTCAGCAG
GTTGCACCATGTAGATGGTTGGCTTGAGCCCTGCATCAGGCAACCAGCAGGGCAGGAGAAGTGA
GGGTGTCCTGGGTCCCTGATCTTCTTGCTTCCCCATATCCCCCCAGTAGCTCTGTGGCTGCCCT
CCCCCATGGTCACTGTCCAGTAGCTCTGTGGCTGCCCTCCTCCGTGGTCACTGTCCAGTCTGGA
GTTCTATTTTGATGCCATAAAGACACTTTGTTTATATATAATGTTTATATATTTTGAAGATTTG
TGCCAACAGAGTATATTTAATAAAATTTTAAATATCAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001007571	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH25937	(Get FASTA)	NCBI Sequence Viewer
	AAH36140	(Get FASTA)	NCBI Sequence Viewer
	Q8R0Y8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001007571 ⟸ NM_001007570

- UniProtKB:

Q8R0Y8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGNGVQEGSVRLREDAEAVLAGAVSSKRDHRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVS
SKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEA
LPPWPRLLAGALAGTTAASLTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTP
TVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQT
AGVTGHQHGSILSTLRSIVREEGAVRGLYKGLSMNWLKGPIAVGISFTTFDLMQILLRRLQS

hide sequence

RefSeq Acc Id:

ENSMUSP00000105754 ⟸ ENSMUST00000110127

RefSeq Acc Id:

ENSMUSP00000065903 ⟸ ENSMUST00000063788

Promoters

RGD ID:

8667287

Promoter ID:

EPDNEW_M11674

Type:

initiation region

Name:

Slc25a42_1

Description:

Mus musculus solute carrier family 25, member 42 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	70,212,281 - 70,212,341	EPDNEW

RGD ID:

6843727

Promoter ID:

MM_KWN:54673

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Liver

Transcripts:

ENSMUST00000063788

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	72,717,971 - 72,718,471 (-)	MPROMDB

RGD ID:

6843725

Promoter ID:

MM_KWN:54674

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000110127, OTTMUST00000052786, OTTMUST00000052787, OTTMUST00000052788, UC009LZF.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	72,736,111 - 72,736,922 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1920345	AgrOrtholog
Ensembl Genes	ENSMUSG00000002346	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000065903	UniProtKB/Swiss-Prot
	ENSMUSP00000105754	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000063788	UniProtKB/Swiss-Prot
	ENSMUST00000110127	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	1.50.40.10	UniProtKB/Swiss-Prot
InterPro	DNA_mismatch_repair_CS	UniProtKB/Swiss-Prot
	Graves_DC	UniProtKB/Swiss-Prot
	Mit_carrier	UniProtKB/Swiss-Prot
	Mitochondrial_sb/sol_carrier	UniProtKB/Swiss-Prot
	Mt_carrier_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:73095	UniProtKB/Swiss-Prot
MGD	MGI:1920345	ENTREZGENE
NCBI Gene	73095	ENTREZGENE
Pfam	Mito_carr	UniProtKB/Swiss-Prot
PhenoGen	Slc25a42	PhenoGen
PRINTS	GRAVESDC	UniProtKB/Swiss-Prot
	MITOCARRIER	UniProtKB/Swiss-Prot
PROSITE	SOLCAR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103506	UniProtKB/Swiss-Prot
UniGene	Mm.185413	ENTREZGENE
UniProt	Q8R0Y8	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM