Lmo4 (LIM domain only 4) - Rat Genome Database

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Gene: Lmo4 (LIM domain only 4) Mus musculus
Analyze
Symbol: Lmo4
Name: LIM domain only 4
RGD ID: 1313838
MGI Page MGI
Description: Predicted to enable metal ion binding activity. Involved in neural tube closure; positive regulation of kinase activity; and regulation of cell migration. Acts upstream of or within several processes, including cell differentiation in spinal cord; thymus development; and ventricular septum development. Located in cell leading edge and nucleus. Part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including branchial arch; central nervous system; embryo mesenchyme; genitourinary system; and sensory organ. Used to study anencephaly. Orthologous to human LMO4 (LIM domain only 4); PARTICIPATES IN interleukin-6 signaling pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A730077C12Rik; breast tumor autoantigen; Cr; Crp3; ethanol induced 4; Etoh; Etohi4; LIM domain only protein 4; LIM domain transcription factor LMO4; LMO-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393143,894,291 - 143,911,016 (-)NCBIGRCm39mm39
GRCm39 Ensembl3143,894,291 - 143,910,981 (-)Ensembl
GRCm383144,188,530 - 144,205,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3144,188,530 - 144,205,220 (-)EnsemblGRCm38mm10GRCm38
MGSCv373143,851,494 - 143,868,219 (-)NCBIGRCm37mm9NCBIm37
MGSCv363144,125,916 - 144,142,357 (-)NCBImm8
Celera3150,625,911 - 150,643,008 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map368.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
anencephaly  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal acute inflammation  (IAGP)
abnormal brain development  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal corneocyte envelope morphology  (IAGP)
abnormal cranial nerve morphology  (IAGP)
abnormal ear development  (IAGP)
abnormal embryonic neuroepithelial cell proliferation  (IAGP)
abnormal embryonic neuroepithelium morphology  (IAGP)
abnormal endolymphatic duct morphology  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal gut-associated lymphoid tissue morphology  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal lymphocyte physiology  (IAGP)
abnormal lymphopoiesis  (IAGP)
abnormal neural fold elevation formation  (IAGP)
abnormal neural tube closure  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal semicircular canal ampulla morphology  (IAGP)
abnormal sphenoid bone morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal trigeminal nerve morphology  (IAGP)
absent presphenoid bone  (IAGP)
absent semicircular canals  (IAGP)
acrania  (IAGP)
anencephaly  (IAGP)
cervical vertebral fusion  (IAGP)
curly tail  (IAGP)
decreased cochlear coiling  (IAGP)
decreased embryo size  (IAGP)
decreased Peyer's patch number  (IAGP)
disorganized barrel cortex  (IAGP)
enhanced behavioral response to cocaine  (IAGP)
everted embryonic neuroepithelium  (IAGP)
exencephaly  (IAGP)
eyelids open at birth  (IAGP)
fusion of glossopharyngeal and vagus nerve  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased embryonic neuroepithelium apoptosis  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
induced hyperactivity  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
open neural tube  (IAGP)
pallor  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
small otic vesicle  (IAGP)
spina bifida  (IAGP)
References

Additional References at PubMed
PMID:9382869   PMID:9502196   PMID:9736723   PMID:9815145   PMID:9840944   PMID:9860983   PMID:10349636   PMID:10512198   PMID:10556429   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11751867   PMID:12477932   PMID:12520002   PMID:12619132   PMID:12666198   PMID:14516683   PMID:14610273   PMID:14676840   PMID:14966285   PMID:14966286   PMID:15004160   PMID:15226823  
PMID:15295034   PMID:15664173   PMID:15677447   PMID:15691703   PMID:15805422   PMID:15856027   PMID:15897450   PMID:16141072   PMID:16141073   PMID:16255927   PMID:16284245   PMID:16597514  
PMID:16602821   PMID:16862160   PMID:16899735   PMID:16919269   PMID:16949565   PMID:17329426   PMID:17418808   PMID:17442747   PMID:17524392   PMID:17990271   PMID:17991461   PMID:18055048  
PMID:18287559   PMID:18404215   PMID:18619436   PMID:18957218   PMID:19020036   PMID:19030180   PMID:19111533   PMID:19323994   PMID:19366868   PMID:19386638   PMID:19571125   PMID:19607792  
PMID:19627984   PMID:19666821   PMID:19749747   PMID:19759535   PMID:19842177   PMID:19913004   PMID:19997957   PMID:20059953   PMID:20181579   PMID:20211142   PMID:20237272   PMID:20412781  
PMID:20549734   PMID:20615956   PMID:20618444   PMID:20668538   PMID:20843859   PMID:20932939   PMID:20949055   PMID:21150899   PMID:21267068   PMID:21368052   PMID:21525287   PMID:21652654  
PMID:21658586   PMID:21666133   PMID:21677750   PMID:21862448   PMID:21874351   PMID:21976498   PMID:22090492   PMID:22334647   PMID:22442076   PMID:22442089   PMID:22509321   PMID:22623674  
PMID:22705977   PMID:22723967   PMID:22988430   PMID:23193182   PMID:23303943   PMID:23431145   PMID:23575831   PMID:23658181   PMID:23874228   PMID:23892074   PMID:23904601   PMID:23917527  
PMID:24146773   PMID:24262147   PMID:24381275   PMID:24937445   PMID:24948604   PMID:24952961   PMID:25057208   PMID:25754825   PMID:25875176   PMID:25882817   PMID:25971728   PMID:26134647  
PMID:26324926   PMID:26387718   PMID:26494785   PMID:26579872   PMID:26671461   PMID:26705332   PMID:26813976   PMID:26814051   PMID:26830346   PMID:26874185   PMID:27100196   PMID:27307230  
PMID:27697904   PMID:27935475   PMID:28031177   PMID:28122236   PMID:28942923   PMID:29769265   PMID:30084950   PMID:30127719   PMID:30709655   PMID:30770380   PMID:30868103   PMID:31171666  
PMID:31318166   PMID:31434684   PMID:31666685   PMID:31843520   PMID:32030835   PMID:32094367   PMID:33795231  


Genomics

Comparative Map Data
Lmo4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393143,894,291 - 143,911,016 (-)NCBIGRCm39mm39
GRCm39 Ensembl3143,894,291 - 143,910,981 (-)Ensembl
GRCm383144,188,530 - 144,205,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3144,188,530 - 144,205,220 (-)EnsemblGRCm38mm10GRCm38
MGSCv373143,851,494 - 143,868,219 (-)NCBIGRCm37mm9NCBIm37
MGSCv363144,125,916 - 144,142,357 (-)NCBImm8
Celera3150,625,911 - 150,643,008 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map368.61NCBI
LMO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl187,328,880 - 87,348,923 (+)EnsemblGRCh38hg38GRCh38
GRCh38187,328,880 - 87,348,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37187,794,563 - 87,814,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36187,566,739 - 87,583,851 (+)NCBINCBI36hg18NCBI36
Build 34187,506,171 - 87,523,283NCBI
Celera186,039,830 - 86,060,286 (+)NCBI
Cytogenetic Map1p22.3NCBI
HuRef185,907,757 - 85,928,201 (+)NCBIHuRef
CHM1_1187,909,001 - 87,929,485 (+)NCBICHM1_1
Lmo4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22233,264,180 - 233,280,881 (-)NCBI
Rnor_6.0 Ensembl2250,218,641 - 250,241,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02250,218,635 - 250,235,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02268,752,222 - 268,769,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42242,498,074 - 242,515,160 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12242,484,813 - 242,501,899 (+)NCBI
Celera2225,256,943 - 225,273,636 (-)NCBICelera
Cytogenetic Map2q44NCBI
Lmo4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554236,849,555 - 6,866,137 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554236,849,542 - 6,865,928 (-)NCBIChiLan1.0ChiLan1.0
LMO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1188,698,962 - 88,718,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl188,698,962 - 88,718,760 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01119,848,323 - 119,867,007 (+)NCBIMhudiblu_PPA_v0panPan3
LMO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1660,892,478 - 60,909,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl660,727,270 - 60,941,058 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha663,606,359 - 63,623,679 (-)NCBI
ROS_Cfam_1.0661,432,227 - 61,449,629 (-)NCBI
UMICH_Zoey_3.1660,967,016 - 60,984,353 (-)NCBI
UNSW_CanFamBas_1.0660,923,303 - 60,940,624 (-)NCBI
UU_Cfam_GSD_1.0661,421,332 - 61,438,711 (-)NCBI
Lmo4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505897,881,311 - 97,900,916 (+)NCBI
SpeTri2.0NW_0049367321,541,511 - 1,557,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14128,894,113 - 128,910,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24141,341,687 - 141,354,291 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12046,105,755 - 46,126,291 (-)NCBI
ChlSab1.1 Ensembl2046,105,699 - 46,126,399 (-)Ensembl
Vero_WHO_p1.0NW_02366603371,708,190 - 71,726,923 (+)NCBI
Lmo4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474210,207,901 - 10,224,807 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396700000148100000Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100465596147339967Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101400000150100000Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107469620147599053Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111339594145339768Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3115030856149031023Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119351571153351695Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119351571153351695Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119612825153612825Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119612825153612825Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3120073096154073283Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3121066317155066317Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126564487160039680Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126647225160039680Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126754753160039680Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3131031299160039680Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3131143739160039680Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3132030856148745542Mouse
10412120Ccs3_mcolon cancer susceptibility 3 (mouse)Not determined3132048775146311914Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133756256160039680Mouse
1301221Hrtfm2_mheart failure modifier 2 (mouse)Not determined3143564487147339967Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143647225156658471Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1113
Count of miRNA genes:366
Interacting mature miRNAs:445
Transcripts:ENSMUST00000120539, ENSMUST00000121112, ENSMUST00000121796, ENSMUST00000124891, ENSMUST00000134961, ENSMUST00000148128
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001161770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF074600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF096996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF102817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY267947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120539   ⟹   ENSMUSP00000113840
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,188,530 - 144,205,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121112   ⟹   ENSMUSP00000113865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,188,632 - 144,202,332 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121796   ⟹   ENSMUSP00000113513
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,188,530 - 144,202,396 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124891
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,201,623 - 144,202,300 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,200,783 - 144,205,180 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148128
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,189,062 - 144,194,818 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196264   ⟹   ENSMUSP00000143035
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,188,683 - 144,205,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000197652   ⟹   ENSMUSP00000142551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3144,193,988 - 144,202,963 (-)Ensembl
RefSeq Acc Id: NM_001161769   ⟹   NP_001155241
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393143,894,291 - 143,908,157 (-)NCBI
GRCm383144,188,530 - 144,202,396 (-)NCBI
MGSCv373143,851,494 - 143,868,219 (-)RGD
Celera3150,625,911 - 150,643,008 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001161770   ⟹   NP_001155242
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393143,894,291 - 143,908,093 (-)NCBI
GRCm383144,188,530 - 144,202,332 (-)NCBI
MGSCv373143,851,494 - 143,868,219 (-)RGD
Celera3150,625,911 - 150,643,008 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010723   ⟹   NP_034853
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393143,894,291 - 143,911,016 (-)NCBI
GRCm383144,188,530 - 144,205,255 (-)ENTREZGENE
MGSCv373143,851,494 - 143,868,219 (-)RGD
Celera3150,625,911 - 150,643,008 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034853   ⟸   NM_010723
- UniProtKB: P61969 (UniProtKB/Swiss-Prot),   Q542S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155241   ⟸   NM_001161769
- UniProtKB: P61969 (UniProtKB/Swiss-Prot),   Q542S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155242   ⟸   NM_001161770
- UniProtKB: P61969 (UniProtKB/Swiss-Prot),   Q542S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142551   ⟸   ENSMUST00000197652
RefSeq Acc Id: ENSMUSP00000113865   ⟸   ENSMUST00000121112
RefSeq Acc Id: ENSMUSP00000113840   ⟸   ENSMUST00000120539
RefSeq Acc Id: ENSMUSP00000143035   ⟸   ENSMUST00000196264
RefSeq Acc Id: ENSMUSP00000113513   ⟸   ENSMUST00000121796
Protein Domains
LIM zinc-binding

Promoters
RGD ID:6834033
Promoter ID:MM_KWN:36305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B6
Transcripts:OTTMUST00000072140
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363143,857,291 - 143,858,582 (-)MPROMDB
RGD ID:6834032
Promoter ID:MM_KWN:36306
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000121796,   OTTMUST00000072145,   UC008RPM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363143,865,031 - 143,866,082 (-)MPROMDB
RGD ID:6834031
Promoter ID:MM_KWN:36307
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000029933,   ENSMUST00000120539,   OTTMUST00000072139,   UC008RPN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363143,868,021 - 143,868,972 (-)MPROMDB
RGD ID:6882540
Promoter ID:EPDNEW_M4721
Type:initiation region
Name:Lmo4_2
Description:Mus musculus LIM domain only 4 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4722  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383144,202,317 - 144,202,377EPDNEW
RGD ID:6882542
Promoter ID:EPDNEW_M4722
Type:initiation region
Name:Lmo4_1
Description:Mus musculus LIM domain only 4 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4721  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383144,205,186 - 144,205,246EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109360 AgrOrtholog
Ensembl Genes ENSMUSG00000028266 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000113513 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113840 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142551 UniProtKB/TrEMBL
  ENSMUSP00000143035 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000120539 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121112 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121796 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000196264 UniProtKB/TrEMBL
  ENSMUST00000197652 UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16911 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109360 ENTREZGENE
NCBI Gene 16911 ENTREZGENE
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lmo4 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDX9_MOUSE UniProtKB/TrEMBL
  A0A0G2JF61_MOUSE UniProtKB/TrEMBL
  LMO4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q542S1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary O00158 UniProtKB/Swiss-Prot
  O88894 UniProtKB/Swiss-Prot